Wall clock time and date at job start Tue Mar 31 2020 12:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99939 * 2 1 4 4 O 1.20825 * 120.00359 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99822 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46953 * 60.00296 * 5 3 2 7 7 O 1.45194 * 109.47297 * 180.02562 * 5 3 2 8 8 C 1.34227 * 117.00386 * 270.00809 * 7 5 3 9 9 O 1.20826 * 119.99728 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00402 * 180.02562 * 8 7 5 11 11 C 1.52994 * 109.47389 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47434 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47052 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46670 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99630 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00172 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99688 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47201 * 59.99779 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46959 * 299.99865 * 18 16 14 22 22 C 1.50698 * 109.47294 * 300.00853 * 5 3 2 23 23 C 1.38242 * 119.99447 * 279.72327 * 22 5 3 24 24 C 1.38236 * 119.99527 * 179.80964 * 23 22 5 25 25 C 1.38236 * 120.00131 * 0.39723 * 24 23 22 26 26 C 1.38232 * 119.99934 * 359.85602 * 25 24 23 27 27 C 1.38233 * 120.00422 * 359.95735 * 26 25 24 28 28 H 1.09002 * 109.46675 * 299.99728 * 1 2 3 29 29 H 1.09004 * 109.46680 * 59.99179 * 1 2 3 30 30 H 1.08992 * 109.47471 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47098 * 299.99388 * 10 8 7 32 32 H 1.09002 * 109.46973 * 59.99398 * 10 8 7 33 33 H 1.08995 * 109.47627 * 300.00317 * 11 10 8 34 34 H 1.09002 * 109.46946 * 60.00127 * 11 10 8 35 35 H 1.09002 * 109.46837 * 300.00559 * 12 11 10 36 36 H 1.08993 * 109.46757 * 59.99973 * 12 11 10 37 37 H 1.08995 * 109.47246 * 299.99542 * 13 12 11 38 38 H 1.09002 * 109.47392 * 60.00298 * 13 12 11 39 39 H 0.97004 * 120.00007 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.99919 * 359.97438 * 23 22 5 41 41 H 1.08002 * 120.00095 * 180.23068 * 24 23 22 42 42 H 1.07998 * 120.00011 * 179.83479 * 25 24 23 43 43 H 1.08001 * 120.00121 * 179.97438 * 26 25 24 44 44 H 1.07992 * 120.00535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7805 -0.8892 7 8 3.9782 2.6671 0.0011 8 6 4.1513 3.2519 -1.1946 9 8 3.9654 2.6210 -2.2082 10 6 4.5786 4.6949 -1.2730 11 6 4.7025 5.1112 -2.7400 12 6 5.1358 6.5765 -2.8196 13 6 5.2590 6.9929 -4.2866 14 6 5.6864 8.4360 -4.3649 15 1 5.8530 8.9998 -3.4589 16 6 5.8637 9.0367 -5.5932 17 7 5.6604 8.3503 -6.6964 18 14 6.3927 10.8257 -5.6903 19 1 7.7061 10.9907 -5.0172 20 1 6.5125 11.2299 -7.1142 21 1 5.3807 11.6784 -5.0165 22 6 4.1048 0.5917 1.2313 23 6 4.1094 1.2555 2.4439 24 6 4.5996 0.6275 3.5736 25 6 5.0928 -0.6611 3.4891 26 6 5.0930 -1.3228 2.2754 27 6 4.5993 -0.6964 1.1465 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8359 5.3212 -0.7788 32 1 5.5426 4.8157 -0.7787 33 1 5.4454 4.4850 -3.2340 34 1 3.7387 4.9904 -3.2346 35 1 4.3926 7.2024 -2.3257 36 1 6.0994 6.6977 -2.3249 37 1 6.0021 6.3671 -4.7808 38 1 4.2952 6.8717 -4.7810 39 1 5.7855 8.7729 -7.5606 40 1 3.7275 2.2636 2.5091 41 1 4.5997 1.1446 4.5218 42 1 5.4782 -1.1508 4.3712 43 1 5.4787 -2.3295 2.2093 44 1 4.5991 -1.2135 0.1984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:33 Heat of formation + Delta-G solvation = -162.325940 kcal Electronic energy + Delta-G solvation = -25925.453704 eV Core-core repulsion = 22000.631767 eV Total energy + Delta-G solvation = -3924.821936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44709 -40.16689 -39.43887 -37.17282 -36.45000 -35.00088 -33.01914 -32.60135 -31.31529 -29.97587 -28.87262 -27.20555 -25.74871 -23.29864 -22.84092 -22.62288 -21.24899 -20.46072 -20.03373 -18.41292 -17.86547 -17.66935 -17.12381 -16.58628 -16.23536 -16.15109 -15.89662 -15.35045 -14.92172 -14.56029 -14.43443 -14.01540 -13.82225 -13.76346 -13.42119 -13.08078 -12.78597 -12.58465 -12.53901 -12.28569 -11.79513 -11.73088 -11.69976 -11.59288 -11.42353 -11.15765 -10.99116 -10.73626 -10.61094 -10.56953 -10.46307 -10.45083 -9.63974 -9.31912 -9.30870 -9.23982 -9.02280 -8.30363 -5.95270 -3.97865 0.76780 1.00743 1.74314 1.83797 2.24142 2.70609 3.36092 3.40282 3.40632 3.42775 3.98319 4.35720 4.38373 4.49120 4.58240 4.63703 4.74255 4.77034 4.79102 4.86526 5.07529 5.16980 5.18267 5.24019 5.26846 5.40144 5.46284 5.62584 5.68508 5.93118 5.98649 6.05222 6.05770 6.10656 6.16884 6.24324 6.46677 6.53603 6.77128 6.94807 7.16883 7.29172 7.65261 7.72999 7.88031 8.05395 8.47079 9.09407 9.65797 11.16028 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019700 B = 0.002165 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.943190 B =12931.107580 C =13715.590472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.455 3.545 4 O -0.486 6.486 5 C 0.143 3.857 6 H 0.131 0.869 7 O -0.327 6.327 8 C 0.464 3.536 9 O -0.500 6.500 10 C -0.108 4.108 11 C -0.109 4.109 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.096 4.096 23 C -0.086 4.086 24 C -0.122 4.122 25 C -0.107 4.107 26 C -0.121 4.121 27 C -0.088 4.088 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 -23.052 22.003 32.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.296 3.704 4 O -0.371 6.371 5 C 0.086 3.914 6 H 0.149 0.851 7 O -0.244 6.244 8 C 0.308 3.692 9 O -0.386 6.386 10 C -0.146 4.146 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.096 4.096 23 C -0.104 4.104 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.139 4.139 27 C -0.106 4.106 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.532 -22.948 21.493 31.924 hybrid contribution -0.046 0.961 -0.273 1.000 sum -5.577 -21.987 21.220 31.062 Atomic orbital electron populations 1.23344 0.75617 1.03982 1.02891 1.86473 1.23861 1.32403 1.83939 1.23679 0.91582 0.82170 0.73006 1.90724 1.66372 1.36208 1.43813 1.20572 0.87571 0.82742 1.00530 0.85132 1.86729 1.78059 1.24558 1.35026 1.24477 0.72957 0.91210 0.80589 1.90675 1.46992 1.64960 1.35934 1.21650 1.04099 0.86561 1.02263 1.21602 1.02936 0.98827 0.91279 1.21650 0.99717 0.91899 1.01462 1.19093 0.97238 0.95940 0.89413 1.21236 1.45864 0.96734 0.92104 0.92729 1.25042 0.95648 0.97978 0.95901 1.69963 1.49559 1.36524 0.97442 0.86659 0.79156 0.85304 0.76861 1.20264 1.21335 1.20265 1.19130 1.02816 0.95039 0.92636 1.21112 0.97615 1.00048 0.91613 1.21191 0.99052 0.95280 0.98488 1.21291 0.98367 0.94916 0.97907 1.21121 1.00091 1.00248 0.92452 1.20978 0.96681 0.93472 0.99512 0.91694 0.91547 0.87691 0.87452 0.87530 0.91431 0.91473 0.93134 0.93127 0.96535 0.96542 0.92977 0.85100 0.85469 0.85677 0.85363 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.77 10.48 -39.25 -0.41 -4.19 16 3 C 0.45 5.92 7.29 36.01 0.26 6.18 16 4 O -0.49 -7.69 16.21 -25.41 -0.41 -8.10 16 5 C 0.14 1.69 2.67 -29.03 -0.08 1.62 16 6 H 0.13 1.48 7.02 -51.93 -0.36 1.11 16 7 O -0.33 -4.36 8.74 -45.91 -0.40 -4.76 16 8 C 0.46 6.97 7.88 36.00 0.28 7.26 16 9 O -0.50 -8.78 15.20 -18.75 -0.29 -9.07 16 10 C -0.11 -1.50 5.81 -27.89 -0.16 -1.67 16 11 C -0.11 -1.92 4.50 -26.73 -0.12 -2.04 16 12 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.10 -0.94 4.90 -104.62 -0.51 -1.46 16 23 C -0.09 -0.80 9.35 -39.58 -0.37 -1.17 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.11 -0.70 10.05 -39.58 -0.40 -1.09 16 26 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 27 C -0.09 -0.71 9.67 -39.58 -0.38 -1.09 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.13 1.23 7.77 -52.49 -0.41 0.82 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.83 8.04 -52.49 -0.42 0.41 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -35.16 384.76 -8.54 -43.70 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.65 Total: -3.12 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.89 Total: -10.41 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.51 Total: -26.12 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.16 -8.54 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.629 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds