Wall clock time and date at job start Tue Mar 31 2020 12:19:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35662 * 116.99709 * 2 1
4 4 C 1.39076 * 119.88419 * 180.02562 * 3 2 1
5 5 C 1.37123 * 120.11648 * 180.02562 * 4 3 2
6 6 C 1.40038 * 119.88238 * 359.97438 * 5 4 3
7 7 C 1.46851 * 120.11361 * 180.02562 * 6 5 4
8 8 O 1.21295 * 120.00279 * 359.97438 * 7 6 5
9 9 C 1.50706 * 120.00136 * 179.97438 * 7 6 5
10 10 C 1.52997 * 109.47238 * 179.97438 * 9 7 6
11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7
12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9
13 13 C 1.53006 * 109.46886 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.46942 * 180.02562 * 13 12 11
15 15 O 1.21219 * 119.99960 * 0.02562 * 14 13 12
16 16 O 1.34308 * 120.00205 * 180.02562 * 14 13 12
17 17 C 1.34915 * 117.00399 * 179.97438 * 16 14 13
18 18 H 1.07999 * 119.99870 * 0.02562 * 17 16 14
19 19 C 1.38758 * 120.00351 * 179.97438 * 17 16 14
20 20 N 1.31444 * 119.99806 * 0.02562 * 19 17 16
21 21 Si 1.86793 * 120.00065 * 180.02562 * 19 17 16
22 22 H 1.48499 * 109.47237 * 90.00340 * 21 19 17
23 23 H 1.48500 * 109.47003 * 209.99863 * 21 19 17
24 24 H 1.48502 * 109.47443 * 329.99936 * 21 19 17
25 25 C 1.40044 * 119.77263 * 0.27186 * 6 5 4
26 26 C 1.37125 * 119.88086 * 359.47015 * 25 6 5
27 27 H 1.09004 * 109.47030 * 299.99490 * 1 2 3
28 28 H 1.08995 * 109.47550 * 60.00261 * 1 2 3
29 29 H 1.09008 * 109.46684 * 180.02562 * 1 2 3
30 30 H 1.07996 * 119.94222 * 0.02562 * 4 3 2
31 31 H 1.07994 * 120.05448 * 179.97438 * 5 4 3
32 32 H 1.09001 * 109.46953 * 299.99503 * 9 7 6
33 33 H 1.09000 * 109.47318 * 59.99101 * 9 7 6
34 34 H 1.09001 * 109.46832 * 299.99686 * 10 9 7
35 35 H 1.09004 * 109.47261 * 59.99705 * 10 9 7
36 36 H 1.08992 * 109.47554 * 299.99696 * 11 10 9
37 37 H 1.08996 * 109.47261 * 60.00229 * 11 10 9
38 38 H 1.08998 * 109.47844 * 299.99997 * 12 11 10
39 39 H 1.09001 * 109.47248 * 60.00689 * 12 11 10
40 40 H 1.09001 * 109.47377 * 300.00037 * 13 12 11
41 41 H 1.08996 * 109.47261 * 60.00578 * 13 12 11
42 42 H 0.96991 * 120.00078 * 179.97438 * 20 19 17
43 43 H 1.07994 * 120.06008 * 179.70418 * 25 6 5
44 44 H 1.07994 * 119.94273 * 180.24665 * 26 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2088 0.0000
4 6 3.4339 1.2788 -0.0005
5 6 4.0613 2.4981 0.0000
6 6 3.3009 3.6741 0.0005
7 6 3.9675 4.9825 0.0005
8 8 5.1788 5.0461 0.0005
9 6 3.1467 6.2464 0.0005
10 6 4.0787 7.4598 0.0012
11 6 3.2453 8.7429 0.0005
12 6 4.1773 9.9563 0.0018
13 6 3.3439 11.2395 0.0005
14 6 4.2619 12.4346 0.0012
15 8 5.4636 12.2758 0.0020
16 8 3.7486 13.6757 0.0007
17 6 4.6252 14.7013 0.0019
18 1 5.6870 14.5040 0.0027
19 6 4.1627 16.0095 0.0010
20 7 2.8704 16.2496 -0.0004
21 14 5.3765 17.4293 0.0019
22 1 5.6996 17.8052 -1.3980
23 1 4.7758 18.5936 0.7009
24 1 6.6191 17.0179 0.7034
25 6 1.9025 3.5979 0.0063
26 6 1.2849 2.3736 0.0004
27 1 -0.3633 0.5138 0.8901
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0278 0.0005
30 1 4.0194 0.3714 -0.0014
31 1 5.1399 2.5513 0.0000
32 1 2.5179 6.2713 -0.8895
33 1 2.5177 6.2713 0.8904
34 1 4.7071 7.4347 0.8914
35 1 4.7079 7.4352 -0.8886
36 1 2.6172 8.7678 -0.8899
37 1 2.6159 8.7678 0.8900
38 1 4.8052 9.9314 0.8924
39 1 4.8070 9.9317 -0.8875
40 1 2.7164 11.2643 -0.8904
41 1 2.7139 11.2644 0.8896
42 1 2.5470 17.1640 -0.0007
43 1 1.3116 4.5018 0.0116
44 1 0.2067 2.3138 0.0008
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000789209071.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:37
Heat of formation + Delta-G solvation = -154.423528 kcal
Electronic energy + Delta-G solvation = -24505.963358 eV
Core-core repulsion = 20581.484096 eV
Total energy + Delta-G solvation = -3924.479262 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.87222 -39.68989 -38.92562 -37.52507 -36.03924 -34.90658 -32.57156 -32.07567
-31.60707 -30.90669 -28.48097 -27.54552 -25.38468 -24.15874 -23.29225 -22.27382
-20.96764 -20.00769 -19.45829 -18.80520 -17.64861 -16.93573 -16.78317 -16.37319
-16.29640 -16.13793 -15.31621 -15.24469 -14.93174 -14.45381 -14.32407 -14.28880
-14.18990 -13.91058 -13.32860 -13.30219 -12.91532 -12.90751 -12.51486 -12.41369
-11.94419 -11.77847 -11.62067 -11.56810 -11.34742 -11.14543 -11.03434 -10.83683
-10.82857 -10.39212 -10.33546 -10.26848 -9.85867 -9.73422 -9.63763 -8.92114
-8.76942 -8.52203 -6.35549 -4.03102 0.30175 0.84717 2.10324 2.64130
3.15563 3.22267 3.28642 3.33168 3.62919 3.71173 4.01128 4.15221
4.29836 4.48962 4.56483 4.56514 4.70710 4.78916 4.84635 4.87863
4.90240 4.96901 5.10852 5.16659 5.29716 5.29978 5.41061 5.46322
5.62626 5.66537 5.72954 5.75502 5.83618 5.94833 6.00423 6.08534
6.10503 6.13381 6.28932 6.53989 6.67341 6.74890 6.91813 7.32623
7.45885 8.02308 8.80284 9.13807 9.94304 10.82903
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.042446 B = 0.001478 C = 0.001431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.505205 B =18944.787176 C =19562.635924
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.314 6.314
3 C 0.157 3.843
4 C -0.166 4.166
5 C -0.022 4.022
6 C -0.209 4.209
7 C 0.397 3.603
8 O -0.453 6.453
9 C -0.166 4.166
10 C -0.111 4.111
11 C -0.119 4.119
12 C -0.104 4.104
13 C -0.103 4.103
14 C 0.396 3.604
15 O -0.558 6.558
16 O -0.219 6.219
17 C -0.382 4.382
18 H 0.094 0.906
19 C 0.041 3.959
20 N -0.868 5.868
21 Si 0.942 3.058
22 H -0.274 1.274
23 H -0.278 1.278
24 H -0.267 1.267
25 C -0.029 4.029
26 C -0.223 4.223
27 H 0.059 0.941
28 H 0.059 0.941
29 H 0.103 0.897
30 H 0.137 0.863
31 H 0.141 0.859
32 H 0.098 0.902
33 H 0.098 0.902
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.068 0.932
39 H 0.068 0.932
40 H 0.088 0.912
41 H 0.088 0.912
42 H 0.268 0.732
43 H 0.137 0.863
44 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.825 -32.267 0.012 33.452
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.226 6.226
3 C 0.111 3.889
4 C -0.185 4.185
5 C -0.040 4.040
6 C -0.210 4.210
7 C 0.275 3.725
8 O -0.328 6.328
9 C -0.203 4.203
10 C -0.149 4.149
11 C -0.156 4.156
12 C -0.142 4.142
13 C -0.141 4.141
14 C 0.243 3.757
15 O -0.456 6.456
16 O -0.126 6.126
17 C -0.458 4.458
18 H 0.112 0.888
19 C -0.163 4.163
20 N -0.506 5.506
21 Si 0.767 3.233
22 H -0.199 1.199
23 H -0.204 1.204
24 H -0.191 1.191
25 C -0.048 4.048
26 C -0.242 4.242
27 H 0.078 0.922
28 H 0.078 0.922
29 H 0.121 0.879
30 H 0.155 0.845
31 H 0.159 0.841
32 H 0.117 0.883
33 H 0.117 0.883
34 H 0.088 0.912
35 H 0.088 0.912
36 H 0.082 0.918
37 H 0.082 0.918
38 H 0.087 0.913
39 H 0.087 0.913
40 H 0.107 0.893
41 H 0.107 0.893
42 H 0.078 0.922
43 H 0.155 0.845
44 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -7.958 -32.263 0.018 33.230
hybrid contribution 0.040 0.791 -0.010 0.792
sum -7.918 -31.473 0.008 32.454
Atomic orbital electron populations
1.23159 0.77751 1.04402 1.01774 1.86047 1.21966 1.26955 1.87659
1.19426 0.92475 0.84305 0.92709 1.20318 0.91287 0.98977 1.07883
1.21151 1.00756 0.90434 0.91633 1.20522 0.94283 0.95270 1.10964
1.22420 0.89202 0.89742 0.71164 1.90548 1.16411 1.89621 1.36216
1.22080 1.00073 0.93661 1.04514 1.21419 0.97617 0.92207 1.03626
1.21614 0.98170 0.93739 1.02079 1.21339 0.97576 0.91609 1.03648
1.21110 0.97876 0.90924 1.04179 1.23333 0.88409 0.85812 0.78192
1.90549 1.17165 1.86955 1.50900 1.83882 1.39906 1.13055 1.75796
1.21217 0.89712 0.82694 1.52187 0.88808 1.25317 0.96923 0.97683
0.96337 1.69993 1.12512 1.20992 1.47067 0.85693 0.79538 0.79394
0.78685 1.19938 1.20374 1.19142 1.21168 0.93367 0.97742 0.92483
1.21130 1.00498 0.92181 1.10388 0.92224 0.92215 0.87908 0.84539
0.84118 0.88334 0.88340 0.91216 0.91219 0.91823 0.91830 0.91282
0.91289 0.89321 0.89318 0.92196 0.84479 0.84740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.07 9.80 101.05 0.99 1.07 16
2 O -0.31 -2.15 10.48 -18.69 -0.20 -2.35 16
3 C 0.16 1.16 6.70 -38.96 -0.26 0.90 16
4 C -0.17 -1.27 9.95 -39.68 -0.39 -1.67 16
5 C -0.02 -0.18 9.57 -39.31 -0.38 -0.56 16
6 C -0.21 -1.79 5.87 -105.06 -0.62 -2.41 16
7 C 0.40 3.97 7.11 -30.82 -0.22 3.75 16
8 O -0.45 -6.10 15.97 5.54 0.09 -6.01 16
9 C -0.17 -1.32 4.30 -27.88 -0.12 -1.44 16
10 C -0.11 -1.19 4.50 -26.73 -0.12 -1.32 16
11 C -0.12 -1.31 5.21 -26.73 -0.14 -1.45 16
12 C -0.10 -1.61 4.50 -26.73 -0.12 -1.73 16
13 C -0.10 -1.84 5.81 -27.88 -0.16 -2.01 16
14 C 0.40 10.00 7.91 36.01 0.28 10.28 16
15 O -0.56 -15.43 15.22 -19.06 -0.29 -15.72 16
16 O -0.22 -6.46 9.75 -20.68 -0.20 -6.66 16
17 C -0.38 -11.63 9.65 30.92 0.30 -11.33 16
18 H 0.09 2.88 6.86 -52.49 -0.36 2.52 16
19 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16
20 N -0.87 -25.93 13.67 55.48 0.76 -25.18 16
21 Si 0.94 21.79 29.55 -169.99 -5.02 16.77 16
22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
25 C -0.03 -0.19 9.44 -39.31 -0.37 -0.56 16
26 C -0.22 -1.37 8.99 -39.67 -0.36 -1.73 16
27 H 0.06 0.13 7.65 -51.93 -0.40 -0.26 16
28 H 0.06 0.13 7.65 -51.93 -0.40 -0.26 16
29 H 0.10 0.15 8.14 -51.92 -0.42 -0.28 16
30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16
31 H 0.14 1.16 7.64 -52.49 -0.40 0.76 16
32 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16
33 H 0.10 0.60 8.07 -51.93 -0.42 0.19 16
34 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16
35 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16
36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16
39 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16
40 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16
41 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16
42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
43 H 0.14 0.56 7.04 -52.49 -0.37 0.19 16
44 H 0.13 0.51 6.27 -52.49 -0.33 0.18 16
LS Contribution 379.50 15.07 5.72 5.72
Total: -1.00 -37.04 379.50 -7.37 -44.41
By element:
Atomic # 1 Polarization: 4.58 SS G_CDS: -6.45 Total: -1.87 kcal
Atomic # 6 Polarization: -7.34 SS G_CDS: -1.78 Total: -9.12 kcal
Atomic # 7 Polarization: -25.93 SS G_CDS: 0.76 Total: -25.18 kcal
Atomic # 8 Polarization: -30.14 SS G_CDS: -0.60 Total: -30.74 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -37.04 -7.37 -44.41 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000789209071.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.009 kcal
(2) G-P(sol) polarization free energy of solvation -37.042 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.052 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds