Wall clock time and date at job start Tue Mar 31 2020 12:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 116.99570 * 2 1 4 4 O 1.21469 * 120.00061 * 0.02562 * 3 2 1 5 5 C 1.47731 * 119.99529 * 180.02562 * 3 2 1 6 6 C 1.39640 * 120.15033 * 359.97438 * 5 3 2 7 7 C 1.37926 * 119.84777 * 180.02562 * 6 5 3 8 8 C 1.38387 * 120.14912 * 359.72419 * 7 6 5 9 9 C 1.38353 * 120.30131 * 0.54949 * 8 7 6 10 10 C 1.50706 * 119.92354 * 179.72378 * 9 8 7 11 11 O 1.45193 * 109.46845 * 269.73065 * 10 9 8 12 12 C 1.34231 * 117.00126 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99644 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00640 * 179.71955 * 12 11 10 15 15 C 1.52996 * 109.47298 * 180.27355 * 14 12 11 16 16 C 1.53005 * 109.46952 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.46953 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46969 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00300 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99923 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00057 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99926 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 90.00190 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00049 * 22 20 18 25 25 H 1.48499 * 109.47134 * 329.99670 * 22 20 18 26 26 C 1.37962 * 120.14988 * 359.45354 * 9 8 7 27 27 H 1.09007 * 109.47296 * 299.99730 * 1 2 3 28 28 H 1.09003 * 109.47563 * 59.99958 * 1 2 3 29 29 H 1.09004 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.08004 * 0.02562 * 6 5 3 31 31 H 1.08001 * 119.92715 * 180.02562 * 7 6 5 32 32 H 1.08003 * 119.85117 * 180.27851 * 8 7 6 33 33 H 1.08997 * 109.46698 * 149.73047 * 10 9 8 34 34 H 1.08997 * 109.46779 * 29.73166 * 10 9 8 35 35 H 1.09000 * 109.47190 * 300.28291 * 14 12 11 36 36 H 1.09006 * 109.46468 * 60.27874 * 14 12 11 37 37 H 1.08994 * 109.47515 * 300.00215 * 15 14 12 38 38 H 1.09006 * 109.46938 * 60.00806 * 15 14 12 39 39 H 1.09000 * 109.47278 * 300.00777 * 16 15 14 40 40 H 1.08998 * 109.46882 * 60.00298 * 16 15 14 41 41 H 1.09008 * 109.47282 * 300.00004 * 17 16 15 42 42 H 1.08998 * 109.47408 * 60.00223 * 17 16 15 43 43 H 0.96999 * 120.00128 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.07739 * 180.24965 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4018 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3024 0.1085 -0.0006 7 6 5.6793 0.1880 -0.0006 8 6 6.3043 1.4227 -0.0063 9 6 5.5538 2.5850 -0.0007 10 6 6.2433 3.9251 -0.0007 11 8 6.4648 4.3554 1.3682 12 6 7.0731 5.5389 1.5441 13 8 7.4090 6.1938 0.5858 14 6 7.3310 6.0541 2.9366 15 6 8.0245 7.4155 2.8564 16 6 8.2869 7.9382 4.2703 17 6 8.9799 9.2999 4.1901 18 6 9.2389 9.8144 5.5827 19 1 8.9388 9.2290 6.4392 20 6 9.8589 11.0327 5.7633 21 7 10.0845 11.4819 6.9786 22 14 10.3772 12.0456 4.2818 23 1 9.2669 12.9493 3.8872 24 1 11.5737 12.8537 4.6289 25 1 10.7031 11.1389 3.1518 26 6 4.1757 2.5200 -0.0006 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8159 -0.8558 -0.0006 31 1 6.2712 -0.7154 -0.0010 32 1 7.3828 1.4793 -0.0109 33 1 5.6181 4.6552 -0.5145 34 1 7.2008 3.8409 -0.5146 35 1 6.3842 6.1591 3.4663 36 1 7.9704 5.3515 3.4712 37 1 8.9713 7.3103 2.3268 38 1 7.3851 8.1180 2.3218 39 1 7.3403 8.0431 4.8004 40 1 8.9264 7.2355 4.8045 41 1 9.9265 9.1952 3.6599 42 1 8.3400 10.0023 3.6560 43 1 10.5210 12.3388 7.1056 44 1 3.5911 3.4280 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:25 Heat of formation + Delta-G solvation = -166.377470 kcal Electronic energy + Delta-G solvation = -24760.073775 eV Core-core repulsion = 20835.076152 eV Total energy + Delta-G solvation = -3924.997624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09831 -40.57623 -39.37756 -36.92544 -36.76475 -35.11552 -32.99706 -32.58942 -31.85204 -30.34713 -28.38444 -27.29833 -25.84156 -24.63086 -22.75743 -22.22189 -21.15454 -20.51746 -20.08896 -18.31970 -17.67567 -17.61630 -16.85577 -16.83013 -16.59588 -16.55893 -16.24788 -15.59208 -14.90198 -14.71187 -14.21485 -14.11769 -14.01518 -13.78926 -13.34341 -13.30137 -12.79124 -12.66185 -12.56399 -12.42867 -12.28748 -12.12755 -11.78957 -11.66354 -11.30304 -11.16811 -11.04540 -10.87627 -10.80346 -10.58978 -10.56045 -9.88640 -9.68872 -9.61570 -9.59410 -9.44298 -9.14122 -8.50347 -6.01323 -3.99076 0.13463 0.65592 1.97707 2.14629 2.19718 2.62542 3.30509 3.34417 3.41561 3.46716 4.06516 4.15138 4.24919 4.48978 4.52326 4.61310 4.62853 4.67537 4.71143 4.81301 4.92673 5.03740 5.06151 5.16892 5.19532 5.24626 5.33328 5.36005 5.64788 5.67894 5.70134 5.83450 5.93084 5.94550 6.04213 6.21723 6.28004 6.34172 6.60824 6.74823 6.94908 7.23155 7.34944 7.47638 7.71540 7.83386 8.57090 9.03649 9.61727 11.12115 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.001708 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.963369 B =16391.199837 C =16866.723815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.502 6.502 5 C -0.131 4.131 6 C -0.053 4.053 7 C -0.134 4.134 8 C -0.057 4.057 9 C -0.105 4.105 10 C 0.106 3.894 11 O -0.356 6.356 12 C 0.461 3.539 13 O -0.506 6.506 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.103 4.103 17 C -0.015 4.015 18 C -0.521 4.521 19 H 0.071 0.929 20 C 0.065 3.935 21 N -0.905 5.905 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 C -0.029 4.029 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.262 0.738 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 -29.392 -17.654 37.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.354 3.646 4 O -0.390 6.390 5 C -0.132 4.132 6 C -0.071 4.071 7 C -0.152 4.152 8 C -0.075 4.075 9 C -0.105 4.105 10 C 0.033 3.967 11 O -0.274 6.274 12 C 0.305 3.695 13 O -0.393 6.393 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.047 4.047 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.039 -28.768 -17.877 37.059 hybrid contribution 0.059 0.688 -0.804 1.059 sum -14.980 -28.080 -18.681 36.904 Atomic orbital electron populations 1.23324 0.75577 1.03950 1.02877 1.86524 1.23871 1.32498 1.84337 1.21173 0.89060 0.81570 0.72812 1.90866 1.66726 1.36001 1.45443 1.19039 0.89112 0.94872 1.10201 1.21547 0.94005 0.97975 0.93561 1.21193 0.94336 0.98104 1.01568 1.21448 1.00704 0.91704 0.93642 1.19465 0.92988 0.94340 1.03727 1.21737 1.00818 0.92448 0.81709 1.86602 1.72066 1.37779 1.30918 1.24233 0.73541 0.78182 0.93591 1.90676 1.48290 1.57048 1.43280 1.21599 1.04228 0.99556 0.89541 1.21612 1.00505 0.92886 0.99891 1.21478 1.00661 0.98793 0.93086 1.19577 0.95438 0.92477 0.97773 1.21179 1.38606 1.04269 0.91817 0.91043 1.25043 0.95362 0.97536 0.95636 1.69920 1.43374 1.20371 1.20749 0.86773 0.78315 0.80432 0.83755 1.20322 1.21435 1.18945 1.21203 0.93796 0.97178 0.92571 0.91596 0.91687 0.87780 0.84141 0.84508 0.84761 0.89958 0.89848 0.87637 0.87660 0.91516 0.91514 0.92571 0.92545 0.96575 0.97005 0.92798 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.73 9.82 -40.53 -0.40 -3.12 16 3 C 0.51 4.89 7.90 34.61 0.27 5.17 16 4 O -0.50 -6.18 16.14 -19.24 -0.31 -6.49 16 5 C -0.13 -1.11 5.87 -104.98 -0.62 -1.73 16 6 C -0.05 -0.33 9.62 -39.17 -0.38 -0.71 16 7 C -0.13 -0.73 10.03 -39.64 -0.40 -1.12 16 8 C -0.06 -0.37 9.69 -39.48 -0.38 -0.75 16 9 C -0.11 -0.87 5.51 -104.68 -0.58 -1.45 16 10 C 0.11 1.01 5.59 36.01 0.20 1.21 16 11 O -0.36 -4.15 10.20 -39.26 -0.40 -4.55 16 12 C 0.46 6.15 7.96 36.00 0.29 6.44 16 13 O -0.51 -8.16 15.73 -18.76 -0.30 -8.45 16 14 C -0.11 -1.40 5.81 -27.89 -0.16 -1.56 16 15 C -0.11 -1.78 4.50 -26.73 -0.12 -1.91 16 16 C -0.10 -1.97 5.15 -26.73 -0.14 -2.10 16 17 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 18 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 22 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 26 C -0.03 -0.26 9.24 -39.17 -0.36 -0.62 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.14 0.62 7.61 -52.48 -0.40 0.22 16 31 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 32 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.39 7.20 -51.92 -0.37 0.02 16 42 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.14 1.30 7.65 -52.49 -0.40 0.90 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -35.37 382.47 -8.02 -43.39 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -6.64 Total: -4.67 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.85 Total: -11.92 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.77 Total: -27.48 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.40 Total: -22.62 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.37 -8.02 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.985 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds