Wall clock time and date at job start Tue Mar 31 2020 12:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99939 * 2 1 4 4 O 1.20825 * 120.00359 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99822 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46953 * 60.00296 * 5 3 2 7 7 O 1.45194 * 109.47297 * 180.02562 * 5 3 2 8 8 C 1.34227 * 117.00386 * 270.00809 * 7 5 3 9 9 O 1.20826 * 119.99728 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00402 * 180.02562 * 8 7 5 11 11 C 1.52994 * 109.47389 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47434 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47052 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46670 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00334 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99630 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00172 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99688 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47201 * 59.99779 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46959 * 299.99865 * 18 16 14 22 22 C 1.50698 * 109.47294 * 300.00853 * 5 3 2 23 23 C 1.38242 * 119.99447 * 279.72327 * 22 5 3 24 24 C 1.38236 * 119.99527 * 179.80964 * 23 22 5 25 25 C 1.38236 * 120.00131 * 0.39723 * 24 23 22 26 26 C 1.38232 * 119.99934 * 359.85602 * 25 24 23 27 27 C 1.38233 * 120.00422 * 359.95735 * 26 25 24 28 28 H 1.09002 * 109.46675 * 299.99728 * 1 2 3 29 29 H 1.09004 * 109.46680 * 59.99179 * 1 2 3 30 30 H 1.08992 * 109.47471 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47098 * 299.99388 * 10 8 7 32 32 H 1.09002 * 109.46973 * 59.99398 * 10 8 7 33 33 H 1.08995 * 109.47627 * 300.00317 * 11 10 8 34 34 H 1.09002 * 109.46946 * 60.00127 * 11 10 8 35 35 H 1.09002 * 109.46837 * 300.00559 * 12 11 10 36 36 H 1.08993 * 109.46757 * 59.99973 * 12 11 10 37 37 H 1.08995 * 109.47246 * 299.99542 * 13 12 11 38 38 H 1.09002 * 109.47392 * 60.00298 * 13 12 11 39 39 H 0.97004 * 120.00007 * 180.02562 * 17 16 14 40 40 H 1.07998 * 119.99919 * 359.97438 * 23 22 5 41 41 H 1.08002 * 120.00095 * 180.23068 * 24 23 22 42 42 H 1.07998 * 120.00011 * 179.83479 * 25 24 23 43 43 H 1.08001 * 120.00121 * 179.97438 * 26 25 24 44 44 H 1.07992 * 120.00535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7805 -0.8892 7 8 3.9782 2.6671 0.0011 8 6 4.1513 3.2519 -1.1946 9 8 3.9654 2.6210 -2.2082 10 6 4.5786 4.6949 -1.2730 11 6 4.7025 5.1112 -2.7400 12 6 5.1358 6.5765 -2.8196 13 6 5.2590 6.9929 -4.2866 14 6 5.6864 8.4360 -4.3649 15 1 5.8530 8.9998 -3.4589 16 6 5.8637 9.0367 -5.5932 17 7 5.6604 8.3503 -6.6964 18 14 6.3927 10.8257 -5.6903 19 1 7.7061 10.9907 -5.0172 20 1 6.5125 11.2299 -7.1142 21 1 5.3807 11.6784 -5.0165 22 6 4.1048 0.5917 1.2313 23 6 4.1094 1.2555 2.4439 24 6 4.5996 0.6275 3.5736 25 6 5.0928 -0.6611 3.4891 26 6 5.0930 -1.3228 2.2754 27 6 4.5993 -0.6964 1.1465 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8359 5.3212 -0.7788 32 1 5.5426 4.8157 -0.7787 33 1 5.4454 4.4850 -3.2340 34 1 3.7387 4.9904 -3.2346 35 1 4.3926 7.2024 -2.3257 36 1 6.0994 6.6977 -2.3249 37 1 6.0021 6.3671 -4.7808 38 1 4.2952 6.8717 -4.7810 39 1 5.7855 8.7729 -7.5606 40 1 3.7275 2.2636 2.5091 41 1 4.5997 1.1446 4.5218 42 1 5.4782 -1.1508 4.3712 43 1 5.4787 -2.3295 2.2093 44 1 4.5991 -1.2135 0.1984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:32 Heat of formation + Delta-G solvation = -180.559771 kcal Electronic energy + Delta-G solvation = -25926.244382 eV Core-core repulsion = 22000.631767 eV Total energy + Delta-G solvation = -3925.612614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45944 -41.24187 -40.08235 -38.22255 -37.50564 -36.67815 -34.70169 -33.69288 -31.87843 -31.66790 -29.64301 -28.22640 -27.32027 -24.74473 -23.62789 -23.45817 -22.37832 -21.76243 -21.45512 -19.32924 -19.00556 -18.56063 -18.38748 -17.99833 -17.45475 -17.31162 -16.82738 -16.48670 -16.01549 -15.92475 -15.61182 -14.94163 -14.68994 -14.57486 -14.41383 -14.30985 -13.99588 -13.73386 -13.65127 -13.54390 -13.29690 -13.15258 -12.87114 -12.78939 -12.40570 -12.28418 -12.23609 -12.21989 -12.00492 -11.98586 -11.84437 -11.60232 -11.40317 -11.31940 -11.08769 -10.54001 -9.88352 -9.87443 -8.18517 -6.30341 0.14360 0.44362 0.76451 0.81844 1.14954 1.40750 1.44611 1.52365 1.77626 2.42266 2.79725 3.14329 3.19708 3.50494 3.54386 3.60647 3.90157 4.04480 4.07102 4.11334 4.17723 4.20940 4.27753 4.45340 4.55491 4.59132 4.60197 4.63187 4.73243 4.83160 4.89681 4.99751 5.04466 5.11352 5.11615 5.30412 5.32492 5.47382 5.50681 5.55576 5.57018 5.77056 5.87794 6.00311 6.25239 6.31094 6.51574 6.87716 7.39085 8.93463 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019700 B = 0.002165 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.943190 B =12931.107580 C =13715.590472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.455 3.545 4 O -0.523 6.523 5 C 0.140 3.860 6 H 0.133 0.867 7 O -0.323 6.323 8 C 0.466 3.534 9 O -0.533 6.533 10 C -0.101 4.101 11 C -0.100 4.100 12 C -0.096 4.096 13 C 0.019 3.981 14 C -0.542 4.542 15 H 0.066 0.934 16 C -0.006 4.006 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.113 4.113 23 C -0.104 4.104 24 C -0.126 4.126 25 C -0.104 4.104 26 C -0.120 4.120 27 C -0.096 4.096 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.067 0.933 37 H -0.011 1.011 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 -23.553 24.608 34.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.298 3.702 4 O -0.411 6.411 5 C 0.083 3.917 6 H 0.150 0.850 7 O -0.240 6.240 8 C 0.311 3.689 9 O -0.422 6.422 10 C -0.137 4.137 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.018 4.018 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.122 4.122 26 C -0.138 4.138 27 C -0.114 4.114 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.007 0.993 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.139 0.861 41 H 0.164 0.836 42 H 0.171 0.829 43 H 0.173 0.827 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.677 -23.473 24.136 33.991 hybrid contribution -0.357 0.976 -1.046 1.475 sum -5.034 -22.496 23.090 32.628 Atomic orbital electron populations 1.23674 0.73951 1.06346 1.02629 1.86470 1.25491 1.31142 1.83247 1.23969 0.92090 0.82237 0.71936 1.90697 1.67237 1.37371 1.45832 1.20791 0.87108 0.81840 1.01925 0.84997 1.86701 1.77693 1.25703 1.33888 1.24620 0.72175 0.91513 0.80545 1.90663 1.48615 1.65849 1.37076 1.21551 1.06421 0.86168 0.99600 1.21371 1.01389 0.96995 0.94031 1.21439 1.01066 0.93601 0.97227 1.19047 0.94532 0.95146 0.93085 1.21723 1.45716 0.97843 0.92744 0.91577 1.26079 0.95557 1.03268 0.95470 1.70118 1.50680 1.38829 0.98133 0.85449 0.79305 0.78929 0.77043 1.18857 1.21088 1.19053 1.19106 1.04510 0.95923 0.91821 1.21166 0.98722 1.00008 0.92306 1.21455 0.98478 0.95881 0.98554 1.21681 0.97140 0.94446 0.98903 1.21482 0.99105 1.01305 0.91920 1.21205 0.96530 0.92868 1.00798 0.91529 0.92313 0.84001 0.85565 0.84415 0.92495 0.93444 0.92055 0.91472 0.99289 0.99671 0.92854 0.86106 0.83607 0.82876 0.82733 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.43 10.48 -51.38 -0.54 -7.97 16 3 C 0.46 12.11 7.29 71.24 0.52 12.63 16 4 O -0.52 -17.11 16.21 28.33 0.46 -16.65 16 5 C 0.14 3.37 2.67 29.10 0.08 3.45 16 6 H 0.13 3.08 7.02 -2.39 -0.02 3.06 16 7 O -0.32 -8.67 8.74 -45.02 -0.39 -9.07 16 8 C 0.47 14.07 7.88 71.24 0.56 14.63 16 9 O -0.53 -19.33 15.20 21.96 0.33 -19.00 16 10 C -0.10 -2.68 5.81 29.85 0.17 -2.50 16 11 C -0.10 -3.57 4.50 30.59 0.14 -3.43 16 12 C -0.10 -3.89 5.15 30.60 0.16 -3.73 16 13 C 0.02 1.04 4.97 29.85 0.15 1.19 16 14 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 15 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 16 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 17 N -0.94 -58.98 13.29 21.45 0.28 -58.69 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 C -0.11 -2.18 4.90 -19.86 -0.10 -2.28 16 23 C -0.10 -1.87 9.35 22.27 0.21 -1.66 16 24 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 25 C -0.10 -1.05 10.05 22.27 0.22 -0.82 16 26 C -0.12 -1.28 10.05 22.27 0.22 -1.06 16 27 C -0.10 -1.41 9.67 22.27 0.22 -1.19 16 28 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 30 H 0.14 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.13 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 34 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.26 15.54 8.31 -92.70 -0.77 14.76 16 40 H 0.12 2.31 7.77 -2.91 -0.02 2.29 16 41 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.15 0.66 8.06 -2.91 -0.02 0.64 16 43 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 44 H 0.14 1.62 8.04 -2.91 -0.02 1.60 16 Total: -1.00 -78.44 384.76 7.82 -70.62 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.98 Total: 9.48 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.67 Total: -15.72 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.28 Total: -58.69 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.14 Total: -52.67 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -78.44 7.82 -70.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.943 kcal (2) G-P(sol) polarization free energy of solvation -78.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds