Wall clock time and date at job start Tue Mar 31 2020 12:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00084 * 2 1 4 4 H 1.08992 * 109.47158 * 30.00019 * 3 2 1 5 5 C 1.53003 * 109.47307 * 270.00017 * 3 2 1 6 6 C 1.53003 * 109.47171 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46890 * 60.00097 * 6 5 3 8 8 C 1.53000 * 109.47400 * 299.99668 * 7 6 5 9 9 H 1.08998 * 109.46714 * 300.00705 * 8 7 6 10 10 C 1.50700 * 109.47099 * 180.02562 * 8 7 6 11 11 O 1.20827 * 120.00041 * 239.99895 * 10 8 7 12 12 O 1.34267 * 119.99913 * 60.00676 * 10 8 7 13 13 C 1.35918 * 116.99837 * 185.33833 * 12 10 8 14 14 C 1.38827 * 120.02013 * 246.76252 * 13 12 10 15 15 C 1.38190 * 120.08228 * 180.02562 * 14 13 12 16 16 C 1.38152 * 120.12076 * 359.97438 * 15 14 13 17 17 C 1.38894 * 120.04550 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.04398 * 179.97438 * 17 16 15 19 19 C 1.34828 * 116.99894 * 185.93789 * 18 17 16 20 20 H 1.07999 * 120.00137 * 354.89942 * 19 18 17 21 21 C 1.38656 * 119.99770 * 174.89468 * 19 18 17 22 22 N 1.31557 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47138 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47193 * 120.00103 * 23 21 19 26 26 H 1.48505 * 109.47045 * 240.00196 * 23 21 19 27 27 C 1.38576 * 120.02062 * 66.78855 * 13 12 10 28 28 C 1.53003 * 109.46997 * 150.00195 * 3 2 1 29 29 H 1.09003 * 109.47723 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47085 * 299.99971 * 1 2 3 31 31 H 1.09005 * 109.47298 * 60.00035 * 1 2 3 32 32 H 1.09004 * 109.46870 * 59.99982 * 5 3 2 33 33 H 1.09000 * 109.47334 * 300.00165 * 5 3 2 34 34 H 1.08992 * 109.47097 * 299.99881 * 6 5 3 35 35 H 1.09002 * 109.46595 * 180.02562 * 6 5 3 36 36 H 1.09007 * 109.46563 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47205 * 60.00244 * 7 6 5 38 38 H 1.07996 * 119.96210 * 0.02562 * 14 13 12 39 39 H 1.07993 * 119.93998 * 179.97438 * 15 14 13 40 40 H 1.08006 * 119.97699 * 179.70322 * 16 15 14 41 41 H 0.97002 * 120.00548 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.06162 * 359.97438 * 27 13 12 43 43 H 1.09000 * 109.47089 * 60.00175 * 28 3 2 44 44 H 1.08996 * 109.47038 * 300.00228 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 2.8406 3.1688 -1.4425 7 6 4.1893 3.1259 -0.7214 8 6 3.9819 2.6600 0.7211 9 1 3.3170 3.3542 1.2350 10 6 5.3103 2.6184 1.4314 11 8 5.7175 1.5776 1.8906 12 8 6.0414 3.7379 1.5542 13 6 7.2771 3.6106 2.1056 14 6 7.5487 4.1827 3.3410 15 6 8.8048 4.0545 3.9026 16 6 9.7938 3.3563 3.2371 17 6 9.5274 2.7809 2.0013 18 8 10.4995 2.0952 1.3471 19 6 10.2140 1.6680 0.1006 20 1 9.2212 1.8032 -0.3025 21 6 11.1951 1.0551 -0.6638 22 7 12.4043 0.8900 -0.1727 23 14 10.7998 0.4638 -2.3911 24 1 9.3803 0.7664 -2.7052 25 1 11.6805 1.1571 -3.3653 26 1 11.0246 -1.0017 -2.4762 27 6 8.2668 2.9100 1.4348 28 6 3.3589 1.2631 0.7212 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2568 1.8014 -1.9563 33 1 2.8829 1.0775 -1.9564 34 1 2.1757 3.8630 -0.9286 35 1 2.9879 3.5009 -2.4702 36 1 4.6333 4.1215 -0.7218 37 1 4.8542 2.4318 -1.2354 38 1 6.7774 4.7287 3.8638 39 1 9.0137 4.5009 4.8636 40 1 10.7761 3.2616 3.6760 41 1 13.0908 0.4616 -0.7075 42 1 8.0573 2.4642 0.4738 43 1 4.0241 0.5692 0.2073 44 1 3.2111 0.9312 1.7488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:12 Heat of formation + Delta-G solvation = -158.357322 kcal Electronic energy + Delta-G solvation = -26976.003352 eV Core-core repulsion = 23051.353508 eV Total energy + Delta-G solvation = -3924.649844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54514 -40.78670 -40.07871 -38.70142 -37.42822 -37.26580 -34.37408 -32.43106 -31.44619 -31.07311 -30.57784 -27.52910 -27.32803 -25.97104 -23.78936 -23.38561 -23.27207 -21.86929 -20.94764 -20.14958 -19.55473 -18.65996 -17.85560 -17.52619 -17.00329 -16.89006 -16.47134 -16.07120 -16.05587 -16.04482 -15.65941 -15.50939 -15.05687 -14.88977 -14.63013 -14.46341 -14.21771 -13.76975 -13.57198 -13.40418 -13.26619 -13.00064 -12.79607 -12.66684 -12.60819 -12.46431 -12.20230 -12.14768 -11.96240 -11.81375 -11.65822 -11.57261 -11.53627 -11.34189 -10.88939 -10.45063 -9.80908 -9.17974 -8.56213 -6.25540 0.10869 0.52465 1.00194 1.27746 1.35867 1.45844 1.62805 2.10197 2.68602 2.78713 3.02474 3.29966 3.41487 3.57059 3.78073 3.93308 3.95853 4.03122 4.09216 4.17333 4.23420 4.27088 4.29687 4.36198 4.50370 4.51222 4.55882 4.59914 4.76958 4.84850 4.90352 4.91876 4.98585 4.99473 5.03050 5.09344 5.18105 5.21947 5.32099 5.38937 5.41917 5.49048 5.52314 5.91186 5.97467 6.30075 6.68490 6.87607 7.62976 8.66422 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.011375 B = 0.003709 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.018784 B = 7547.187608 C = 9201.890153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.097 3.903 4 H 0.092 0.908 5 C -0.143 4.143 6 C -0.103 4.103 7 C -0.119 4.119 8 C -0.058 4.058 9 H 0.151 0.849 10 C 0.454 3.546 11 O -0.524 6.524 12 O -0.287 6.287 13 C 0.114 3.886 14 C -0.190 4.190 15 C -0.046 4.046 16 C -0.197 4.197 17 C 0.127 3.873 18 O -0.221 6.221 19 C -0.418 4.418 20 H 0.089 0.911 21 C -0.015 4.015 22 N -0.912 5.912 23 Si 1.014 2.986 24 H -0.260 1.260 25 H -0.258 1.258 26 H -0.265 1.265 27 C -0.252 4.252 28 C -0.103 4.103 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.131 0.869 41 H 0.276 0.724 42 H 0.107 0.893 43 H 0.050 0.950 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.569 7.269 -0.605 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.039 3.961 4 H 0.110 0.890 5 C -0.181 4.181 6 C -0.140 4.140 7 C -0.156 4.156 8 C -0.076 4.076 9 H 0.169 0.831 10 C 0.299 3.701 11 O -0.410 6.410 12 O -0.202 6.202 13 C 0.072 3.928 14 C -0.209 4.209 15 C -0.064 4.064 16 C -0.216 4.216 17 C 0.076 3.924 18 O -0.127 6.127 19 C -0.494 4.494 20 H 0.107 0.893 21 C -0.214 4.214 22 N -0.550 5.550 23 Si 0.833 3.167 24 H -0.183 1.183 25 H -0.183 1.183 26 H -0.189 1.189 27 C -0.272 4.272 28 C -0.141 4.141 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.177 0.823 39 H 0.195 0.805 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.069 0.931 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.903 6.626 -0.442 25.773 hybrid contribution 0.543 -0.736 -0.730 1.171 sum -24.359 5.890 -1.173 25.089 Atomic orbital electron populations 1.22987 0.79326 1.03664 1.01179 1.87907 1.21642 1.28572 1.95231 1.22089 0.93188 0.84820 0.95982 0.89037 1.22096 1.02206 0.97442 0.96359 1.21453 0.94338 0.96473 1.01779 1.21667 1.00008 1.02498 0.91456 1.21114 0.88376 1.00489 0.97668 0.83144 1.25030 0.87700 0.80709 0.76669 1.90729 1.71969 1.32625 1.45725 1.84528 1.25518 1.37048 1.73083 1.18468 0.81939 0.98995 0.93352 1.21057 0.99712 1.06770 0.93344 1.21092 0.90507 0.95043 0.99743 1.20715 1.02100 1.04287 0.94491 1.19721 0.88057 0.91226 0.93391 1.83952 1.37099 1.62848 1.28801 1.21704 0.98862 1.40019 0.88775 0.89345 1.26525 0.94117 0.96379 1.04364 1.70157 1.03462 1.41874 1.39459 0.84614 0.79121 0.78527 0.74454 1.18332 1.18266 1.18938 1.21151 0.94645 1.08540 1.02891 1.21423 0.96463 0.94477 1.01721 0.89163 0.92777 0.92582 0.89564 0.92877 0.88669 0.89622 0.89304 0.93302 0.82265 0.80547 0.85135 0.91474 0.87543 0.93109 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.41 -8.55 10.35 -148.98 -1.54 -10.09 16 3 C 0.10 1.64 2.61 30.60 0.08 1.72 16 4 H 0.09 1.04 7.79 -2.39 -0.02 1.02 16 5 C -0.14 -2.11 5.54 30.60 0.17 -1.94 16 6 C -0.10 -1.26 5.92 30.59 0.18 -1.08 16 7 C -0.12 -2.28 5.13 30.59 0.16 -2.12 16 8 C -0.06 -1.24 2.63 -11.56 -0.03 -1.27 16 9 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 10 C 0.45 15.07 7.02 71.24 0.50 15.57 16 11 O -0.52 -22.28 15.30 21.96 0.34 -21.94 16 12 O -0.29 -9.90 9.95 4.59 0.05 -9.86 16 13 C 0.11 4.60 5.34 22.49 0.12 4.72 16 14 C -0.19 -6.37 9.99 22.40 0.22 -6.15 16 15 C -0.05 -1.52 10.03 22.24 0.22 -1.29 16 16 C -0.20 -8.41 9.99 22.41 0.22 -8.18 16 17 C 0.13 6.69 6.64 22.56 0.15 6.84 16 18 O -0.22 -13.80 9.76 -22.77 -0.22 -14.03 16 19 C -0.42 -25.67 9.49 67.92 0.64 -25.03 16 20 H 0.09 5.22 5.20 -2.91 -0.02 5.21 16 21 C -0.02 -0.90 5.49 84.83 0.47 -0.43 16 22 N -0.91 -56.81 13.67 21.61 0.30 -56.52 16 23 Si 1.01 44.70 29.55 68.60 2.03 46.72 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 27 C -0.25 -12.42 8.30 22.49 0.19 -12.23 16 28 C -0.10 -2.41 4.14 30.58 0.13 -2.28 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.06 0.51 7.87 -2.38 -0.02 0.49 16 32 H 0.09 0.95 7.87 -2.39 -0.02 0.93 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.62 8.11 -2.38 -0.02 1.61 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.13 5.28 8.06 -2.91 -0.02 5.25 16 41 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.11 5.61 5.64 -2.91 -0.02 5.60 16 43 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 44 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -81.19 367.09 6.59 -74.60 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.00 Total: 22.74 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 4.65 Total: -31.63 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -1.38 Total: -55.91 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -81.19 6.59 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.759 kcal (2) G-P(sol) polarization free energy of solvation -81.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds