Wall clock time and date at job start Tue Mar 31 2020 12:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99916 * 2 1 4 4 H 1.09002 * 109.47645 * 29.99651 * 3 2 1 5 5 C 1.53004 * 109.47489 * 149.99902 * 3 2 1 6 6 O 1.45191 * 109.47105 * 294.99932 * 5 3 2 7 7 C 1.34757 * 117.00218 * 179.97438 * 6 5 3 8 8 O 1.21513 * 119.99823 * 0.02562 * 7 6 5 9 9 C 1.47396 * 120.00382 * 180.02562 * 7 6 5 10 10 C 1.39727 * 120.19979 * 359.96192 * 9 7 6 11 11 C 1.37807 * 119.91328 * 180.02562 * 10 9 7 12 12 C 1.38597 * 120.32919 * 359.97438 * 11 10 9 13 13 C 1.38017 * 120.41373 * 0.02562 * 12 11 10 14 14 C 1.38838 * 120.07918 * 359.97322 * 13 12 11 15 15 O 1.35498 * 120.16385 * 180.02562 * 14 13 12 16 16 C 1.34816 * 117.00238 * 354.40902 * 15 14 13 17 17 H 1.07995 * 119.99847 * 5.06099 * 16 15 14 18 18 C 1.38708 * 119.99941 * 185.06158 * 16 15 14 19 19 N 1.31514 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47282 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47293 * 119.99982 * 20 18 16 23 23 H 1.48500 * 109.47106 * 239.99982 * 20 18 16 24 24 C 1.53007 * 109.47170 * 270.00198 * 3 2 1 25 25 C 1.53776 * 113.61813 * 159.13679 * 24 3 2 26 26 C 1.53953 * 87.02164 * 220.04676 * 25 24 3 27 27 C 1.53773 * 113.61502 * 61.52405 * 24 3 2 28 28 H 1.09002 * 109.47519 * 59.99907 * 1 2 3 29 29 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47611 * 300.00091 * 1 2 3 31 31 H 1.09003 * 109.47159 * 174.99635 * 5 3 2 32 32 H 1.09004 * 109.46473 * 55.00215 * 5 3 2 33 33 H 1.08000 * 120.04958 * 0.04373 * 10 9 7 34 34 H 1.08001 * 119.83645 * 180.27327 * 11 10 9 35 35 H 1.08001 * 119.78884 * 180.02562 * 12 11 10 36 36 H 1.08003 * 119.95781 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99808 * 180.02562 * 19 18 16 38 38 H 1.09004 * 112.84699 * 290.32959 * 24 3 2 39 39 H 1.09001 * 113.61438 * 334.56790 * 25 24 3 40 40 H 1.09003 * 113.61677 * 105.46300 * 25 24 3 41 41 H 1.08998 * 113.53453 * 270.81519 * 26 25 24 42 42 H 1.08995 * 113.74588 * 139.93657 * 26 25 24 43 43 H 1.09000 * 113.61717 * 254.53197 * 27 24 3 44 44 H 1.09010 * 113.61578 * 25.43973 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9995 0.5138 5 6 3.3588 1.2634 0.7213 6 8 3.1495 0.9362 2.1203 7 6 4.2451 0.8584 2.9010 8 8 5.3453 1.0590 2.4257 9 6 4.1090 0.5300 4.3314 10 6 2.8459 0.2993 4.8826 11 6 2.7255 -0.0068 6.2208 12 6 3.8519 -0.0877 7.0243 13 6 5.1061 0.1376 6.4941 14 6 5.2472 0.4472 5.1481 15 8 6.4777 0.6682 4.6256 16 6 7.5142 0.6869 5.4875 17 1 7.3550 0.4492 6.5288 18 6 8.7852 1.0114 5.0366 19 7 8.9792 1.3004 3.7684 20 14 10.2213 1.0381 6.2309 21 1 9.7418 0.6791 7.5898 22 1 11.2477 0.0585 5.7928 23 1 10.8159 2.3986 6.2598 24 6 2.2175 1.7714 -1.4426 25 6 2.3475 3.2971 -1.5845 26 6 1.4918 3.1709 -2.8581 27 6 0.9120 1.8842 -2.2472 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.8426 2.2371 0.6443 32 1 3.9930 0.5053 0.2617 33 1 1.9651 0.3605 4.2606 34 1 1.7490 -0.1892 6.6445 35 1 3.7474 -0.3286 8.0719 36 1 5.9788 0.0722 7.1269 37 1 9.8681 1.5270 3.4530 38 1 3.0016 1.2166 -1.9580 39 1 1.8596 3.8533 -0.7840 40 1 3.3671 3.6328 -1.7738 41 1 2.0779 2.9998 -3.7610 42 1 0.7578 3.9681 -2.9745 43 1 0.7743 1.0808 -2.9709 44 1 0.0307 2.0533 -1.6283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849712406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:05 Heat of formation + Delta-G solvation = -108.566943 kcal Electronic energy + Delta-G solvation = -26853.230355 eV Core-core repulsion = 22930.739584 eV Total energy + Delta-G solvation = -3922.490771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.06074 -39.53733 -38.52362 -36.97449 -36.40029 -35.41091 -32.40039 -31.26915 -30.32525 -28.95559 -26.57312 -25.94490 -25.64013 -25.30329 -23.25610 -21.71231 -21.37471 -20.23649 -19.62811 -18.05946 -17.50163 -17.00285 -16.63487 -15.98319 -15.83739 -15.56085 -15.13566 -14.86086 -14.57464 -14.36081 -13.91048 -13.82494 -13.69912 -13.50054 -12.89099 -12.66207 -12.59173 -12.44071 -12.29526 -12.08921 -11.75340 -11.67982 -11.36567 -11.26734 -11.08227 -10.95531 -10.90995 -10.76558 -10.55703 -10.47355 -10.44553 -10.02174 -9.74995 -9.48321 -9.16605 -8.92828 -8.30917 -7.36681 -6.50178 -4.09960 1.62721 2.31963 3.09410 3.10341 3.16140 3.24528 3.49689 3.65323 3.89485 4.34845 4.46813 4.50116 4.57224 4.64631 4.94501 5.02755 5.13359 5.15563 5.17783 5.29284 5.34392 5.47803 5.49254 5.54471 5.58090 5.61206 5.61757 5.66563 5.67861 5.75655 5.79222 5.89332 5.98689 6.12714 6.15319 6.23465 6.58824 6.66527 6.90854 7.02389 7.12875 7.15712 7.24267 7.32633 7.67082 7.88457 8.76861 8.90187 9.59757 10.63669 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.003256 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.572325 B = 8598.068864 C =10198.852341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.373 6.373 3 C 0.104 3.896 4 H 0.071 0.929 5 C 0.073 3.927 6 O -0.361 6.361 7 C 0.498 3.502 8 O -0.478 6.478 9 C -0.215 4.215 10 C -0.015 4.015 11 C -0.235 4.235 12 C -0.044 4.044 13 C -0.240 4.240 14 C 0.192 3.808 15 O -0.126 6.126 16 C -0.403 4.403 17 H 0.097 0.903 18 C 0.044 3.956 19 N -0.832 5.832 20 Si 0.943 3.057 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.134 4.134 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.272 0.728 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 1.513 -6.864 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.291 6.291 3 C 0.046 3.954 4 H 0.089 0.911 5 C -0.002 4.002 6 O -0.280 6.280 7 C 0.343 3.657 8 O -0.364 6.364 9 C -0.217 4.217 10 C -0.033 4.033 11 C -0.254 4.254 12 C -0.063 4.063 13 C -0.259 4.259 14 C 0.132 3.868 15 O -0.024 6.024 16 C -0.478 4.478 17 H 0.114 0.886 18 C -0.164 4.164 19 N -0.463 5.463 20 Si 0.767 3.233 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.149 4.149 25 C -0.175 4.175 26 C -0.179 4.179 27 C -0.171 4.171 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.114 1.531 -7.466 16.927 hybrid contribution 0.615 0.186 0.552 0.847 sum -14.499 1.716 -6.914 16.155 Atomic orbital electron populations 1.22942 0.81483 1.02695 1.00052 1.87972 1.19386 1.26876 1.94895 1.22159 0.94059 0.85570 0.93654 0.91130 1.22941 0.96192 1.01856 0.79164 1.86512 1.37687 1.82825 1.20984 1.21093 0.82098 0.75349 0.87169 1.90997 1.26265 1.44739 1.74438 1.18037 0.92718 1.21307 0.89687 1.20957 0.95036 0.92554 0.94772 1.20537 0.97946 1.12742 0.94167 1.20962 0.92253 0.94454 0.98584 1.21110 0.98328 1.11198 0.95219 1.19233 0.85923 0.90818 0.90817 1.84146 1.10639 1.72468 1.35124 1.21581 0.85321 1.49091 0.91844 0.88606 1.25418 0.98115 0.95825 0.96997 1.70130 1.23147 1.39324 1.13711 0.85629 0.79869 0.78445 0.79368 1.18894 1.19954 1.19960 1.23025 0.99509 0.96972 0.95410 1.22998 1.01051 0.95204 0.98249 1.22845 0.99457 0.97942 0.97613 1.22963 0.96820 0.98168 0.99195 0.93626 0.89894 0.94018 0.90179 0.90776 0.85828 0.87022 0.86982 0.84833 0.91802 0.88176 0.89816 0.90834 0.90103 0.91402 0.91175 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.58 101.05 1.07 1.31 16 2 O -0.37 -5.13 10.28 -38.79 -0.40 -5.52 16 3 C 0.10 1.32 2.30 -26.73 -0.06 1.26 16 4 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 5 C 0.07 1.20 5.12 37.16 0.19 1.39 16 6 O -0.36 -7.06 9.44 -43.43 -0.41 -7.47 16 7 C 0.50 11.72 7.89 34.46 0.27 11.99 16 8 O -0.48 -13.21 14.96 -26.59 -0.40 -13.61 16 9 C -0.21 -4.92 5.89 -104.83 -0.62 -5.54 16 10 C -0.01 -0.28 9.61 -39.18 -0.38 -0.65 16 11 C -0.23 -4.00 10.02 -39.61 -0.40 -4.40 16 12 C -0.04 -0.78 10.03 -39.53 -0.40 -1.18 16 13 C -0.24 -5.16 9.16 -39.44 -0.36 -5.52 16 14 C 0.19 4.81 6.66 -38.58 -0.26 4.56 16 15 O -0.13 -3.71 7.84 -21.00 -0.16 -3.87 16 16 C -0.40 -11.32 9.49 30.91 0.29 -11.03 16 17 H 0.10 2.44 5.21 -52.49 -0.27 2.16 16 18 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 19 N -0.83 -24.85 13.67 55.48 0.76 -24.09 16 20 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.13 -1.36 3.34 -89.81 -0.30 -1.66 16 25 C -0.14 -1.27 7.58 -25.83 -0.20 -1.46 16 26 C -0.14 -1.10 8.09 -25.83 -0.21 -1.31 16 27 C -0.13 -1.12 6.14 -25.92 -0.16 -1.28 16 28 H 0.05 0.37 5.04 -51.93 -0.26 0.10 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.12 2.02 7.61 -52.49 -0.40 1.62 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 2.80 5.64 -52.48 -0.30 2.51 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.63 6.49 -51.92 -0.34 0.30 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -33.93 367.63 -7.86 -41.78 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.16 Total: 4.31 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.60 Total: -12.38 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.76 Total: -24.09 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -1.37 Total: -30.47 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.93 -7.86 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849712406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.782 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds