Wall clock time and date at job start Tue Mar 31 2020 12:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46833 * 111.00029 * 2 1 4 4 C 1.53222 * 109.42675 * 187.84900 * 3 2 1 5 5 C 1.52691 * 109.01124 * 303.23328 * 4 3 2 6 6 C 1.53404 * 113.74546 * 185.16395 * 5 4 3 7 7 C 1.54034 * 86.13090 * 137.77270 * 6 5 4 8 8 N 1.47039 * 113.68126 * 282.25641 * 5 4 3 9 9 C 1.34770 * 134.57949 * 41.13630 * 8 5 4 10 10 O 1.21762 * 120.00142 * 354.22223 * 9 8 5 11 11 C 1.46234 * 120.00274 * 174.21930 * 9 8 5 12 12 S 1.75666 * 125.22677 * 359.70054 * 11 9 8 13 13 C 1.75475 * 92.09423 * 179.91540 * 12 11 9 14 14 C 1.32767 * 111.35717 * 0.35339 * 13 12 11 15 15 C 1.39545 * 125.23052 * 179.97438 * 11 9 8 16 16 C 1.40536 * 123.71392 * 0.02562 * 15 11 9 17 17 H 1.07999 * 120.00185 * 34.29353 * 16 15 11 18 18 C 1.40309 * 120.00210 * 214.29512 * 16 15 11 19 19 N 1.30639 * 119.99812 * 5.18550 * 18 16 15 20 20 Si 1.86800 * 120.00147 * 185.18939 * 18 16 15 21 21 H 1.48501 * 109.46847 * 90.00001 * 20 18 16 22 22 H 1.48497 * 109.46940 * 209.99747 * 20 18 16 23 23 H 1.48504 * 109.47229 * 329.99886 * 20 18 16 24 24 C 1.52695 * 112.87118 * 53.64447 * 5 4 3 25 25 C 1.46826 * 110.99733 * 124.55859 * 2 1 3 26 26 H 1.09000 * 109.47240 * 59.99755 * 1 2 3 27 27 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46859 * 299.99997 * 1 2 3 29 29 H 1.08997 * 109.47985 * 67.85829 * 3 2 1 30 30 H 1.09008 * 109.48773 * 307.84290 * 3 2 1 31 31 H 1.09005 * 109.54614 * 183.37576 * 4 3 2 32 32 H 1.09005 * 109.55081 * 63.09493 * 4 3 2 33 33 H 1.08999 * 113.77039 * 252.07711 * 6 5 4 34 34 H 1.09000 * 113.76529 * 23.46684 * 6 5 4 35 35 H 1.08999 * 113.75474 * 91.09557 * 7 6 5 36 36 H 1.09000 * 113.75778 * 222.44909 * 7 6 5 37 37 H 1.08000 * 124.32078 * 180.11356 * 13 12 11 38 38 H 1.07999 * 122.78049 * 179.75945 * 14 13 12 39 39 H 0.97006 * 119.99975 * 179.97438 * 19 18 16 40 40 H 1.09005 * 109.54644 * 66.22907 * 24 5 4 41 41 H 1.09000 * 109.54537 * 186.50068 * 24 5 4 42 42 H 1.09007 * 109.47659 * 292.14466 * 25 2 1 43 43 H 1.08999 * 109.48226 * 52.16157 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5142 1.3336 -0.1973 5 6 4.1373 0.4724 0.8989 6 6 5.6711 0.4620 0.8793 7 6 5.5875 0.5808 2.4128 8 7 4.2441 1.1548 2.1969 9 6 3.4406 1.9739 2.9040 10 8 2.3979 2.3726 2.4177 11 6 3.8208 2.3836 4.2552 12 16 5.2841 1.8868 5.0907 13 6 4.8656 2.8224 6.5150 14 6 3.7051 3.4483 6.3585 15 6 3.0745 3.2250 5.0813 16 6 1.8434 3.7918 4.7095 17 1 1.1632 3.2392 4.0783 18 6 1.4980 5.0755 5.1582 19 7 2.3606 5.7844 5.8364 20 14 -0.1953 5.7709 4.7858 21 1 -1.1312 5.4071 5.8799 22 1 -0.1104 7.2495 4.6782 23 1 -0.6903 5.2088 3.5035 24 6 3.5142 -0.9189 0.9866 25 6 1.9951 -0.7776 1.1289 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7639 1.8489 0.9518 30 1 1.5370 1.9362 -0.8115 31 1 3.9146 2.3457 -0.1378 32 1 3.7450 0.9054 -1.1729 33 1 6.0998 -0.4789 0.5344 34 1 6.1102 1.3339 0.3945 35 1 5.5770 -0.3799 2.9277 36 1 6.3026 1.2848 2.8384 37 1 5.4724 2.8787 7.4066 38 1 3.2700 4.0733 7.1243 39 1 2.1219 6.6721 6.1463 40 1 3.7451 -1.4797 0.0809 41 1 3.9146 -1.4437 1.8541 42 1 1.7637 -0.2649 2.0626 43 1 1.5369 -1.7665 1.1341 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889219891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:00 Heat of formation + Delta-G solvation = 16.449212 kcal Electronic energy + Delta-G solvation = -26016.814216 eV Core-core repulsion = 22574.790174 eV Total energy + Delta-G solvation = -3442.024042 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86281 -39.01551 -38.17583 -37.46148 -34.87934 -32.85326 -31.88000 -30.94048 -30.27441 -27.75367 -27.07073 -24.58066 -24.22865 -23.92944 -22.51643 -21.74815 -20.59216 -19.38412 -18.32872 -17.94346 -17.17468 -16.75030 -16.59926 -16.25356 -15.98395 -15.72770 -15.33902 -15.29996 -14.71127 -14.29054 -14.20687 -14.09188 -13.77937 -13.46628 -13.41696 -13.28211 -13.09508 -13.08594 -12.87508 -12.77302 -12.61985 -12.30933 -12.22808 -12.11802 -12.03872 -11.84799 -11.59022 -11.34858 -11.11694 -10.92501 -10.14317 -9.51981 -9.23006 -9.05923 -8.86363 -8.81835 -6.44154 0.28732 1.28519 1.29146 1.35119 1.42160 1.74025 1.95962 2.14525 2.17008 2.58262 3.04886 3.25404 3.46625 3.82679 3.89832 4.02871 4.20644 4.27120 4.36867 4.39241 4.51319 4.52584 4.58476 4.60407 4.60949 4.71184 4.83227 4.88317 4.90075 4.98555 5.00381 5.03623 5.08532 5.14498 5.17836 5.35900 5.41761 5.45398 5.51791 5.74832 5.94218 6.11494 6.14357 6.38660 6.60064 6.78002 7.11198 7.86699 8.15400 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.006006 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.871155 B = 4660.963929 C = 6429.430426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.534 5.534 3 C 0.004 3.996 4 C -0.094 4.094 5 C 0.153 3.847 6 C -0.119 4.119 7 C 0.095 3.905 8 N -0.652 5.652 9 C 0.612 3.388 10 O -0.578 6.578 11 C -0.444 4.444 12 S 0.037 5.963 13 C -0.205 4.205 14 C -0.127 4.127 15 C 0.119 3.881 16 C -0.426 4.426 17 H 0.071 0.929 18 C 0.037 3.963 19 N -0.811 5.811 20 Si 0.982 3.018 21 H -0.250 1.250 22 H -0.257 1.257 23 H -0.276 1.276 24 C -0.100 4.100 25 C 0.059 3.941 26 H 0.074 0.926 27 H 0.085 0.915 28 H -0.002 1.002 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.174 0.826 38 H 0.127 0.873 39 H 0.296 0.704 40 H 0.110 0.890 41 H 0.078 0.922 42 H -0.010 1.010 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 -10.341 -7.110 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.259 5.259 3 C -0.123 4.123 4 C -0.133 4.133 5 C 0.069 3.931 6 C -0.156 4.156 7 C -0.028 4.028 8 N -0.388 5.388 9 C 0.411 3.589 10 O -0.464 6.464 11 C -0.562 4.562 12 S 0.295 5.705 13 C -0.339 4.339 14 C -0.160 4.160 15 C 0.107 3.893 16 C -0.458 4.458 17 H 0.089 0.911 18 C -0.180 4.180 19 N -0.436 5.436 20 Si 0.803 3.197 21 H -0.175 1.175 22 H -0.181 1.181 23 H -0.201 1.201 24 C -0.138 4.138 25 C -0.069 4.069 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.016 0.984 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.191 0.809 38 H 0.144 0.856 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.009 0.991 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.863 -10.913 -7.902 14.693 hybrid contribution -2.441 2.214 1.474 3.610 sum 3.422 -8.699 -6.428 11.344 Atomic orbital electron populations 1.22344 0.87506 1.02392 0.99817 1.62021 1.07624 1.13789 1.42431 1.22990 0.95911 0.89742 1.03662 1.21469 0.94318 0.98681 0.98800 1.21977 0.96235 0.92211 0.82648 1.23462 0.92970 1.04997 0.94192 1.23292 0.83022 0.98545 0.97907 1.50006 1.19512 1.47503 1.21760 1.16688 0.81700 0.77494 0.83063 1.90332 1.26834 1.58971 1.70234 1.23399 1.04810 1.27934 1.00092 1.82373 1.24592 1.54272 1.09291 1.25584 1.00863 1.04431 1.03062 1.21396 0.96280 1.00659 0.97644 1.18336 0.92165 0.88956 0.89865 1.19582 1.01338 1.00131 1.24772 0.91055 1.26838 1.02440 0.96730 0.92032 1.69663 1.36282 1.11120 1.26585 0.85200 0.76904 0.78061 0.79571 1.17451 1.18107 1.20070 1.21689 0.93263 0.94797 1.04076 1.22027 0.96819 0.97650 0.90430 0.90735 0.89661 0.98360 0.90623 0.92587 0.93488 0.88531 0.86060 0.88969 0.88910 0.90666 0.80881 0.85569 0.89334 0.87145 0.90298 0.99118 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.58 127.69 1.22 2.04 16 2 N -0.53 -17.00 4.86 -921.89 -4.48 -21.48 16 3 C 0.00 0.15 5.32 86.39 0.46 0.61 16 4 C -0.09 -2.98 5.26 30.57 0.16 -2.82 16 5 C 0.15 4.49 0.97 3.39 0.00 4.49 16 6 C -0.12 -2.56 7.45 31.09 0.23 -2.33 16 7 C 0.10 2.67 6.72 86.46 0.58 3.25 16 8 N -0.65 -24.66 3.29 -796.05 -2.62 -27.27 16 9 C 0.61 30.47 7.91 86.32 0.68 31.16 16 10 O -0.58 -32.23 11.09 -4.55 -0.05 -32.28 16 11 C -0.44 -22.85 6.50 24.66 0.16 -22.69 16 12 S 0.04 1.52 20.04 -56.49 -1.13 0.39 16 13 C -0.21 -8.66 11.07 66.64 0.74 -7.93 16 14 C -0.13 -6.34 9.00 22.60 0.20 -6.14 16 15 C 0.12 6.60 5.55 -20.89 -0.12 6.48 16 16 C -0.43 -24.60 8.21 23.33 0.19 -24.40 16 17 H 0.07 4.41 6.52 -2.91 -0.02 4.39 16 18 C 0.04 1.93 5.42 85.37 0.46 2.40 16 19 N -0.81 -41.74 11.31 21.89 0.25 -41.49 16 20 Si 0.98 40.81 29.57 68.60 2.03 42.84 16 21 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 C -0.10 -2.52 5.44 30.57 0.17 -2.36 16 25 C 0.06 1.84 5.49 86.39 0.47 2.31 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 28 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.08 3.61 3.79 -43.78 -0.17 3.44 16 30 H 0.06 1.98 8.10 -2.38 -0.02 1.96 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.12 1.67 8.09 -2.39 -0.02 1.65 16 34 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 35 H 0.09 2.28 7.76 -2.39 -0.02 2.26 16 36 H 0.08 2.22 6.84 -2.39 -0.02 2.20 16 37 H 0.17 5.87 8.06 -2.91 -0.02 5.85 16 38 H 0.13 6.36 7.01 -2.91 -0.02 6.34 16 39 H 0.30 13.58 8.29 -92.70 -0.77 12.81 16 40 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.08 1.86 7.48 -2.39 -0.02 1.84 16 42 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 43 H 0.09 2.31 8.05 -2.39 -0.02 2.29 16 Total: -1.00 -68.64 346.35 0.47 -68.17 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.86 Total: 27.06 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 5.62 Total: -15.93 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -6.85 Total: -90.25 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.05 Total: -32.28 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.13 Total: 0.39 kcal Total: -68.64 0.47 -68.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889219891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.619 kcal (2) G-P(sol) polarization free energy of solvation -68.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds