Wall clock time and date at job start Tue Mar 31 2020 12:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00436 * 2 1 4 4 C 1.53006 * 109.47313 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47206 * 180.02562 * 4 3 2 6 6 O 1.20763 * 119.99585 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99830 * 179.97438 * 5 4 3 8 8 O 1.45201 * 109.46786 * 179.97438 * 7 5 4 9 9 C 1.34237 * 116.99802 * 179.97438 * 8 7 5 10 10 O 1.20827 * 119.99620 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99789 * 180.27788 * 9 8 7 12 12 C 1.53003 * 109.47000 * 179.72484 * 11 9 8 13 13 H 1.08994 * 109.47566 * 305.00380 * 12 11 9 14 14 C 1.50704 * 109.46825 * 65.00625 * 12 11 9 15 15 H 1.08003 * 119.99205 * 234.68258 * 14 12 11 16 16 C 1.37875 * 120.00261 * 54.67519 * 14 12 11 17 17 N 1.31509 * 119.99818 * 4.87355 * 16 14 12 18 18 Si 1.86805 * 119.99908 * 184.87342 * 16 14 12 19 19 H 1.48502 * 109.46733 * 90.00261 * 18 16 14 20 20 H 1.48493 * 109.47132 * 209.99892 * 18 16 14 21 21 H 1.48497 * 109.47162 * 330.00461 * 18 16 14 22 22 C 1.50704 * 109.46998 * 184.99873 * 12 11 9 23 23 C 1.38238 * 119.99684 * 151.48797 * 22 12 11 24 24 C 1.38238 * 119.99779 * 179.79108 * 23 22 12 25 25 C 1.38234 * 120.00060 * 0.43807 * 24 23 22 26 26 C 1.38237 * 119.99827 * 359.81434 * 25 24 23 27 27 C 1.38232 * 120.00122 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47395 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46544 * 299.99823 * 1 2 3 30 30 H 1.09002 * 109.47377 * 59.99352 * 1 2 3 31 31 H 1.09005 * 109.47151 * 60.00239 * 3 2 1 32 32 H 1.09002 * 109.47204 * 300.00257 * 3 2 1 33 33 H 1.08999 * 109.46816 * 60.00031 * 4 3 2 34 34 H 1.09002 * 109.46844 * 300.00047 * 4 3 2 35 35 H 1.09001 * 109.46980 * 60.00371 * 7 5 4 36 36 H 1.08990 * 109.47368 * 299.99981 * 7 5 4 37 37 H 1.08994 * 109.47470 * 299.72857 * 11 9 8 38 38 H 1.09003 * 109.47411 * 59.72799 * 11 9 8 39 39 H 0.97002 * 119.99731 * 179.97438 * 17 16 14 40 40 H 1.07997 * 119.99617 * 359.97438 * 23 22 12 41 41 H 1.08000 * 119.99626 * 180.27835 * 24 23 22 42 42 H 1.07992 * 119.99736 * 179.83650 * 25 24 23 43 43 H 1.07997 * 119.99900 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.00017 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1486 2.5612 0.0000 6 8 3.4388 3.5382 0.0013 7 6 5.6473 2.7186 0.0001 8 8 5.9856 4.1306 0.0001 9 6 7.2908 4.4446 0.0008 10 8 8.1228 3.5684 0.0008 11 6 7.7181 5.8896 0.0072 12 6 9.2460 5.9696 0.0135 13 1 9.6363 5.3972 0.8550 14 6 9.7841 5.4005 -1.2740 15 1 10.5163 4.6069 -1.2492 16 6 9.3416 5.8928 -2.4835 17 7 8.5236 6.9220 -2.5148 18 14 9.9042 5.0979 -4.0776 19 1 8.9571 4.0174 -4.4530 20 1 9.9412 6.1199 -5.1542 21 1 11.2614 4.5242 -3.8926 22 6 9.6731 7.4090 0.1437 23 6 10.8782 7.7206 0.7451 24 6 11.2720 9.0406 0.8606 25 6 10.4566 10.0495 0.3830 26 6 9.2491 9.7381 -0.2137 27 6 8.8573 8.4179 -0.3331 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8568 0.6437 -0.8909 34 1 3.8575 0.6434 0.8891 35 1 6.0623 2.2459 -0.8901 36 1 6.0623 2.2452 0.8898 37 1 7.3319 6.3867 -0.8826 38 1 7.3249 6.3809 0.8972 39 1 8.2126 7.2686 -3.3658 40 1 11.5133 6.9326 1.1219 41 1 12.2156 9.2838 1.3264 42 1 10.7631 11.0809 0.4757 43 1 8.6119 10.5263 -0.5864 44 1 7.9142 8.1746 -0.7997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795985474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:08 Heat of formation + Delta-G solvation = -157.348878 kcal Electronic energy + Delta-G solvation = -26323.070672 eV Core-core repulsion = 22398.464558 eV Total energy + Delta-G solvation = -3924.606115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56927 -40.57906 -39.79495 -38.72378 -37.38797 -36.05506 -33.23984 -33.03962 -31.45129 -30.76015 -29.74200 -27.93650 -27.29109 -24.88592 -24.17932 -23.08628 -22.06228 -21.04062 -20.77218 -18.68441 -18.32087 -17.93939 -17.80305 -17.41497 -17.11465 -16.95612 -16.76789 -16.03770 -15.89743 -15.87693 -15.45398 -15.37557 -14.98042 -14.84083 -14.25785 -13.86747 -13.74964 -13.70078 -13.35315 -13.26799 -13.09863 -12.84571 -12.82702 -12.72147 -12.43945 -12.32105 -12.17394 -11.92328 -11.75459 -11.70841 -11.34535 -11.12161 -11.01827 -10.81609 -10.70413 -10.47188 -9.40199 -9.13645 -7.98123 -6.16963 0.75682 0.88368 0.99334 1.36771 1.40442 1.47833 1.48763 1.60601 2.42795 2.56028 3.16055 3.25044 3.36696 3.70778 3.96477 4.09666 4.12512 4.22130 4.28830 4.31319 4.41855 4.48664 4.49475 4.50504 4.52637 4.61463 4.76284 4.78971 4.80467 4.82193 4.84438 5.04055 5.12448 5.20672 5.45230 5.53639 5.58916 5.66906 5.85391 5.93946 6.08331 6.09665 6.28894 6.32368 6.38921 6.56821 6.79820 7.04579 7.47409 8.90792 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002802 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.424436 B = 9989.717917 C =10825.869324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.068 3.932 4 C -0.153 4.153 5 C 0.373 3.627 6 O -0.471 6.471 7 C 0.001 3.999 8 O -0.364 6.364 9 C 0.472 3.528 10 O -0.520 6.520 11 C -0.108 4.108 12 C 0.087 3.913 13 H 0.029 0.971 14 C -0.499 4.499 15 H 0.039 0.961 16 C 0.030 3.970 17 N -0.887 5.887 18 Si 0.934 3.066 19 H -0.283 1.283 20 H -0.281 1.281 21 H -0.278 1.278 22 C -0.053 4.053 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.085 4.085 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.086 0.914 39 H 0.263 0.737 40 H 0.109 0.891 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.124 0.876 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -6.671 5.851 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.008 4.008 4 C -0.190 4.190 5 C 0.248 3.752 6 O -0.345 6.345 7 C -0.073 4.073 8 O -0.282 6.282 9 C 0.317 3.683 10 O -0.407 6.407 11 C -0.145 4.145 12 C 0.068 3.932 13 H 0.047 0.953 14 C -0.536 4.536 15 H 0.057 0.943 16 C -0.170 4.170 17 N -0.526 5.526 18 Si 0.761 3.239 19 H -0.209 1.209 20 H -0.207 1.207 21 H -0.204 1.204 22 C -0.054 4.054 23 C -0.164 4.164 24 C -0.157 4.157 25 C -0.165 4.165 26 C -0.165 4.165 27 C -0.103 4.103 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.832 -6.501 5.704 13.861 hybrid contribution 0.355 -0.433 -1.244 1.364 sum -10.477 -6.934 4.461 13.332 Atomic orbital electron populations 1.22956 0.79235 1.04114 1.00822 1.87777 1.21645 1.27690 1.95637 1.22218 0.92781 0.84557 1.01284 1.21842 0.94556 0.93990 1.08618 1.24644 0.89101 0.91464 0.69952 1.90446 1.64470 1.43496 1.36054 1.23636 0.95960 0.81118 1.06575 1.86615 1.28339 1.28307 1.84906 1.24272 0.79213 0.93882 0.70932 1.90560 1.53073 1.51045 1.46045 1.21667 0.99976 0.87613 1.05267 1.17606 0.90005 0.89876 0.95671 0.95306 1.21025 1.24214 1.17462 0.90929 0.94285 1.25357 0.95811 0.95113 1.00709 1.69775 1.33777 1.23075 1.25927 0.85923 0.78541 0.78416 0.80992 1.20876 1.20702 1.20363 1.20217 0.94480 0.96131 0.94522 1.21068 0.96693 0.96836 1.01845 1.21174 1.00279 0.92408 1.01794 1.21205 0.95047 0.99519 1.00726 1.21344 0.97763 0.96460 1.00979 1.21320 1.01213 0.91907 0.95858 0.87832 0.93255 0.93488 0.92720 0.93165 0.85097 0.84533 0.87154 0.85869 0.85531 0.89604 0.92737 0.87315 0.84785 0.84621 0.85816 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.55 10.70 -148.98 -1.59 -9.14 16 3 C 0.07 1.26 5.23 71.98 0.38 1.64 16 4 C -0.15 -2.45 6.01 29.85 0.18 -2.27 16 5 C 0.37 9.08 7.24 29.10 0.21 9.29 16 6 O -0.47 -15.26 16.12 17.39 0.28 -14.98 16 7 C 0.00 0.03 5.88 71.23 0.42 0.45 16 8 O -0.36 -14.04 9.76 -45.11 -0.44 -14.48 16 9 C 0.47 20.66 7.71 71.23 0.55 21.21 16 10 O -0.52 -24.51 14.73 21.96 0.32 -24.19 16 11 C -0.11 -4.82 4.19 29.85 0.12 -4.69 16 12 C 0.09 4.22 1.97 -12.28 -0.02 4.19 16 13 H 0.03 1.40 7.91 -2.39 -0.02 1.38 16 14 C -0.50 -26.76 7.27 25.60 0.19 -26.58 16 15 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 16 C 0.03 1.57 5.12 84.66 0.43 2.01 16 17 N -0.89 -45.62 7.99 21.45 0.17 -45.45 16 18 Si 0.93 43.40 29.54 68.60 2.03 45.43 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 C -0.05 -2.41 4.69 -19.86 -0.09 -2.51 16 23 C -0.15 -6.04 9.71 22.27 0.22 -5.82 16 24 C -0.14 -4.89 10.05 22.27 0.22 -4.66 16 25 C -0.15 -5.00 10.05 22.27 0.22 -4.77 16 26 C -0.15 -5.55 10.05 22.27 0.22 -5.33 16 27 C -0.08 -3.69 7.45 22.27 0.17 -3.52 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 32 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 33 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 2.89 8.13 -2.39 -0.02 2.87 16 36 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 37 H 0.13 6.15 4.70 -2.39 -0.01 6.13 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 40 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 44 H 0.13 5.79 5.18 -2.91 -0.02 5.77 16 Total: -1.00 -65.96 371.24 6.42 -59.54 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.99 Total: 23.06 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.66 Total: -19.80 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.17 Total: -45.45 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -1.43 Total: -62.78 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.96 6.42 -59.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795985474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.810 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds