Wall clock time and date at job start Tue Mar 31 2020 12:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99915 * 2 1 4 4 C 1.52998 * 109.46963 * 179.97438 * 3 2 1 5 5 C 1.52997 * 112.85163 * 309.67048 * 4 3 2 6 6 O 1.45203 * 109.47341 * 48.79880 * 5 4 3 7 7 C 1.34756 * 116.99845 * 180.02562 * 6 5 4 8 8 O 1.21511 * 120.00283 * 0.02562 * 7 6 5 9 9 C 1.47397 * 119.99989 * 179.97438 * 7 6 5 10 10 C 1.39735 * 120.20024 * 0.02562 * 9 7 6 11 11 C 1.37807 * 119.91117 * 180.27401 * 10 9 7 12 12 C 1.38587 * 120.33206 * 359.48875 * 11 10 9 13 13 C 1.38024 * 120.41321 * 0.51292 * 12 11 10 14 14 C 1.38828 * 120.07868 * 359.74622 * 13 12 11 15 15 O 1.35515 * 120.16719 * 180.02562 * 14 13 12 16 16 C 1.34813 * 116.99495 * 354.39563 * 15 14 13 17 17 H 1.07998 * 120.00301 * 5.06623 * 16 15 14 18 18 C 1.38706 * 119.99428 * 185.06552 * 16 15 14 19 19 N 1.31517 * 120.00175 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99739 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47105 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46725 * 120.00090 * 20 18 16 23 23 H 1.48497 * 109.47022 * 240.00031 * 20 18 16 24 24 C 1.53786 * 113.69054 * 80.93153 * 4 3 2 25 25 C 1.53784 * 87.07770 * 89.12777 * 24 4 3 26 26 C 1.53775 * 113.61615 * 178.47013 * 4 3 2 27 27 H 1.09006 * 109.47197 * 300.00262 * 1 2 3 28 28 H 1.08998 * 109.47325 * 59.99602 * 1 2 3 29 29 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46809 * 60.00179 * 3 2 1 31 31 H 1.09002 * 109.46851 * 299.99833 * 3 2 1 32 32 H 1.09010 * 109.47001 * 288.80392 * 5 4 3 33 33 H 1.08994 * 109.47564 * 168.80592 * 5 4 3 34 34 H 1.07991 * 120.04046 * 359.97438 * 10 9 7 35 35 H 1.08003 * 119.83240 * 179.72325 * 11 10 9 36 36 H 1.07995 * 119.79690 * 180.28009 * 12 11 10 37 37 H 1.08010 * 119.96142 * 179.76758 * 13 12 11 38 38 H 0.96998 * 119.99817 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61723 * 203.67035 * 24 4 3 40 40 H 1.09003 * 113.61507 * 334.58230 * 24 4 3 41 41 H 1.09003 * 113.61827 * 270.88553 * 25 24 4 42 42 H 1.08998 * 113.61630 * 139.98010 * 25 24 4 43 43 H 1.09004 * 113.61365 * 25.34543 * 26 4 3 44 44 H 1.09000 * 113.62012 * 156.16717 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0562 0.2407 1.0863 6 8 3.3125 -1.0056 1.0416 7 6 3.6498 -1.9518 1.9398 8 8 4.5406 -1.7410 2.7389 9 6 2.9373 -3.2420 1.9538 10 6 1.9118 -3.4887 1.0372 11 6 1.2459 -4.6950 1.0593 12 6 1.5949 -5.6704 1.9798 13 6 2.6056 -5.4412 2.8914 14 6 3.2843 -4.2301 2.8879 15 8 4.2773 -4.0033 3.7817 16 6 4.4808 -4.9470 4.7228 17 1 3.9214 -5.8703 4.6915 18 6 5.4087 -4.7319 5.7311 19 7 6.0895 -3.6074 5.7694 20 14 5.6902 -6.0391 7.0356 21 1 4.8056 -7.2020 6.7700 22 1 7.1083 -6.4779 6.9985 23 1 5.3808 -5.4768 8.3747 24 6 4.1345 0.9144 -1.3897 25 6 4.2023 2.4401 -1.5704 26 6 4.2608 2.5401 -0.0369 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.9279 0.7055 2.0640 33 1 5.1137 0.0392 0.9158 34 1 1.6384 -2.7332 0.3157 35 1 0.4505 -4.8825 0.3532 36 1 1.0702 -6.6143 1.9865 37 1 2.8691 -6.2051 3.6080 38 1 6.7381 -3.4569 6.4748 39 1 5.1127 0.4346 -1.3580 40 1 3.4433 0.4239 -2.0751 41 1 3.2980 2.8694 -2.0018 42 1 5.1117 2.7811 -2.0652 43 1 3.6716 3.3621 0.3697 44 1 5.2730 2.5051 0.3660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811058988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:07 Heat of formation + Delta-G solvation = -105.092741 kcal Electronic energy + Delta-G solvation = -27598.117106 eV Core-core repulsion = 23675.776987 eV Total energy + Delta-G solvation = -3922.340118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14144 -39.39217 -38.29312 -36.98236 -36.32276 -35.15744 -32.34834 -30.73531 -29.47949 -28.88677 -27.20545 -25.89714 -25.43046 -25.25082 -23.45278 -22.18141 -21.38856 -19.97215 -18.64009 -17.98633 -17.36850 -16.48395 -16.42431 -16.03648 -15.79779 -15.33384 -15.07934 -14.64788 -14.52730 -14.30142 -14.05846 -13.71300 -13.64100 -13.36878 -13.01957 -12.67932 -12.59737 -12.36093 -12.05865 -11.77661 -11.71064 -11.49542 -11.31271 -11.19115 -11.01075 -10.88814 -10.71946 -10.49881 -10.47633 -10.42877 -10.34811 -9.71775 -9.63174 -9.47633 -9.08526 -8.88326 -8.22513 -7.30021 -6.45471 -4.05265 1.71927 2.38984 3.11769 3.12700 3.18359 3.37501 3.61589 3.78931 3.93183 4.40921 4.61079 4.64977 4.66005 4.80078 5.01129 5.08319 5.20852 5.22290 5.35959 5.39838 5.44392 5.49967 5.60520 5.62617 5.64994 5.69841 5.71884 5.74677 5.80182 5.81829 5.94062 6.01177 6.16024 6.19534 6.24533 6.31599 6.68252 6.75587 6.98554 7.12840 7.22994 7.30539 7.32726 7.44015 7.74764 7.93456 8.91957 8.96402 9.66100 10.68614 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.003785 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.394586 B = 7396.482168 C = 8779.732705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.089 3.911 4 C -0.081 4.081 5 C 0.089 3.911 6 O -0.332 6.332 7 C 0.493 3.507 8 O -0.486 6.486 9 C -0.211 4.211 10 C -0.012 4.012 11 C -0.237 4.237 12 C -0.045 4.045 13 C -0.242 4.242 14 C 0.191 3.809 15 O -0.127 6.127 16 C -0.403 4.403 17 H 0.096 0.904 18 C 0.044 3.956 19 N -0.834 5.834 20 Si 0.942 3.058 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.123 4.123 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.133 0.867 38 H 0.271 0.729 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.450 8.828 -12.565 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.012 3.988 4 C -0.082 4.082 5 C 0.014 3.986 6 O -0.250 6.250 7 C 0.338 3.662 8 O -0.374 6.374 9 C -0.214 4.214 10 C -0.030 4.030 11 C -0.256 4.256 12 C -0.064 4.064 13 C -0.261 4.261 14 C 0.132 3.868 15 O -0.026 6.026 16 C -0.478 4.478 17 H 0.113 0.887 18 C -0.163 4.163 19 N -0.465 5.465 20 Si 0.766 3.234 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.162 4.162 25 C -0.180 4.180 26 C -0.160 4.160 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.665 9.072 -12.112 16.963 hybrid contribution -0.021 -0.412 0.807 0.906 sum -7.686 8.660 -11.306 16.183 Atomic orbital electron populations 1.22728 0.82179 1.02765 0.99077 1.88182 1.18166 1.25820 1.95043 1.22112 0.91287 0.85804 0.99572 1.21943 0.94272 0.95734 0.96202 1.22684 0.95022 0.82869 0.98051 1.86723 1.59205 1.24016 1.55022 1.21156 0.82021 0.84290 0.78694 1.90985 1.29212 1.79456 1.37712 1.18090 1.05633 0.92448 1.05209 1.21056 0.91382 0.96070 0.94496 1.20537 1.05268 0.95641 1.04192 1.20944 0.94613 0.97666 0.93152 1.21089 1.01891 0.98533 1.04629 1.19282 0.86968 0.91513 0.89073 1.84160 1.40731 1.43439 1.34230 1.21563 1.24036 0.97622 1.04613 0.88704 1.25398 0.95505 0.97700 0.97739 1.70134 1.21628 1.23041 1.31733 0.85648 0.78725 0.79443 0.79603 1.18923 1.20008 1.20005 1.22964 1.01459 0.95830 0.95902 1.22865 1.02064 0.97132 0.95976 1.22920 1.01034 0.95212 0.96834 0.94576 0.94881 0.89529 0.93467 0.93430 0.91990 0.91711 0.85226 0.87194 0.87160 0.84986 0.91901 0.89734 0.90781 0.90236 0.91198 0.90984 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.35 -4.92 8.20 -58.66 -0.48 -5.40 16 3 C 0.09 1.04 5.27 37.16 0.20 1.24 16 4 C -0.08 -0.99 1.07 -153.70 -0.17 -1.16 16 5 C 0.09 1.46 4.94 37.16 0.18 1.64 16 6 O -0.33 -6.48 6.96 -48.45 -0.34 -6.82 16 7 C 0.49 11.74 7.89 34.46 0.27 12.01 16 8 O -0.49 -13.64 14.96 -26.59 -0.40 -14.04 16 9 C -0.21 -4.90 5.89 -104.82 -0.62 -5.52 16 10 C -0.01 -0.22 9.61 -39.18 -0.38 -0.60 16 11 C -0.24 -4.10 10.02 -39.61 -0.40 -4.50 16 12 C -0.05 -0.82 10.03 -39.53 -0.40 -1.22 16 13 C -0.24 -5.31 9.16 -39.44 -0.36 -5.67 16 14 C 0.19 4.87 6.66 -38.58 -0.26 4.61 16 15 O -0.13 -3.81 7.84 -21.04 -0.16 -3.97 16 16 C -0.40 -11.48 9.49 30.91 0.29 -11.19 16 17 H 0.10 2.45 5.21 -52.49 -0.27 2.18 16 18 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 19 N -0.83 -25.23 13.67 55.48 0.76 -24.47 16 20 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.12 -1.36 7.21 -25.91 -0.19 -1.55 16 25 C -0.14 -1.22 7.73 -25.92 -0.20 -1.42 16 26 C -0.12 -1.16 7.23 -25.92 -0.19 -1.35 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.46 7.34 -51.93 -0.38 0.08 16 32 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 34 H 0.13 2.21 7.61 -52.49 -0.40 1.81 16 35 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 40 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.08 0.60 7.64 -51.93 -0.40 0.20 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.17 16 44 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -34.49 368.11 -7.63 -42.12 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.35 Total: 3.55 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.18 Total: -12.10 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.76 Total: -24.47 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.38 Total: -30.23 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.49 -7.63 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811058988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.972 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds