Wall clock time and date at job start Tue Mar 31 2020 12:19:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35662 * 116.99709 * 2 1
4 4 C 1.39076 * 119.88419 * 180.02562 * 3 2 1
5 5 C 1.37123 * 120.11648 * 180.02562 * 4 3 2
6 6 C 1.40038 * 119.88238 * 359.97438 * 5 4 3
7 7 C 1.46851 * 120.11361 * 180.02562 * 6 5 4
8 8 O 1.21295 * 120.00279 * 359.97438 * 7 6 5
9 9 C 1.50706 * 120.00136 * 179.97438 * 7 6 5
10 10 C 1.52997 * 109.47238 * 179.97438 * 9 7 6
11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7
12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9
13 13 C 1.53006 * 109.46886 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.46942 * 180.02562 * 13 12 11
15 15 O 1.21219 * 119.99960 * 0.02562 * 14 13 12
16 16 O 1.34308 * 120.00205 * 180.02562 * 14 13 12
17 17 C 1.34915 * 117.00399 * 179.97438 * 16 14 13
18 18 H 1.07999 * 119.99870 * 0.02562 * 17 16 14
19 19 C 1.38758 * 120.00351 * 179.97438 * 17 16 14
20 20 N 1.31444 * 119.99806 * 0.02562 * 19 17 16
21 21 Si 1.86793 * 120.00065 * 180.02562 * 19 17 16
22 22 H 1.48499 * 109.47237 * 90.00340 * 21 19 17
23 23 H 1.48500 * 109.47003 * 209.99863 * 21 19 17
24 24 H 1.48502 * 109.47443 * 329.99936 * 21 19 17
25 25 C 1.40044 * 119.77263 * 0.27186 * 6 5 4
26 26 C 1.37125 * 119.88086 * 359.47015 * 25 6 5
27 27 H 1.09004 * 109.47030 * 299.99490 * 1 2 3
28 28 H 1.08995 * 109.47550 * 60.00261 * 1 2 3
29 29 H 1.09008 * 109.46684 * 180.02562 * 1 2 3
30 30 H 1.07996 * 119.94222 * 0.02562 * 4 3 2
31 31 H 1.07994 * 120.05448 * 179.97438 * 5 4 3
32 32 H 1.09001 * 109.46953 * 299.99503 * 9 7 6
33 33 H 1.09000 * 109.47318 * 59.99101 * 9 7 6
34 34 H 1.09001 * 109.46832 * 299.99686 * 10 9 7
35 35 H 1.09004 * 109.47261 * 59.99705 * 10 9 7
36 36 H 1.08992 * 109.47554 * 299.99696 * 11 10 9
37 37 H 1.08996 * 109.47261 * 60.00229 * 11 10 9
38 38 H 1.08998 * 109.47844 * 299.99997 * 12 11 10
39 39 H 1.09001 * 109.47248 * 60.00689 * 12 11 10
40 40 H 1.09001 * 109.47377 * 300.00037 * 13 12 11
41 41 H 1.08996 * 109.47261 * 60.00578 * 13 12 11
42 42 H 0.96991 * 120.00078 * 179.97438 * 20 19 17
43 43 H 1.07994 * 120.06008 * 179.70418 * 25 6 5
44 44 H 1.07994 * 119.94273 * 180.24665 * 26 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2088 0.0000
4 6 3.4339 1.2788 -0.0005
5 6 4.0613 2.4981 0.0000
6 6 3.3009 3.6741 0.0005
7 6 3.9675 4.9825 0.0005
8 8 5.1788 5.0461 0.0005
9 6 3.1467 6.2464 0.0005
10 6 4.0787 7.4598 0.0012
11 6 3.2453 8.7429 0.0005
12 6 4.1773 9.9563 0.0018
13 6 3.3439 11.2395 0.0005
14 6 4.2619 12.4346 0.0012
15 8 5.4636 12.2758 0.0020
16 8 3.7486 13.6757 0.0007
17 6 4.6252 14.7013 0.0019
18 1 5.6870 14.5040 0.0027
19 6 4.1627 16.0095 0.0010
20 7 2.8704 16.2496 -0.0004
21 14 5.3765 17.4293 0.0019
22 1 5.6996 17.8052 -1.3980
23 1 4.7758 18.5936 0.7009
24 1 6.6191 17.0179 0.7034
25 6 1.9025 3.5979 0.0063
26 6 1.2849 2.3736 0.0004
27 1 -0.3633 0.5138 0.8901
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0278 0.0005
30 1 4.0194 0.3714 -0.0014
31 1 5.1399 2.5513 0.0000
32 1 2.5179 6.2713 -0.8895
33 1 2.5177 6.2713 0.8904
34 1 4.7071 7.4347 0.8914
35 1 4.7079 7.4352 -0.8886
36 1 2.6172 8.7678 -0.8899
37 1 2.6159 8.7678 0.8900
38 1 4.8052 9.9314 0.8924
39 1 4.8070 9.9317 -0.8875
40 1 2.7164 11.2643 -0.8904
41 1 2.7139 11.2644 0.8896
42 1 2.5470 17.1640 -0.0007
43 1 1.3116 4.5018 0.0116
44 1 0.2067 2.3138 0.0008
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000789209071.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:37
Heat of formation + Delta-G solvation = -176.624328 kcal
Electronic energy + Delta-G solvation = -24506.926057 eV
Core-core repulsion = 20581.484096 eV
Total energy + Delta-G solvation = -3925.441961 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.41531 -41.00202 -40.34844 -38.08452 -37.61568 -36.49948 -34.30550 -33.54729
-32.28712 -31.52364 -29.32718 -28.23853 -27.27226 -25.14286 -24.00453 -23.10977
-21.93900 -21.39124 -20.51505 -19.86784 -19.26176 -18.41500 -17.53219 -17.27997
-17.26053 -16.75940 -16.58639 -16.51324 -16.21248 -15.89268 -15.57405 -15.50327
-14.67814 -14.59019 -14.37265 -14.35457 -13.96665 -13.66793 -13.60161 -13.53100
-13.18661 -12.89940 -12.76470 -12.75083 -12.33696 -12.24110 -12.09749 -12.03199
-11.99335 -11.89344 -11.85911 -11.76524 -11.35931 -11.01463 -10.69560 -10.62010
-10.15563 -9.30485 -8.54159 -6.34163 -0.30083 0.33628 1.31519 1.33711
1.45057 1.50842 1.67258 2.13283 2.26383 2.77423 2.80773 2.96907
3.09070 3.71181 3.85484 3.92380 3.97864 4.04050 4.14958 4.29385
4.30024 4.31367 4.41342 4.44776 4.51657 4.57779 4.64941 4.72076
4.75738 4.80853 4.88846 4.97865 5.01840 5.03884 5.05723 5.13460
5.22516 5.24125 5.32687 5.42176 5.44889 5.54969 5.62465 5.84225
6.32068 6.62625 6.70143 6.91287 7.78851 8.66731
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.042446 B = 0.001478 C = 0.001431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.505205 B =18944.787176 C =19562.635924
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.331 6.331
3 C 0.152 3.848
4 C -0.180 4.180
5 C -0.036 4.036
6 C -0.230 4.230
7 C 0.397 3.603
8 O -0.504 6.504
9 C -0.159 4.159
10 C -0.111 4.111
11 C -0.105 4.105
12 C -0.100 4.100
13 C -0.092 4.092
14 C 0.389 3.611
15 O -0.590 6.590
16 O -0.248 6.248
17 C -0.425 4.425
18 H 0.077 0.923
19 C -0.003 4.003
20 N -0.902 5.902
21 Si 1.016 2.984
22 H -0.260 1.260
23 H -0.257 1.257
24 H -0.266 1.266
25 C -0.020 4.020
26 C -0.222 4.222
27 H 0.071 0.929
28 H 0.071 0.929
29 H 0.118 0.882
30 H 0.141 0.859
31 H 0.129 0.871
32 H 0.128 0.872
33 H 0.128 0.872
34 H 0.049 0.951
35 H 0.049 0.951
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.049 0.951
39 H 0.049 0.951
40 H 0.114 0.886
41 H 0.115 0.885
42 H 0.279 0.721
43 H 0.169 0.831
44 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.621 -32.549 -0.007 34.562
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.244 6.244
3 C 0.106 3.894
4 C -0.198 4.198
5 C -0.054 4.054
6 C -0.231 4.231
7 C 0.278 3.722
8 O -0.383 6.383
9 C -0.196 4.196
10 C -0.148 4.148
11 C -0.142 4.142
12 C -0.138 4.138
13 C -0.130 4.130
14 C 0.237 3.763
15 O -0.488 6.488
16 O -0.157 6.157
17 C -0.501 4.501
18 H 0.095 0.905
19 C -0.203 4.203
20 N -0.540 5.540
21 Si 0.835 3.165
22 H -0.184 1.184
23 H -0.181 1.181
24 H -0.191 1.191
25 C -0.038 4.038
26 C -0.240 4.240
27 H 0.090 0.910
28 H 0.090 0.910
29 H 0.136 0.864
30 H 0.159 0.841
31 H 0.147 0.853
32 H 0.146 0.854
33 H 0.146 0.854
34 H 0.068 0.932
35 H 0.068 0.932
36 H 0.105 0.895
37 H 0.105 0.895
38 H 0.068 0.932
39 H 0.068 0.932
40 H 0.133 0.867
41 H 0.133 0.867
42 H 0.088 0.912
43 H 0.187 0.813
44 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -10.794 -32.578 -0.004 34.320
hybrid contribution 0.851 0.715 -0.004 1.111
sum -9.943 -31.864 -0.008 33.379
Atomic orbital electron populations
1.23463 0.75763 1.05921 1.02889 1.86031 1.24086 1.26867 1.87406
1.19607 0.92465 0.85184 0.92166 1.20416 0.92114 0.98843 1.08446
1.21170 1.00519 0.91240 0.92485 1.20541 0.95469 0.94350 1.12711
1.22906 0.88708 0.91161 0.69375 1.90539 1.18469 1.90259 1.39014
1.22106 0.99476 0.90773 1.07206 1.21342 0.97916 0.93747 1.01823
1.21533 0.97346 0.91057 1.04294 1.21341 0.97953 0.92648 1.01872
1.21324 0.97117 0.88001 1.06511 1.24891 0.89283 0.86356 0.75736
1.90518 1.19167 1.87306 1.51820 1.83906 1.40403 1.14395 1.76991
1.21393 0.89421 0.84167 1.55116 0.90504 1.26509 0.99245 0.99909
0.94663 1.70063 1.14423 1.22485 1.46999 0.84649 0.76739 0.75563
0.79541 1.18436 1.18138 1.19067 1.21490 0.92344 0.99173 0.90768
1.21462 1.01883 0.91427 1.09256 0.91041 0.91035 0.86408 0.84113
0.85284 0.85412 0.85409 0.93194 0.93202 0.89526 0.89531 0.93201
0.93208 0.86740 0.86737 0.91164 0.81324 0.81898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.05 9.80 113.37 1.11 1.16 16
2 O -0.33 -4.03 10.48 -89.78 -0.94 -4.98 16
3 C 0.15 2.04 6.70 22.67 0.15 2.19 16
4 C -0.18 -2.78 9.95 22.21 0.22 -2.56 16
5 C -0.04 -0.64 9.57 22.44 0.21 -0.42 16
6 C -0.23 -3.73 5.87 -20.15 -0.12 -3.85 16
7 C 0.40 7.74 7.11 27.94 0.20 7.94 16
8 O -0.50 -14.34 15.97 -3.08 -0.05 -14.39 16
9 C -0.16 -2.09 4.30 29.85 0.13 -1.96 16
10 C -0.11 -2.25 4.50 30.59 0.14 -2.12 16
11 C -0.11 -2.03 5.21 30.59 0.16 -1.87 16
12 C -0.10 -3.03 4.50 30.60 0.14 -2.89 16
13 C -0.09 -3.18 5.81 29.85 0.17 -3.00 16
14 C 0.39 20.01 7.91 71.24 0.56 20.58 16
15 O -0.59 -33.78 15.22 20.75 0.32 -33.46 16
16 O -0.25 -15.01 9.75 14.95 0.15 -14.86 16
17 C -0.43 -26.64 9.65 67.94 0.66 -25.99 16
18 H 0.08 4.93 6.86 -2.91 -0.02 4.91 16
19 C 0.00 -0.18 5.49 84.88 0.47 0.29 16
20 N -0.90 -53.94 13.67 21.63 0.30 -53.64 16
21 Si 1.02 44.39 29.55 68.60 2.03 46.41 16
22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16
23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
25 C -0.02 -0.20 9.44 22.45 0.21 0.02 16
26 C -0.22 -2.07 8.99 22.21 0.20 -1.87 16
27 H 0.07 0.10 7.65 -2.39 -0.02 0.08 16
28 H 0.07 0.10 7.65 -2.39 -0.02 0.08 16
29 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16
30 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16
31 H 0.13 2.44 7.64 -2.91 -0.02 2.42 16
32 H 0.13 0.99 8.09 -2.39 -0.02 0.97 16
33 H 0.13 0.99 8.07 -2.39 -0.02 0.97 16
34 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16
35 H 0.05 1.20 8.10 -2.38 -0.02 1.18 16
36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
38 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16
39 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16
40 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16
41 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16
42 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16
43 H 0.17 0.52 7.04 -2.91 -0.02 0.50 16
44 H 0.16 0.53 6.27 -2.91 -0.02 0.51 16
Total: -1.00 -85.36 379.50 7.40 -77.96
By element:
Atomic # 1 Polarization: 10.32 SS G_CDS: 1.00 Total: 11.31 kcal
Atomic # 6 Polarization: -18.96 SS G_CDS: 4.61 Total: -14.35 kcal
Atomic # 7 Polarization: -53.94 SS G_CDS: 0.30 Total: -53.64 kcal
Atomic # 8 Polarization: -67.16 SS G_CDS: -0.53 Total: -67.69 kcal
Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal
Total: -85.36 7.40 -77.96 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000789209071.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -98.663 kcal
(2) G-P(sol) polarization free energy of solvation -85.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.403 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) -176.624 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds