Wall clock time and date at job start Tue Mar 31 2020 12:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00484 * 2 1 4 4 C 1.38756 * 120.05143 * 5.66631 * 3 2 1 5 5 C 1.38125 * 119.94160 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05765 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.10784 * 359.97438 * 6 5 4 8 8 C 1.38158 * 120.05596 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.02448 * 179.97438 * 8 7 6 10 10 C 1.50705 * 115.54589 * 95.12852 * 9 8 7 11 11 O 1.20825 * 120.00119 * 113.75415 * 10 9 8 12 12 O 1.34230 * 120.00012 * 293.74992 * 10 9 8 13 13 C 1.45194 * 117.00449 * 178.73326 * 12 10 9 14 14 C 1.52997 * 109.47249 * 183.81481 * 13 12 10 15 15 O 1.42901 * 109.47296 * 65.22255 * 14 13 12 16 16 C 1.42904 * 114.00004 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47251 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99423 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00169 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00155 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00035 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47017 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46971 * 119.99827 * 21 19 17 24 24 H 1.48503 * 109.47123 * 239.99686 * 21 19 17 25 25 C 1.52994 * 117.50390 * 309.41921 * 9 8 7 26 26 C 1.52994 * 117.50352 * 240.79340 * 9 8 7 27 27 H 1.09000 * 109.46711 * 299.71379 * 1 2 3 28 28 H 1.09008 * 109.46869 * 59.70964 * 1 2 3 29 29 H 1.08994 * 109.47535 * 179.71719 * 1 2 3 30 30 H 1.07997 * 120.02838 * 0.25064 * 4 3 2 31 31 H 1.07990 * 119.97148 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.94486 * 180.02562 * 6 5 4 33 33 H 1.07995 * 119.96784 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.46842 * 303.81214 * 13 12 10 35 35 H 1.09002 * 109.47321 * 63.80925 * 13 12 10 36 36 H 1.09007 * 109.46970 * 185.22524 * 14 13 12 37 37 H 1.08994 * 109.47166 * 305.21899 * 14 13 12 38 38 H 1.09006 * 109.46759 * 299.99929 * 16 15 14 39 39 H 1.08997 * 109.47020 * 59.99642 * 16 15 14 40 40 H 0.96998 * 119.99753 * 179.97438 * 20 19 17 41 41 H 1.09002 * 117.49666 * 359.97438 * 25 9 8 42 42 H 1.08997 * 117.50272 * 145.01922 * 25 9 8 43 43 H 1.09003 * 117.50334 * 214.98878 * 26 9 8 44 44 H 1.09005 * 117.49607 * 359.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2967 2.3726 0.1186 5 6 1.9263 3.6020 0.1189 6 6 3.3021 3.6757 0.0005 7 6 4.0509 2.5196 -0.1177 8 6 3.4260 1.2874 -0.1175 9 6 4.2429 0.0276 -0.2470 10 6 4.6138 -0.6429 1.0507 11 8 4.1614 -1.7304 1.3198 12 8 5.4468 -0.0318 1.9078 13 6 5.7377 -0.7235 3.1508 14 6 6.6206 0.1618 4.0325 15 8 5.8919 1.3295 4.4165 16 6 6.6302 2.2288 5.2462 17 6 5.7695 3.4173 5.5890 18 1 4.7598 3.4799 5.2108 19 6 6.2713 4.4253 6.3847 20 7 7.5010 4.3493 6.8449 21 14 5.2047 5.8990 6.8091 22 1 3.8722 5.7455 6.1717 23 1 5.0422 5.9844 8.2827 24 1 5.8519 7.1387 6.3097 25 6 5.2529 -0.0448 -1.3939 26 6 3.9674 -0.8722 -1.4534 27 1 -0.3633 0.5094 0.8926 28 1 -0.3633 0.5184 -0.8874 29 1 -0.3634 -1.0276 -0.0051 30 1 0.2226 2.3154 0.2151 31 1 1.3435 4.5065 0.2107 32 1 3.7925 4.6379 0.0014 33 1 5.1253 2.5797 -0.2096 34 1 4.8055 -0.9410 3.6722 35 1 6.2591 -1.6559 2.9343 36 1 6.9154 -0.3921 4.9239 37 1 7.5109 0.4556 3.4765 38 1 6.9255 1.7180 6.1628 39 1 7.5203 2.5654 4.7149 40 1 7.8541 5.0587 7.4043 41 1 5.3263 0.8187 -2.0551 42 1 6.1860 -0.5772 -1.2100 43 1 4.0547 -1.9490 -1.3085 44 1 3.1949 -0.5532 -2.1532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815201622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:26 Heat of formation + Delta-G solvation = -136.354837 kcal Electronic energy + Delta-G solvation = -27117.117834 eV Core-core repulsion = 23193.422089 eV Total energy + Delta-G solvation = -3923.695745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99037 -40.97640 -38.98659 -38.51302 -37.79068 -37.08404 -34.95534 -31.88952 -31.69159 -31.02105 -29.09426 -28.14720 -26.42210 -24.58322 -24.10648 -23.66377 -23.08447 -22.61288 -21.02524 -19.32848 -18.71502 -18.51016 -18.02055 -17.70775 -17.13213 -16.95113 -16.64478 -16.56388 -16.33656 -16.16843 -15.56125 -15.36615 -15.16235 -14.64493 -14.59290 -14.14556 -13.90616 -13.73006 -13.59398 -13.22747 -12.93191 -12.90446 -12.74871 -12.63011 -12.53956 -12.44063 -12.21743 -12.02519 -11.98472 -11.78310 -11.59197 -11.53585 -11.28241 -11.23341 -10.91173 -10.28980 -9.85678 -9.14619 -8.33033 -6.44998 0.24525 0.46607 1.07303 1.39105 1.40447 1.55192 1.58863 2.33854 2.37845 2.60906 2.78535 3.00838 3.03590 3.43187 3.58093 3.80028 3.86285 3.89771 4.02420 4.05434 4.09881 4.28137 4.35878 4.37931 4.41041 4.46610 4.52502 4.58838 4.65804 4.69675 4.71900 4.73708 4.83417 4.89557 5.02164 5.13278 5.16142 5.31996 5.35524 5.45751 5.53473 5.58870 5.83423 5.94231 6.44230 6.48508 6.66464 6.78683 7.26561 8.79493 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.003890 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.982239 B = 7195.864908 C = 8556.556950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.124 3.876 4 C -0.216 4.216 5 C -0.078 4.078 6 C -0.166 4.166 7 C -0.067 4.067 8 C -0.106 4.106 9 C -0.108 4.108 10 C 0.500 3.500 11 O -0.530 6.530 12 O -0.351 6.351 13 C 0.075 3.925 14 C 0.056 3.944 15 O -0.410 6.410 16 C 0.209 3.791 17 C -0.548 4.548 18 H 0.056 0.944 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.980 3.020 22 H -0.267 1.267 23 H -0.270 1.270 24 H -0.268 1.268 25 C -0.130 4.130 26 C -0.114 4.114 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.059 0.941 38 H -0.008 1.008 39 H -0.009 1.009 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 -6.782 -19.716 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.240 6.240 3 C 0.079 3.921 4 C -0.235 4.235 5 C -0.095 4.095 6 C -0.184 4.184 7 C -0.085 4.085 8 C -0.107 4.107 9 C -0.109 4.109 10 C 0.344 3.656 11 O -0.419 6.419 12 O -0.267 6.267 13 C 0.002 3.998 14 C -0.021 4.021 15 O -0.331 6.331 16 C 0.134 3.866 17 C -0.585 4.585 18 H 0.074 0.926 19 C -0.188 4.188 20 N -0.568 5.568 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.166 4.166 26 C -0.151 4.151 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.480 -7.195 -19.544 23.315 hybrid contribution -0.136 0.492 1.047 1.165 sum -10.616 -6.703 -18.498 22.356 Atomic orbital electron populations 1.23325 0.76814 1.05289 1.02205 1.86149 1.23087 1.26454 1.88356 1.19073 0.91774 0.85267 0.96018 1.21492 1.01281 0.91896 1.08806 1.21353 0.94821 0.97942 0.95432 1.21374 0.94577 0.98999 1.03449 1.21082 1.00714 0.90892 0.95770 1.18135 0.90012 0.92764 1.09745 1.19266 1.07075 0.98358 0.86236 1.22968 0.74502 0.83024 0.85065 1.90588 1.52310 1.22445 1.76596 1.86597 1.59928 1.50826 1.29348 1.23227 1.00280 0.95014 0.81301 1.22626 0.94513 0.87712 0.97244 1.87883 1.42028 1.32899 1.70259 1.19877 0.91438 0.87631 0.87665 1.21357 1.00306 1.04892 1.31971 0.92582 1.25898 0.96716 1.01431 0.94785 1.70062 1.16500 1.35215 1.34977 0.85186 0.78501 0.77733 0.78303 1.19115 1.19552 1.19299 1.23364 0.93928 1.03542 0.95814 1.23074 0.99680 0.97741 0.94589 0.92518 0.90802 0.86831 0.83152 0.83140 0.84062 0.84497 0.91823 0.87077 0.89927 0.92266 0.99067 0.99155 0.91958 0.85259 0.87019 0.87922 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.83 113.37 1.11 1.41 16 2 O -0.33 -8.59 9.48 -92.43 -0.88 -9.47 16 3 C 0.12 3.41 6.60 22.51 0.15 3.56 16 4 C -0.22 -5.03 9.05 22.37 0.20 -4.83 16 5 C -0.08 -1.75 10.04 22.26 0.22 -1.53 16 6 C -0.17 -4.13 10.04 22.29 0.22 -3.91 16 7 C -0.07 -1.82 9.45 22.25 0.21 -1.61 16 8 C -0.11 -3.03 5.00 -19.77 -0.10 -3.13 16 9 C -0.11 -2.99 1.72 -53.67 -0.09 -3.08 16 10 C 0.50 17.33 7.19 71.24 0.51 17.84 16 11 O -0.53 -20.06 16.43 21.97 0.36 -19.70 16 12 O -0.35 -13.09 10.19 -48.83 -0.50 -13.59 16 13 C 0.08 2.59 5.87 71.98 0.42 3.01 16 14 C 0.06 2.14 6.33 71.98 0.46 2.60 16 15 O -0.41 -21.09 10.30 -145.78 -1.50 -22.59 16 16 C 0.21 11.94 5.69 71.24 0.41 12.34 16 17 C -0.55 -33.31 9.43 25.60 0.24 -33.07 16 18 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 19 C 0.01 0.60 5.46 84.65 0.46 1.07 16 20 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 21 Si 0.98 44.63 29.54 68.60 2.03 46.66 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 C -0.13 -2.51 9.68 30.59 0.30 -2.21 16 26 C -0.11 -2.41 9.19 30.59 0.28 -2.12 16 27 H 0.06 0.90 7.43 -2.39 -0.02 0.88 16 28 H 0.07 0.90 7.89 -2.38 -0.02 0.88 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.15 2.64 6.31 -2.91 -0.02 2.62 16 31 H 0.15 2.51 8.06 -2.92 -0.02 2.48 16 32 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.14 3.47 8.05 -2.91 -0.02 3.45 16 34 H 0.06 2.33 8.08 -2.38 -0.02 2.31 16 35 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.13 1.98 8.12 -2.39 -0.02 1.96 16 42 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.10 2.21 8.01 -2.39 -0.02 2.19 16 44 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -76.87 382.40 5.79 -71.07 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.99 Total: 16.74 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.01 Total: -13.66 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.28 Total: -55.46 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: -2.51 Total: -65.36 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.87 5.79 -71.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815201622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.281 kcal (2) G-P(sol) polarization free energy of solvation -76.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds