Wall clock time and date at job start Tue Mar 31 2020 12:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00495 * 2 1 4 4 C 1.53001 * 110.01549 * 57.15827 * 3 2 1 5 5 O 1.45198 * 109.47098 * 57.96020 * 4 3 2 6 6 C 1.34757 * 116.99841 * 179.97438 * 5 4 3 7 7 O 1.21509 * 119.99992 * 359.97438 * 6 5 4 8 8 C 1.47395 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.39734 * 120.20067 * 0.02562 * 8 6 5 10 10 C 1.37806 * 119.91040 * 179.97438 * 9 8 6 11 11 C 1.38588 * 120.33674 * 0.02562 * 10 9 8 12 12 C 1.38025 * 120.40823 * 359.97438 * 11 10 9 13 13 C 1.38827 * 120.08299 * 0.02562 * 12 11 10 14 14 O 1.35501 * 120.16906 * 180.02562 * 13 12 11 15 15 C 1.34817 * 117.00156 * 355.17851 * 14 13 12 16 16 H 1.08005 * 119.99817 * 5.03159 * 15 14 13 17 17 C 1.38693 * 120.00329 * 185.03456 * 15 14 13 18 18 N 1.31516 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00306 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47516 * 89.99097 * 19 17 15 21 21 H 1.48498 * 109.47462 * 210.00214 * 19 17 15 22 22 H 1.48508 * 109.46618 * 329.99655 * 19 17 15 23 23 C 1.54265 * 110.03215 * 178.55240 * 3 2 1 24 24 C 1.54961 * 104.15988 * 95.75528 * 23 3 2 25 25 C 1.54884 * 102.78026 * 37.88565 * 24 23 3 26 26 C 1.53877 * 110.02947 * 295.77116 * 3 2 1 27 27 H 1.09001 * 109.46967 * 302.85466 * 1 2 3 28 28 H 1.08999 * 109.46869 * 62.84841 * 1 2 3 29 29 H 1.09002 * 109.47417 * 182.84718 * 1 2 3 30 30 H 1.08998 * 109.47129 * 297.95826 * 4 3 2 31 31 H 1.08998 * 109.46935 * 177.95818 * 4 3 2 32 32 H 1.07996 * 120.04426 * 0.02562 * 9 8 6 33 33 H 1.07998 * 119.82986 * 180.02562 * 10 9 8 34 34 H 1.07997 * 119.79435 * 180.26994 * 11 10 9 35 35 H 1.08008 * 119.95586 * 180.02562 * 12 11 10 36 36 H 0.96999 * 120.00344 * 180.02562 * 18 17 15 37 37 H 1.09004 * 110.48156 * 214.39813 * 23 3 2 38 38 H 1.08991 * 110.48696 * 337.04210 * 23 3 2 39 39 H 1.09001 * 110.71829 * 279.57131 * 24 23 3 40 40 H 1.09005 * 110.76750 * 156.22270 * 24 23 3 41 41 H 1.09005 * 110.48757 * 203.41055 * 25 24 23 42 42 H 1.09000 * 110.49040 * 80.76333 * 25 24 23 43 43 H 1.08998 * 110.03287 * 359.94598 * 26 3 2 44 44 H 1.08998 * 110.03213 * 121.37861 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5112 2.1009 1.2078 5 8 1.8432 1.3875 2.4281 6 6 1.4709 1.9579 3.5908 7 8 0.8854 3.0226 3.5851 8 6 1.7741 1.2904 4.8695 9 6 2.4477 0.0662 4.8809 10 6 2.7285 -0.5525 6.0799 11 6 2.3457 0.0331 7.2762 12 6 1.6797 1.2420 7.2807 13 6 1.3880 1.8803 6.0828 14 8 0.7347 3.0674 6.0852 15 6 0.3067 3.5281 7.2777 16 1 0.5599 2.9979 8.1839 17 6 -0.4590 4.6828 7.3408 18 7 -0.7671 5.3288 6.2374 19 14 -1.0515 5.3216 8.9933 20 1 -0.0429 6.2568 9.5531 21 1 -2.3421 6.0340 8.8147 22 1 -1.2404 4.1813 9.9258 23 6 3.5489 1.1987 0.0366 24 6 3.9719 1.3074 -1.4502 25 6 2.9832 2.3592 -2.0117 26 6 1.6505 2.0425 -1.3019 27 1 -0.3633 0.5575 0.8633 28 1 -0.3633 0.4690 -0.9144 29 1 -0.3634 -1.0264 0.0510 30 1 0.4301 2.2230 1.1409 31 1 1.9875 3.0813 1.2191 32 1 2.7485 -0.3942 3.9515 33 1 3.2495 -1.4984 6.0872 34 1 2.5741 -0.4572 8.2110 35 1 1.3851 1.6920 8.2173 36 1 -1.3022 6.1366 6.2816 37 1 3.9744 2.0187 0.6151 38 1 3.8549 0.2386 0.4519 39 1 3.8474 0.3507 -1.9575 40 1 4.9999 1.6598 -1.5347 41 1 2.8772 2.2454 -3.0905 42 1 3.3171 3.3669 -1.7644 43 1 1.0333 1.4042 -1.9341 44 1 1.1204 2.9670 -1.0732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791348142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:20 Heat of formation + Delta-G solvation = -134.399653 kcal Electronic energy + Delta-G solvation = -27414.341010 eV Core-core repulsion = 23490.730049 eV Total energy + Delta-G solvation = -3923.610962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19287 -39.40702 -38.38671 -36.41573 -35.76918 -35.37244 -32.42164 -30.87287 -29.66847 -29.09313 -28.96271 -26.76563 -25.52476 -24.80812 -23.10752 -21.57829 -20.95399 -20.12069 -19.70504 -18.07620 -17.48194 -17.09285 -16.46163 -16.21647 -15.50784 -15.20463 -14.96213 -14.69746 -14.60998 -14.37924 -14.21280 -13.83516 -13.63388 -13.45833 -13.25498 -12.68091 -12.49281 -12.19877 -11.99621 -11.76726 -11.67165 -11.44301 -11.36915 -11.24257 -11.14596 -11.12338 -10.93721 -10.80648 -10.71640 -10.52226 -10.48213 -10.05747 -9.79345 -9.56487 -9.20295 -8.94381 -8.32370 -7.38380 -6.52302 -4.12208 1.60615 2.31019 3.07822 3.09058 3.13721 3.15222 3.46166 3.82906 3.87772 4.39532 4.41306 4.55348 4.68121 4.97117 5.01108 5.12573 5.15291 5.26274 5.29144 5.38444 5.40207 5.47088 5.55312 5.55979 5.61423 5.66524 5.71977 5.75657 5.83244 5.84443 5.88781 5.95764 6.06162 6.13640 6.17787 6.20134 6.57484 6.65152 6.88775 6.99792 7.10702 7.22823 7.23776 7.30198 7.65852 7.86313 8.72847 8.88075 9.57416 10.61516 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.003518 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.579795 B = 7956.687455 C = 9089.425267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.366 6.366 3 C 0.118 3.882 4 C 0.047 3.953 5 O -0.353 6.353 6 C 0.495 3.505 7 O -0.480 6.480 8 C -0.216 4.216 9 C -0.014 4.014 10 C -0.234 4.234 11 C -0.043 4.043 12 C -0.240 4.240 13 C 0.191 3.809 14 O -0.126 6.126 15 C -0.403 4.403 16 H 0.096 0.904 17 C 0.045 3.955 18 N -0.833 5.833 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.265 1.265 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.148 4.148 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.272 0.728 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -8.461 -11.421 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.284 6.284 3 C 0.078 3.922 4 C -0.028 4.028 5 O -0.271 6.271 6 C 0.341 3.659 7 O -0.366 6.366 8 C -0.218 4.218 9 C -0.032 4.032 10 C -0.253 4.253 11 C -0.062 4.062 12 C -0.259 4.259 13 C 0.132 3.868 14 O -0.024 6.024 15 C -0.479 4.479 16 H 0.114 0.886 17 C -0.163 4.163 18 N -0.464 5.464 19 Si 0.766 3.234 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.143 4.143 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.186 4.186 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.554 -7.853 -11.713 15.156 hybrid contribution -0.707 0.687 0.886 1.325 sum 4.848 -7.166 -10.827 13.859 Atomic orbital electron populations 1.22795 0.81596 1.02804 1.00105 1.87986 1.19350 1.26381 1.94732 1.22262 0.94892 0.83425 0.91603 1.23575 1.00972 0.95735 0.82539 1.86575 1.75219 1.51203 1.14125 1.21166 0.77142 0.83953 0.83672 1.90995 1.37440 1.21099 1.87095 1.18028 1.16441 0.99606 0.87775 1.20990 0.92363 0.91792 0.98093 1.20547 1.10153 1.02302 0.92336 1.20970 0.93910 0.93858 0.97457 1.21106 1.08309 0.98484 0.98012 1.19239 0.90068 0.85738 0.91772 1.84146 1.58551 1.26780 1.32918 1.21534 1.33138 1.09756 0.83454 0.88648 1.25408 0.95870 0.95614 0.99408 1.70116 1.33009 1.16160 1.27140 0.85698 0.78523 0.79289 0.79848 1.19659 1.20077 1.18964 1.22332 0.91392 1.03755 0.96869 1.22536 0.98808 0.99229 0.95600 1.22314 0.94516 0.99437 0.99635 1.22743 0.98920 1.00925 0.95990 0.93526 0.94165 0.89597 0.91373 0.90623 0.85641 0.86970 0.86968 0.84847 0.91756 0.90058 0.89794 0.91144 0.91275 0.91426 0.91296 0.90220 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.29 101.05 1.04 1.32 16 2 O -0.37 -5.10 10.18 -44.65 -0.45 -5.56 16 3 C 0.12 1.53 0.79 -89.50 -0.07 1.46 16 4 C 0.05 0.75 3.48 37.16 0.13 0.88 16 5 O -0.35 -6.73 9.11 -44.81 -0.41 -7.14 16 6 C 0.50 11.46 7.89 34.46 0.27 11.73 16 7 O -0.48 -13.08 14.96 -26.59 -0.40 -13.47 16 8 C -0.22 -4.89 5.89 -104.82 -0.62 -5.51 16 9 C -0.01 -0.26 9.61 -39.18 -0.38 -0.64 16 10 C -0.23 -3.98 10.02 -39.61 -0.40 -4.38 16 11 C -0.04 -0.77 10.03 -39.53 -0.40 -1.16 16 12 C -0.24 -5.13 9.16 -39.44 -0.36 -5.50 16 13 C 0.19 4.77 6.66 -38.58 -0.26 4.51 16 14 O -0.13 -3.69 7.84 -21.01 -0.16 -3.85 16 15 C -0.40 -11.28 9.49 30.90 0.29 -10.98 16 16 H 0.10 2.41 5.20 -52.48 -0.27 2.14 16 17 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 18 N -0.83 -24.75 13.67 55.48 0.76 -23.99 16 19 Si 0.94 20.21 29.55 -169.99 -5.02 15.18 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 C -0.11 -1.25 5.88 -25.03 -0.15 -1.40 16 24 C -0.12 -1.16 6.91 -24.70 -0.17 -1.33 16 25 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 26 C -0.15 -1.55 5.71 -25.61 -0.15 -1.70 16 27 H 0.05 0.64 6.31 -51.93 -0.33 0.31 16 28 H 0.04 0.41 6.72 -51.93 -0.35 0.06 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.13 6.61 -51.93 -0.34 0.79 16 31 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.13 2.06 7.61 -52.49 -0.40 1.66 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.13 2.78 5.63 -52.48 -0.30 2.49 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.08 0.97 7.83 -51.93 -0.41 0.57 16 38 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.78 6.70 -51.93 -0.35 0.43 16 44 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -33.41 362.33 -7.78 -41.19 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.07 Total: 4.98 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.47 Total: -12.80 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.76 Total: -23.99 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.42 Total: -30.02 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.41 -7.78 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791348142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.211 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds