Wall clock time and date at job start Tue Mar 31 2020 12:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00495 * 2 1 4 4 C 1.53001 * 110.01549 * 57.15827 * 3 2 1 5 5 O 1.45198 * 109.47098 * 57.96020 * 4 3 2 6 6 C 1.34757 * 116.99841 * 179.97438 * 5 4 3 7 7 O 1.21509 * 119.99992 * 359.97438 * 6 5 4 8 8 C 1.47395 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.39734 * 120.20067 * 0.02562 * 8 6 5 10 10 C 1.37806 * 119.91040 * 179.97438 * 9 8 6 11 11 C 1.38588 * 120.33674 * 0.02562 * 10 9 8 12 12 C 1.38025 * 120.40823 * 359.97438 * 11 10 9 13 13 C 1.38827 * 120.08299 * 0.02562 * 12 11 10 14 14 O 1.35501 * 120.16906 * 180.02562 * 13 12 11 15 15 C 1.34817 * 117.00156 * 355.17851 * 14 13 12 16 16 H 1.08005 * 119.99817 * 5.03159 * 15 14 13 17 17 C 1.38693 * 120.00329 * 185.03456 * 15 14 13 18 18 N 1.31516 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00306 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47516 * 89.99097 * 19 17 15 21 21 H 1.48498 * 109.47462 * 210.00214 * 19 17 15 22 22 H 1.48508 * 109.46618 * 329.99655 * 19 17 15 23 23 C 1.54265 * 110.03215 * 178.55240 * 3 2 1 24 24 C 1.54961 * 104.15988 * 95.75528 * 23 3 2 25 25 C 1.54884 * 102.78026 * 37.88565 * 24 23 3 26 26 C 1.53877 * 110.02947 * 295.77116 * 3 2 1 27 27 H 1.09001 * 109.46967 * 302.85466 * 1 2 3 28 28 H 1.08999 * 109.46869 * 62.84841 * 1 2 3 29 29 H 1.09002 * 109.47417 * 182.84718 * 1 2 3 30 30 H 1.08998 * 109.47129 * 297.95826 * 4 3 2 31 31 H 1.08998 * 109.46935 * 177.95818 * 4 3 2 32 32 H 1.07996 * 120.04426 * 0.02562 * 9 8 6 33 33 H 1.07998 * 119.82986 * 180.02562 * 10 9 8 34 34 H 1.07997 * 119.79435 * 180.26994 * 11 10 9 35 35 H 1.08008 * 119.95586 * 180.02562 * 12 11 10 36 36 H 0.96999 * 120.00344 * 180.02562 * 18 17 15 37 37 H 1.09004 * 110.48156 * 214.39813 * 23 3 2 38 38 H 1.08991 * 110.48696 * 337.04210 * 23 3 2 39 39 H 1.09001 * 110.71829 * 279.57131 * 24 23 3 40 40 H 1.09005 * 110.76750 * 156.22270 * 24 23 3 41 41 H 1.09005 * 110.48757 * 203.41055 * 25 24 23 42 42 H 1.09000 * 110.49040 * 80.76333 * 25 24 23 43 43 H 1.08998 * 110.03287 * 359.94598 * 26 3 2 44 44 H 1.08998 * 110.03213 * 121.37861 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5112 2.1009 1.2078 5 8 1.8432 1.3875 2.4281 6 6 1.4709 1.9579 3.5908 7 8 0.8854 3.0226 3.5851 8 6 1.7741 1.2904 4.8695 9 6 2.4477 0.0662 4.8809 10 6 2.7285 -0.5525 6.0799 11 6 2.3457 0.0331 7.2762 12 6 1.6797 1.2420 7.2807 13 6 1.3880 1.8803 6.0828 14 8 0.7347 3.0674 6.0852 15 6 0.3067 3.5281 7.2777 16 1 0.5599 2.9979 8.1839 17 6 -0.4590 4.6828 7.3408 18 7 -0.7671 5.3288 6.2374 19 14 -1.0515 5.3216 8.9933 20 1 -0.0429 6.2568 9.5531 21 1 -2.3421 6.0340 8.8147 22 1 -1.2404 4.1813 9.9258 23 6 3.5489 1.1987 0.0366 24 6 3.9719 1.3074 -1.4502 25 6 2.9832 2.3592 -2.0117 26 6 1.6505 2.0425 -1.3019 27 1 -0.3633 0.5575 0.8633 28 1 -0.3633 0.4690 -0.9144 29 1 -0.3634 -1.0264 0.0510 30 1 0.4301 2.2230 1.1409 31 1 1.9875 3.0813 1.2191 32 1 2.7485 -0.3942 3.9515 33 1 3.2495 -1.4984 6.0872 34 1 2.5741 -0.4572 8.2110 35 1 1.3851 1.6920 8.2173 36 1 -1.3022 6.1366 6.2816 37 1 3.9744 2.0187 0.6151 38 1 3.8549 0.2386 0.4519 39 1 3.8474 0.3507 -1.9575 40 1 4.9999 1.6598 -1.5347 41 1 2.8772 2.2454 -3.0905 42 1 3.3171 3.3669 -1.7644 43 1 1.0333 1.4042 -1.9341 44 1 1.1204 2.9670 -1.0732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791348142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:19 Heat of formation + Delta-G solvation = -154.319940 kcal Electronic energy + Delta-G solvation = -27415.204819 eV Core-core repulsion = 23490.730049 eV Total energy + Delta-G solvation = -3924.474770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72651 -40.84404 -39.99749 -38.14707 -37.13134 -36.70329 -34.39117 -32.47725 -30.86278 -30.63530 -29.97080 -27.84117 -27.45312 -26.05053 -24.63458 -23.28170 -21.99207 -21.58098 -20.75156 -19.93023 -19.22320 -18.50106 -18.02717 -17.61180 -16.96106 -16.57377 -16.29795 -16.16776 -15.98634 -15.67250 -15.55441 -15.40936 -15.21660 -14.96910 -14.44261 -14.21064 -13.93231 -13.74971 -13.58498 -13.09654 -13.01813 -12.73857 -12.65174 -12.56658 -12.38852 -12.32445 -12.13961 -12.06869 -11.96814 -11.80110 -11.63565 -11.46119 -11.44933 -11.12923 -10.87526 -10.57830 -9.94562 -9.13906 -8.50230 -6.21588 -0.06922 0.67193 1.32238 1.43577 1.51411 1.61948 1.70818 2.12938 2.75816 2.80303 3.13129 3.33872 3.40049 3.46079 3.63521 3.96757 4.00558 4.07764 4.15993 4.17070 4.26387 4.35960 4.41241 4.43967 4.49798 4.51101 4.59650 4.68443 4.79793 4.81975 4.86852 4.91703 5.00505 5.03219 5.06996 5.10869 5.18449 5.24503 5.34028 5.44517 5.45862 5.58345 5.64650 5.91363 6.10521 6.19039 6.88172 6.95193 7.69536 8.70015 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.003518 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.579795 B = 7956.687455 C = 9089.425267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.377 6.377 3 C 0.120 3.880 4 C 0.041 3.959 5 O -0.340 6.340 6 C 0.496 3.504 7 O -0.533 6.533 8 C -0.238 4.238 9 C -0.012 4.012 10 C -0.203 4.203 11 C -0.026 4.026 12 C -0.256 4.256 13 C 0.158 3.842 14 O -0.188 6.188 15 C -0.429 4.429 16 H 0.112 0.888 17 C -0.020 4.020 18 N -0.904 5.904 19 Si 1.024 2.976 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.246 1.246 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.146 4.146 27 H 0.020 0.980 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.273 0.727 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -11.797 -11.224 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.296 6.296 3 C 0.080 3.920 4 C -0.034 4.034 5 O -0.258 6.258 6 C 0.343 3.657 7 O -0.424 6.424 8 C -0.241 4.241 9 C -0.030 4.030 10 C -0.222 4.222 11 C -0.044 4.044 12 C -0.275 4.275 13 C 0.103 3.897 14 O -0.090 6.090 15 C -0.504 4.504 16 H 0.129 0.871 17 C -0.219 4.219 18 N -0.539 5.539 19 Si 0.842 3.158 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.169 1.169 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.184 4.184 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.547 -11.277 -11.530 17.806 hybrid contribution -1.097 1.332 0.692 1.859 sum 6.449 -9.945 -10.838 16.061 Atomic orbital electron populations 1.22908 0.80830 1.03804 1.00029 1.87963 1.20245 1.26686 1.94721 1.22409 0.95666 0.83069 0.90821 1.23933 1.00569 0.96333 0.82527 1.86556 1.74363 1.50815 1.14020 1.21505 0.75946 0.83202 0.85018 1.90977 1.39934 1.23506 1.87958 1.18474 1.17362 1.01253 0.86972 1.21362 0.91135 0.90016 1.00448 1.21214 1.07005 1.03084 0.90857 1.21538 0.90939 0.91803 1.00093 1.21300 1.09447 1.00106 0.96643 1.19964 0.90109 0.85645 0.94029 1.84148 1.61750 1.29380 1.33706 1.22113 1.33765 1.10526 0.84030 0.87064 1.26795 0.95681 0.95548 1.03899 1.70302 1.35816 1.17502 1.30313 0.84536 0.77895 0.79015 0.74379 1.18575 1.19762 1.16907 1.22380 0.90328 1.03134 0.98943 1.22513 0.99732 0.99739 0.93343 1.22341 0.93158 0.99450 1.00636 1.22758 1.00248 1.00637 0.94745 0.96087 0.92052 0.87814 0.92499 0.91304 0.83049 0.81703 0.82039 0.85010 0.91844 0.90832 0.90304 0.90513 0.89667 0.89347 0.91113 0.89037 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.29 113.37 1.17 1.65 16 2 O -0.38 -10.17 10.18 -139.98 -1.42 -11.59 16 3 C 0.12 3.08 0.79 -10.07 -0.01 3.08 16 4 C 0.04 1.39 3.48 71.98 0.25 1.64 16 5 O -0.34 -13.44 9.11 -52.69 -0.48 -13.92 16 6 C 0.50 24.28 7.89 70.23 0.55 24.84 16 7 O -0.53 -31.66 14.96 26.80 0.40 -31.25 16 8 C -0.24 -11.01 5.89 -20.00 -0.12 -11.13 16 9 C -0.01 -0.40 9.61 22.53 0.22 -0.18 16 10 C -0.20 -5.80 10.02 22.25 0.22 -5.57 16 11 C -0.03 -0.80 10.03 22.30 0.22 -0.57 16 12 C -0.26 -10.77 9.16 22.36 0.20 -10.56 16 13 C 0.16 8.17 6.66 22.92 0.15 8.33 16 14 O -0.19 -11.82 7.84 1.02 0.01 -11.82 16 15 C -0.43 -25.45 9.49 67.93 0.64 -24.80 16 16 H 0.11 5.85 5.20 -2.91 -0.02 5.84 16 17 C -0.02 -1.14 5.49 84.85 0.47 -0.67 16 18 N -0.90 -58.03 13.67 21.62 0.30 -57.73 16 19 Si 1.02 43.14 29.55 68.60 2.03 45.16 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 23 C -0.11 -2.50 5.88 31.69 0.19 -2.32 16 24 C -0.12 -1.89 6.91 31.91 0.22 -1.67 16 25 C -0.12 -1.86 6.83 31.67 0.22 -1.65 16 26 C -0.15 -2.91 5.71 31.32 0.18 -2.73 16 27 H 0.02 0.59 6.31 -2.39 -0.02 0.58 16 28 H 0.06 1.17 6.72 -2.39 -0.02 1.15 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.05 6.61 -2.39 -0.02 2.03 16 31 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 32 H 0.15 4.44 7.61 -2.91 -0.02 4.42 16 33 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.13 5.49 5.63 -2.91 -0.02 5.47 16 36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.07 1.76 7.83 -2.39 -0.02 1.74 16 38 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.61 6.70 -2.39 -0.02 1.60 16 44 H 0.07 1.44 7.67 -2.39 -0.02 1.42 16 Total: -1.00 -82.19 362.33 6.62 -75.57 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 1.01 Total: 27.91 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.78 Total: -22.32 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.30 Total: -57.73 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -1.50 Total: -68.59 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -82.19 6.62 -75.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791348142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.751 kcal (2) G-P(sol) polarization free energy of solvation -82.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds