Wall clock time and date at job start Tue Mar 31 2020 12:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00492 * 2 1 4 4 O 1.20822 * 120.00002 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00458 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46866 * 304.99993 * 5 3 2 7 7 O 1.45193 * 109.47439 * 184.99873 * 5 3 2 8 8 C 1.34227 * 117.00344 * 89.99781 * 7 5 3 9 9 O 1.20826 * 119.99820 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00479 * 180.02562 * 8 7 5 11 11 C 1.53001 * 109.47494 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47423 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47423 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47160 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00087 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99516 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00543 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99749 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47238 * 89.99470 * 18 16 14 20 20 H 1.48494 * 109.47396 * 210.00024 * 18 16 14 21 21 H 1.48507 * 109.47113 * 329.99730 * 18 16 14 22 22 C 1.50702 * 109.46995 * 64.99368 * 5 3 2 23 23 C 1.38234 * 120.00271 * 265.00049 * 22 5 3 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 5 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 84.98177 * 22 5 3 28 28 H 1.09004 * 109.46613 * 300.00403 * 1 2 3 29 29 H 1.08996 * 109.46781 * 59.99785 * 1 2 3 30 30 H 1.08994 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47216 * 300.00031 * 10 8 7 32 32 H 1.09001 * 109.47346 * 60.00061 * 10 8 7 33 33 H 1.09001 * 109.47224 * 299.99833 * 11 10 8 34 34 H 1.08996 * 109.47172 * 59.99818 * 11 10 8 35 35 H 1.09001 * 109.46682 * 300.00040 * 12 11 10 36 36 H 1.08996 * 109.47198 * 59.99708 * 12 11 10 37 37 H 1.08996 * 109.46961 * 300.00118 * 13 12 11 38 38 H 1.09007 * 109.46843 * 60.00054 * 13 12 11 39 39 H 0.97003 * 120.00484 * 180.02562 * 17 16 14 40 40 H 1.08001 * 119.99769 * 359.97438 * 23 22 5 41 41 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 43 43 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00489 * 0.02562 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9604 0.7050 0.8410 7 8 3.9785 2.6619 0.1188 8 6 4.1574 3.1398 1.3603 9 8 3.9760 2.4226 2.3156 10 6 4.5843 4.5708 1.5626 11 6 4.7142 4.8575 3.0599 12 6 5.1470 6.3105 3.2654 13 6 5.2775 6.5970 4.7627 14 6 5.7044 8.0280 4.9649 15 1 5.8669 8.6689 4.1110 16 6 5.8886 8.5187 6.2402 17 7 5.6913 7.7381 7.2800 18 14 6.4185 10.2923 6.4910 19 1 5.2165 11.1576 6.5992 20 1 7.2186 10.3984 7.7375 21 1 7.2418 10.7311 5.3356 22 6 4.0990 0.7015 -1.2886 23 6 4.4975 -0.6210 -1.3440 24 6 4.9854 -1.1469 -2.5255 25 6 5.0744 -0.3504 -3.6519 26 6 4.6750 0.9718 -3.5968 27 6 4.1886 1.4982 -2.4147 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 5.5457 4.7354 1.0761 32 1 3.8388 5.2372 1.1289 33 1 3.7525 4.6931 3.5461 34 1 5.4594 4.1911 3.4942 35 1 6.1085 6.4753 2.7791 36 1 4.4014 6.9765 2.8313 37 1 4.3162 6.4320 5.2492 38 1 6.0234 5.9309 5.1964 39 1 5.8205 8.0834 8.1773 40 1 4.4275 -1.2433 -0.4641 41 1 5.2964 -2.1802 -2.5690 42 1 5.4598 -0.7600 -4.5739 43 1 4.7448 1.5942 -4.4766 44 1 3.8774 2.5314 -2.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:35 Heat of formation + Delta-G solvation = -180.678401 kcal Electronic energy + Delta-G solvation = -25924.065614 eV Core-core repulsion = 21998.447855 eV Total energy + Delta-G solvation = -3925.617759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.46199 -41.24733 -40.08486 -38.22669 -37.50886 -36.67999 -34.70382 -33.69085 -31.87847 -31.66829 -29.65410 -28.22814 -27.32349 -24.75552 -23.62122 -23.45510 -22.37196 -21.76020 -21.44996 -19.34580 -18.99920 -18.57281 -18.39116 -18.00924 -17.45466 -17.30407 -16.83056 -16.48321 -16.00952 -15.92986 -15.61252 -14.95951 -14.70533 -14.58146 -14.39569 -14.30617 -13.99789 -13.73952 -13.64611 -13.55677 -13.30460 -13.14577 -12.88263 -12.80812 -12.37343 -12.27763 -12.24056 -12.22134 -12.00539 -11.98255 -11.84395 -11.61641 -11.40609 -11.31644 -11.08051 -10.54791 -9.88529 -9.87120 -8.18791 -6.30486 0.13688 0.44275 0.78779 0.80840 1.12530 1.40761 1.42726 1.53822 1.76731 2.42064 2.79387 3.14198 3.20367 3.49357 3.54839 3.61238 3.89847 4.04481 4.07046 4.11472 4.17607 4.20895 4.27746 4.45281 4.55336 4.59093 4.60177 4.63304 4.73308 4.83157 4.89762 4.99020 5.04383 5.11566 5.11715 5.30409 5.32475 5.47184 5.50911 5.55737 5.56958 5.77027 5.87796 6.00165 6.25206 6.30790 6.51150 6.87805 7.39004 8.93398 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.002168 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.057148 B =12912.487846 C =13714.652422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.455 3.545 4 O -0.522 6.522 5 C 0.140 3.860 6 H 0.132 0.868 7 O -0.323 6.323 8 C 0.466 3.534 9 O -0.533 6.533 10 C -0.101 4.101 11 C -0.100 4.100 12 C -0.096 4.096 13 C 0.019 3.981 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.259 1.259 22 C -0.115 4.115 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.104 4.104 26 C -0.126 4.126 27 C -0.104 4.104 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.061 0.939 37 H -0.015 1.015 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.141 0.859 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 -21.324 -26.322 34.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.297 3.703 4 O -0.410 6.410 5 C 0.084 3.916 6 H 0.150 0.850 7 O -0.240 6.240 8 C 0.311 3.689 9 O -0.422 6.422 10 C -0.137 4.137 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.018 4.018 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.138 4.138 25 C -0.122 4.122 26 C -0.144 4.144 27 C -0.122 4.122 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.003 0.997 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.164 0.836 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.831 -21.284 -25.874 33.850 hybrid contribution -0.348 0.885 1.125 1.473 sum -5.179 -20.399 -24.749 32.488 Atomic orbital electron populations 1.23672 0.73934 1.06361 1.02622 1.86463 1.25517 1.31193 1.83256 1.23974 0.92089 0.82251 0.71947 1.90692 1.67227 1.37340 1.45785 1.20768 0.87111 0.82602 1.01137 0.85041 1.86694 1.77652 1.27682 1.31925 1.24635 0.72194 0.92006 0.80074 1.90666 1.48689 1.60305 1.42515 1.21552 1.06436 0.86939 0.98814 1.21371 1.01399 0.97454 0.93565 1.21438 1.01062 0.93991 0.96850 1.19052 0.94544 0.95314 0.92929 1.21748 1.45589 0.97931 0.92635 0.91582 1.26074 0.95591 1.02784 0.95942 1.70121 1.50798 1.38071 0.98783 0.85396 0.78470 0.78985 0.77875 1.19845 1.20915 1.18323 1.19119 1.04940 0.95765 0.91726 1.21195 0.96941 0.93124 1.00173 1.21482 0.98920 1.01495 0.91934 1.21686 0.97285 0.93592 0.99641 1.21464 0.98705 0.96549 0.97705 1.21180 0.98387 0.99981 0.92615 0.92340 0.91504 0.83988 0.84404 0.85546 0.93414 0.92498 0.91496 0.92033 0.99654 0.99277 0.92857 0.84069 0.82709 0.82875 0.83601 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.46 10.55 -51.36 -0.54 -8.00 16 3 C 0.45 12.11 7.24 71.24 0.52 12.62 16 4 O -0.52 -17.00 16.26 28.33 0.46 -16.54 16 5 C 0.14 3.38 2.68 29.10 0.08 3.46 16 6 H 0.13 3.07 7.06 -2.39 -0.02 3.05 16 7 O -0.32 -8.64 8.57 -45.03 -0.39 -9.02 16 8 C 0.47 13.97 7.92 71.23 0.56 14.53 16 9 O -0.53 -19.21 15.20 21.96 0.33 -18.87 16 10 C -0.10 -2.66 5.81 29.85 0.17 -2.49 16 11 C -0.10 -3.55 4.50 30.59 0.14 -3.42 16 12 C -0.10 -3.88 5.15 30.59 0.16 -3.72 16 13 C 0.02 1.02 4.97 29.85 0.15 1.17 16 14 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 15 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 16 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 17 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 C -0.12 -2.23 4.98 -19.87 -0.10 -2.33 16 23 C -0.10 -1.42 9.68 22.27 0.22 -1.20 16 24 C -0.12 -1.29 10.05 22.27 0.22 -1.07 16 25 C -0.10 -1.06 10.05 22.27 0.22 -0.84 16 26 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 27 C -0.10 -1.88 9.35 22.27 0.21 -1.67 16 28 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 29 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 30 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.05 1.85 8.10 -2.39 -0.02 1.84 16 34 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 42 H 0.15 0.68 8.06 -2.91 -0.02 0.65 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.12 2.36 7.63 -2.91 -0.02 2.34 16 Total: -1.00 -78.28 384.72 7.82 -70.46 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.98 Total: 9.43 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.66 Total: -15.81 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.28 Total: -58.63 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -0.13 Total: -52.44 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -78.28 7.82 -70.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.220 kcal (2) G-P(sol) polarization free energy of solvation -78.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds