Wall clock time and date at job start Tue Mar 31 2020 12:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00298 * 2 1 4 4 C 1.50693 * 109.47033 * 55.43610 * 3 2 1 5 5 O 1.20834 * 119.99690 * 218.39199 * 4 3 2 6 6 O 1.34263 * 120.00136 * 38.39196 * 4 3 2 7 7 C 1.35924 * 116.99714 * 185.16989 * 6 4 3 8 8 C 1.38830 * 120.01656 * 246.08738 * 7 6 4 9 9 C 1.38191 * 120.07891 * 180.02562 * 8 7 6 10 10 C 1.38154 * 120.12520 * 0.25419 * 9 8 7 11 11 C 1.38897 * 120.03840 * 359.49169 * 10 9 8 12 12 O 1.35755 * 120.04122 * 180.25131 * 11 10 9 13 13 C 1.34827 * 116.99957 * 186.39767 * 12 11 10 14 14 H 1.07994 * 120.00104 * 5.68289 * 13 12 11 15 15 C 1.38653 * 119.99693 * 185.67727 * 13 12 11 16 16 N 1.31554 * 120.00301 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99850 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47354 * 90.00262 * 17 15 13 19 19 H 1.48503 * 109.47241 * 210.00412 * 17 15 13 20 20 H 1.48508 * 109.47157 * 330.00364 * 17 15 13 21 21 C 1.38575 * 120.02581 * 66.11236 * 7 6 4 22 22 C 1.53002 * 109.46956 * 175.43859 * 3 2 1 23 23 C 1.52998 * 109.47208 * 59.99513 * 22 3 2 24 24 C 1.53007 * 109.47175 * 60.00197 * 23 22 3 25 25 C 1.53002 * 109.46892 * 299.99997 * 24 23 22 26 26 C 1.52998 * 109.47208 * 60.00023 * 25 24 23 27 27 H 1.09003 * 109.46759 * 304.98913 * 1 2 3 28 28 H 1.09001 * 109.46838 * 64.97878 * 1 2 3 29 29 H 1.08990 * 109.47632 * 184.98856 * 1 2 3 30 30 H 1.07999 * 119.96222 * 0.04389 * 8 7 6 31 31 H 1.08000 * 119.93750 * 179.97438 * 9 8 7 32 32 H 1.08001 * 119.98116 * 179.73995 * 10 9 8 33 33 H 0.97000 * 120.00127 * 180.02562 * 16 15 13 34 34 H 1.07999 * 120.05596 * 359.95360 * 21 7 6 35 35 H 1.09000 * 109.46805 * 179.97438 * 22 3 2 36 36 H 1.08996 * 109.46831 * 299.99918 * 22 3 2 37 37 H 1.08992 * 109.47509 * 300.00290 * 23 22 3 38 38 H 1.09000 * 109.47004 * 179.97438 * 23 22 3 39 39 H 1.08992 * 109.47119 * 179.97438 * 24 23 22 40 40 H 1.09006 * 109.46733 * 59.99716 * 24 23 22 41 41 H 1.09000 * 109.46805 * 299.99562 * 25 24 23 42 42 H 1.08996 * 109.46831 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.47004 * 180.02562 * 26 25 24 44 44 H 1.08992 * 109.47509 * 59.99709 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4783 2.0922 1.1700 5 8 1.2324 3.2686 1.0452 6 8 1.2776 1.4859 2.3510 7 6 0.6957 2.2244 3.3326 8 6 1.4145 2.5513 4.4745 9 6 0.8240 3.3016 5.4735 10 6 -0.4847 3.7243 5.3417 11 6 -1.2068 3.4047 4.1990 12 8 -2.4911 3.8244 4.0671 13 6 -3.1767 3.3703 2.9987 14 1 -2.7333 2.6330 2.3460 15 6 -4.4514 3.8498 2.7382 16 7 -4.9915 4.7482 3.5331 17 14 -5.4017 3.2202 1.2583 18 1 -6.1989 2.0306 1.6515 19 1 -6.3117 4.2849 0.7649 20 1 -4.4499 2.8444 0.1821 21 6 -0.6154 2.6512 3.1945 22 6 3.5314 1.1864 0.1147 23 6 4.0715 0.3875 -1.0731 24 6 3.7130 1.1054 -2.3759 25 6 2.1919 1.2244 -2.4906 26 6 1.6518 2.0233 -1.3028 27 1 -0.3633 0.5893 0.8420 28 1 -0.3633 0.4347 -0.9312 29 1 -0.3634 -1.0236 0.0894 30 1 2.4365 2.2190 4.5821 31 1 1.3852 3.5542 6.3611 32 1 -0.9452 4.3070 6.1257 33 1 -5.8833 5.0834 3.3509 34 1 -1.1760 2.3981 2.3067 35 1 3.9748 2.1821 0.1143 36 1 3.7868 0.6749 1.0427 37 1 3.6281 -0.6082 -1.0731 38 1 5.1551 0.3031 -0.9916 39 1 4.0981 0.5365 -3.2220 40 1 4.1564 2.1011 -2.3759 41 1 1.7485 0.2287 -2.4906 42 1 1.9365 1.7362 -3.4184 43 1 0.5682 2.1077 -1.3843 44 1 2.0952 3.0190 -1.3028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:17 Heat of formation + Delta-G solvation = -131.546373 kcal Electronic energy + Delta-G solvation = -27998.475318 eV Core-core repulsion = 24074.988084 eV Total energy + Delta-G solvation = -3923.487234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43354 -39.61807 -38.57113 -36.99838 -36.20293 -35.70048 -32.34998 -31.32102 -30.68095 -29.64043 -28.94852 -26.69419 -25.57218 -24.73543 -22.97985 -22.27567 -21.63192 -20.55069 -19.74794 -18.33369 -18.10244 -17.43944 -16.68944 -16.06987 -15.81277 -15.55228 -15.16907 -14.93784 -14.61968 -14.29489 -14.13254 -13.78664 -13.73445 -13.64364 -13.26895 -12.91424 -12.77779 -12.68878 -12.50237 -12.40739 -11.92815 -11.63194 -11.60280 -11.32647 -11.29880 -11.07685 -11.06019 -10.86185 -10.80684 -10.63351 -10.53635 -10.40100 -10.11798 -9.75572 -9.52163 -8.90984 -8.17423 -7.38737 -6.52274 -4.11808 1.70322 2.17167 2.21052 2.88750 3.07817 3.08841 3.13385 3.52594 3.90200 4.32024 4.40227 4.43552 4.63009 4.86891 4.89614 4.94695 5.03073 5.11865 5.15383 5.25704 5.27622 5.36580 5.37333 5.51996 5.56565 5.61630 5.72029 5.75638 5.80259 5.84006 5.93124 5.95317 5.97399 6.01864 6.11440 6.21384 6.24626 6.52580 6.78344 6.87800 6.96099 7.04894 7.10002 7.27541 7.54848 7.90724 8.08620 8.92569 9.59189 10.65247 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.004381 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.571413 B = 6389.680364 C = 7988.273578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.353 6.353 3 C 0.140 3.860 4 C 0.431 3.569 5 O -0.474 6.474 6 O -0.285 6.285 7 C 0.118 3.882 8 C -0.210 4.210 9 C -0.063 4.063 10 C -0.188 4.188 11 C 0.165 3.835 12 O -0.170 6.170 13 C -0.393 4.393 14 H 0.089 0.911 15 C 0.043 3.957 16 N -0.858 5.858 17 Si 0.939 3.061 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.268 1.268 21 C -0.236 4.236 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.113 4.113 26 C -0.135 4.135 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.272 0.728 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.199 -8.808 -9.488 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.272 6.272 3 C 0.099 3.901 4 C 0.272 3.728 5 O -0.357 6.357 6 O -0.199 6.199 7 C 0.078 3.922 8 C -0.230 4.230 9 C -0.082 4.082 10 C -0.208 4.208 11 C 0.111 3.889 12 O -0.073 6.073 13 C -0.469 4.469 14 H 0.106 0.894 15 C -0.162 4.162 16 N -0.492 5.492 17 Si 0.764 3.236 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.192 1.192 21 C -0.256 4.256 22 C -0.143 4.143 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.150 4.150 26 C -0.173 4.173 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.845 -8.304 -9.361 19.415 hybrid contribution -0.871 0.053 -0.654 1.091 sum 13.973 -8.251 -10.015 19.069 Atomic orbital electron populations 1.22985 0.80326 1.03802 1.00800 1.87983 1.20253 1.24487 1.94452 1.21497 0.95785 0.83440 0.89401 1.24925 0.75784 0.87718 0.84348 1.90738 1.45272 1.16751 1.82983 1.84629 1.71611 1.43070 1.20627 1.18336 0.91057 0.95273 0.87581 1.20436 0.99961 1.06464 0.96113 1.20497 0.93949 0.96112 0.97596 1.20329 0.94897 1.07632 0.97908 1.19121 0.85735 0.91600 0.92443 1.84017 1.17348 1.61765 1.44141 1.21266 0.97562 1.23376 1.04673 0.89407 1.25279 0.96200 0.95963 0.98803 1.70027 1.15870 1.27021 1.36325 0.85738 0.79372 0.78619 0.79896 1.19657 1.20024 1.19245 1.21156 0.95036 1.07002 1.02382 1.21587 0.89542 1.02301 1.00891 1.21452 1.00451 0.99846 0.93232 1.21584 0.95880 1.00818 0.97660 1.21459 0.95867 1.00809 0.96885 1.22033 1.02579 1.00146 0.92547 0.93277 0.93354 0.88536 0.86648 0.85905 0.85835 0.91849 0.85410 0.89872 0.89882 0.90547 0.91385 0.91631 0.91889 0.91011 0.91369 0.90734 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.25 101.05 1.04 1.26 16 2 O -0.35 -4.70 8.85 -47.85 -0.42 -5.12 16 3 C 0.14 1.87 0.67 -91.77 -0.06 1.81 16 4 C 0.43 7.58 5.17 36.00 0.19 7.77 16 5 O -0.47 -9.80 15.34 -18.75 -0.29 -10.09 16 6 O -0.28 -5.36 9.09 -28.49 -0.26 -5.61 16 7 C 0.12 2.47 5.36 -39.24 -0.21 2.26 16 8 C -0.21 -3.95 9.99 -39.38 -0.39 -4.34 16 9 C -0.06 -1.15 10.03 -39.63 -0.40 -1.55 16 10 C -0.19 -4.02 9.99 -39.37 -0.39 -4.41 16 11 C 0.17 4.13 6.64 -39.13 -0.26 3.87 16 12 O -0.17 -4.91 9.76 0.04 0.00 -4.91 16 13 C -0.39 -11.15 9.43 30.89 0.29 -10.86 16 14 H 0.09 2.35 5.31 -52.49 -0.28 2.07 16 15 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 16 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 17 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.24 -5.55 8.22 -39.25 -0.32 -5.87 16 22 C -0.11 -1.14 4.93 -26.73 -0.13 -1.28 16 23 C -0.11 -0.96 5.78 -26.73 -0.15 -1.12 16 24 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 25 C -0.11 -1.04 5.78 -26.73 -0.15 -1.19 16 26 C -0.14 -1.63 3.97 -26.73 -0.11 -1.74 16 27 H 0.05 0.76 6.34 -51.93 -0.33 0.44 16 28 H 0.05 0.56 6.77 -51.93 -0.35 0.21 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.13 3.09 5.72 -52.49 -0.30 2.79 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.70 7.68 -51.93 -0.40 0.30 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.67 7.68 -51.93 -0.40 0.28 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.96 6.75 -51.93 -0.35 0.61 16 44 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -32.44 358.82 -7.33 -39.77 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.18 Total: 4.78 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.33 Total: -15.44 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.76 Total: -24.38 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.97 Total: -25.73 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.44 -7.33 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.773 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds