Wall clock time and date at job start Tue Mar 31 2020 12:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00436 * 2 1 4 4 C 1.53006 * 109.47313 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47206 * 180.02562 * 4 3 2 6 6 O 1.20763 * 119.99585 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99830 * 179.97438 * 5 4 3 8 8 O 1.45201 * 109.46786 * 179.97438 * 7 5 4 9 9 C 1.34237 * 116.99802 * 179.97438 * 8 7 5 10 10 O 1.20827 * 119.99620 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99789 * 180.27788 * 9 8 7 12 12 C 1.53003 * 109.47000 * 179.72484 * 11 9 8 13 13 H 1.08994 * 109.47566 * 305.00380 * 12 11 9 14 14 C 1.50704 * 109.46825 * 65.00625 * 12 11 9 15 15 H 1.08003 * 119.99205 * 234.68258 * 14 12 11 16 16 C 1.37875 * 120.00261 * 54.67519 * 14 12 11 17 17 N 1.31509 * 119.99818 * 4.87355 * 16 14 12 18 18 Si 1.86805 * 119.99908 * 184.87342 * 16 14 12 19 19 H 1.48502 * 109.46733 * 90.00261 * 18 16 14 20 20 H 1.48493 * 109.47132 * 209.99892 * 18 16 14 21 21 H 1.48497 * 109.47162 * 330.00461 * 18 16 14 22 22 C 1.50704 * 109.46998 * 184.99873 * 12 11 9 23 23 C 1.38238 * 119.99684 * 151.48797 * 22 12 11 24 24 C 1.38238 * 119.99779 * 179.79108 * 23 22 12 25 25 C 1.38234 * 120.00060 * 0.43807 * 24 23 22 26 26 C 1.38237 * 119.99827 * 359.81434 * 25 24 23 27 27 C 1.38232 * 120.00122 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47395 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46544 * 299.99823 * 1 2 3 30 30 H 1.09002 * 109.47377 * 59.99352 * 1 2 3 31 31 H 1.09005 * 109.47151 * 60.00239 * 3 2 1 32 32 H 1.09002 * 109.47204 * 300.00257 * 3 2 1 33 33 H 1.08999 * 109.46816 * 60.00031 * 4 3 2 34 34 H 1.09002 * 109.46844 * 300.00047 * 4 3 2 35 35 H 1.09001 * 109.46980 * 60.00371 * 7 5 4 36 36 H 1.08990 * 109.47368 * 299.99981 * 7 5 4 37 37 H 1.08994 * 109.47470 * 299.72857 * 11 9 8 38 38 H 1.09003 * 109.47411 * 59.72799 * 11 9 8 39 39 H 0.97002 * 119.99731 * 179.97438 * 17 16 14 40 40 H 1.07997 * 119.99617 * 359.97438 * 23 22 12 41 41 H 1.08000 * 119.99626 * 180.27835 * 24 23 22 42 42 H 1.07992 * 119.99736 * 179.83650 * 25 24 23 43 43 H 1.07997 * 119.99900 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.00017 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1486 2.5612 0.0000 6 8 3.4388 3.5382 0.0013 7 6 5.6473 2.7186 0.0001 8 8 5.9856 4.1306 0.0001 9 6 7.2908 4.4446 0.0008 10 8 8.1228 3.5684 0.0008 11 6 7.7181 5.8896 0.0072 12 6 9.2460 5.9696 0.0135 13 1 9.6363 5.3972 0.8550 14 6 9.7841 5.4005 -1.2740 15 1 10.5163 4.6069 -1.2492 16 6 9.3416 5.8928 -2.4835 17 7 8.5236 6.9220 -2.5148 18 14 9.9042 5.0979 -4.0776 19 1 8.9571 4.0174 -4.4530 20 1 9.9412 6.1199 -5.1542 21 1 11.2614 4.5242 -3.8926 22 6 9.6731 7.4090 0.1437 23 6 10.8782 7.7206 0.7451 24 6 11.2720 9.0406 0.8606 25 6 10.4566 10.0495 0.3830 26 6 9.2491 9.7381 -0.2137 27 6 8.8573 8.4179 -0.3331 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8568 0.6437 -0.8909 34 1 3.8575 0.6434 0.8891 35 1 6.0623 2.2459 -0.8901 36 1 6.0623 2.2452 0.8898 37 1 7.3319 6.3867 -0.8826 38 1 7.3249 6.3809 0.8972 39 1 8.2126 7.2686 -3.3658 40 1 11.5133 6.9326 1.1219 41 1 12.2156 9.2838 1.3264 42 1 10.7631 11.0809 0.4757 43 1 8.6119 10.5263 -0.5864 44 1 7.9142 8.1746 -0.7997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795985474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:09 Heat of formation + Delta-G solvation = -142.533749 kcal Electronic energy + Delta-G solvation = -26322.428240 eV Core-core repulsion = 22398.464558 eV Total energy + Delta-G solvation = -3923.963682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15838 -39.27561 -38.24231 -37.93747 -35.80567 -34.27962 -32.36409 -31.19047 -29.89426 -29.42195 -28.33371 -26.79234 -25.95111 -23.69841 -22.73539 -21.52742 -20.49770 -19.83317 -19.26798 -17.20514 -16.93209 -16.76361 -16.48445 -16.13294 -15.85180 -15.59643 -15.20053 -15.00854 -14.75411 -14.63198 -13.98145 -13.85482 -13.57629 -13.42180 -13.01242 -12.41283 -12.33810 -12.21851 -12.13752 -11.74474 -11.69094 -11.52583 -11.50237 -11.47924 -10.96747 -10.88667 -10.52333 -10.28546 -10.21853 -10.03889 -10.00176 -9.85808 -9.49409 -9.37149 -9.16072 -8.54800 -7.82891 -7.48658 -6.05246 -4.17415 1.77789 2.46720 2.55445 2.80727 3.18999 3.26337 3.33322 3.37559 3.53719 4.21767 4.36656 4.53735 4.69206 4.94057 4.97244 5.02756 5.09554 5.16982 5.19696 5.25167 5.30813 5.35550 5.50025 5.51441 5.79695 5.80465 5.88915 5.99259 6.28639 6.39797 6.46905 6.66662 6.73480 6.77778 6.87929 7.09169 7.16188 7.23190 7.33512 7.39941 7.50221 7.66431 7.86346 8.03631 8.12665 8.24579 8.66807 8.82885 9.47094 10.88744 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002802 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.424436 B = 9989.717917 C =10825.869324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.069 3.931 4 C -0.165 4.165 5 C 0.360 3.640 6 O -0.430 6.430 7 C 0.015 3.985 8 O -0.353 6.353 9 C 0.469 3.531 10 O -0.497 6.497 11 C -0.111 4.111 12 C 0.085 3.915 13 H 0.040 0.960 14 C -0.481 4.481 15 H 0.062 0.938 16 C 0.060 3.940 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.029 4.029 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.069 4.069 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.068 0.932 39 H 0.264 0.736 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 -6.879 5.548 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.008 4.008 4 C -0.202 4.202 5 C 0.232 3.768 6 O -0.301 6.301 7 C -0.060 4.060 8 O -0.272 6.272 9 C 0.313 3.687 10 O -0.382 6.382 11 C -0.149 4.149 12 C 0.067 3.933 13 H 0.059 0.941 14 C -0.519 4.519 15 H 0.080 0.920 16 C -0.141 4.141 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.029 4.029 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.170 4.170 26 C -0.160 4.160 27 C -0.088 4.088 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.160 0.840 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.706 -6.704 5.397 13.736 hybrid contribution 0.361 -0.353 -1.202 1.304 sum -10.345 -7.057 4.195 13.207 Atomic orbital electron populations 1.22746 0.80597 1.02773 1.00265 1.87812 1.20086 1.27878 1.95566 1.22256 0.92292 0.84482 1.01753 1.21876 0.95279 0.96536 1.06506 1.24348 0.90286 0.90355 0.71761 1.90445 1.64019 1.41872 1.33748 1.23127 0.94287 0.83648 1.04920 1.86671 1.29972 1.25071 1.85452 1.24441 0.78623 0.94238 0.71403 1.90583 1.52271 1.50508 1.44842 1.21822 1.00919 0.86901 1.05248 1.17704 0.89190 0.89115 0.97340 0.94130 1.21007 1.24120 1.17471 0.89292 0.91998 1.24941 0.95429 0.94570 0.99148 1.69656 1.33888 1.23096 1.25856 0.86539 0.79245 0.79003 0.83018 1.20823 1.21229 1.19875 1.20218 0.93294 0.96676 0.92744 1.20868 0.97048 0.95381 1.01493 1.20798 0.99092 0.93389 1.02658 1.20783 0.96028 0.97746 1.02482 1.21051 0.96795 0.96914 1.01208 1.21384 1.01525 0.90823 0.95032 0.89508 0.93913 0.93897 0.92377 0.92351 0.87073 0.87114 0.88039 0.88203 0.83990 0.91370 0.92590 0.87595 0.88018 0.88220 0.87958 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.97 10.70 -35.23 -0.38 -4.35 16 3 C 0.07 0.68 5.23 37.16 0.19 0.87 16 4 C -0.16 -1.49 6.01 -27.88 -0.17 -1.65 16 5 C 0.36 4.55 7.24 -29.04 -0.21 4.33 16 6 O -0.43 -6.96 16.12 -13.72 -0.22 -7.18 16 7 C 0.02 0.22 5.88 36.00 0.21 0.43 16 8 O -0.35 -6.76 9.76 -45.94 -0.45 -7.21 16 9 C 0.47 10.07 7.71 36.00 0.28 10.35 16 10 O -0.50 -11.49 14.73 -18.75 -0.28 -11.77 16 11 C -0.11 -2.43 4.19 -27.89 -0.12 -2.54 16 12 C 0.09 2.01 1.97 -92.92 -0.18 1.82 16 13 H 0.04 0.95 7.91 -51.93 -0.41 0.54 16 14 C -0.48 -12.57 7.27 -34.44 -0.25 -12.82 16 15 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 16 C 0.06 1.55 5.12 -17.82 -0.09 1.45 16 17 N -0.89 -22.53 7.99 55.43 0.44 -22.08 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 C -0.03 -0.65 4.69 -104.62 -0.49 -1.14 16 23 C -0.13 -2.71 9.71 -39.58 -0.38 -3.10 16 24 C -0.14 -2.67 10.05 -39.58 -0.40 -3.07 16 25 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 26 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 27 C -0.07 -1.51 7.45 -39.59 -0.30 -1.81 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.37 8.13 -51.93 -0.42 0.95 16 36 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 37 H 0.14 3.34 4.70 -51.93 -0.24 3.10 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.14 3.16 5.18 -52.49 -0.27 2.89 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -30.35 371.24 -8.28 -38.63 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.39 Total: 4.29 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.59 Total: -11.94 kcal Atomic # 7 Polarization: -22.53 SS G_CDS: 0.44 Total: -22.08 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.32 Total: -30.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.35 -8.28 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795985474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.908 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds