Wall clock time and date at job start Tue Mar 31 2020 12:14:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36935 * 119.99930 * 2 1
4 4 H 1.08008 * 119.99712 * 161.87565 * 3 2 1
5 5 C 1.38812 * 120.00175 * 342.14929 * 3 2 1
6 6 N 1.31616 * 119.99842 * 348.06042 * 5 3 2
7 7 Si 1.86806 * 119.99758 * 168.05963 * 5 3 2
8 8 H 1.48497 * 109.47304 * 0.02562 * 7 5 3
9 9 H 1.48506 * 109.46906 * 119.99947 * 7 5 3
10 10 H 1.48500 * 109.47009 * 240.00032 * 7 5 3
11 11 C 1.46497 * 119.99706 * 179.97438 * 2 1 3
12 12 H 1.09003 * 110.64125 * 181.68835 * 11 2 1
13 13 C 1.55154 * 110.72175 * 58.54837 * 11 2 1
14 14 C 1.54909 * 101.58467 * 206.13625 * 13 11 2
15 15 N 1.47421 * 104.83253 * 37.00480 * 14 13 11
16 16 C 1.34781 * 125.64942 * 155.92102 * 15 14 13
17 17 O 1.21280 * 120.00032 * 179.97438 * 16 15 14
18 18 C 1.50697 * 119.99749 * 359.97438 * 16 15 14
19 19 H 1.08997 * 115.55355 * 34.41692 * 18 16 15
20 20 C 1.53008 * 117.49436 * 248.74674 * 18 16 15
21 21 C 1.52997 * 117.49698 * 180.08951 * 18 16 15
22 22 H 1.08999 * 117.50394 * 359.97438 * 21 18 16
23 23 C 1.50707 * 117.50025 * 214.97548 * 21 18 16
24 24 C 1.38422 * 122.53682 * 119.73409 * 23 21 18
25 25 C 1.33391 * 114.91691 * 179.76476 * 24 23 21
26 26 S 1.75887 * 109.59451 * 0.47707 * 25 24 23
27 27 C 1.33384 * 122.53696 * 300.03028 * 23 21 18
28 28 C 1.47028 * 108.70424 * 335.87688 * 15 14 13
29 29 H 1.09004 * 109.46835 * 84.86180 * 1 2 3
30 30 H 1.08991 * 109.47189 * 204.86413 * 1 2 3
31 31 H 1.09007 * 109.47052 * 324.86447 * 1 2 3
32 32 H 0.97004 * 119.99476 * 179.97438 * 6 5 3
33 33 H 1.09000 * 111.00558 * 324.20694 * 13 11 2
34 34 H 1.09003 * 111.00660 * 88.01714 * 13 11 2
35 35 H 1.08990 * 110.37040 * 155.85072 * 14 13 11
36 36 H 1.09006 * 110.36541 * 278.06284 * 14 13 11
37 37 H 1.08993 * 117.49988 * 0.02562 * 20 18 16
38 38 H 1.09005 * 117.49546 * 145.02310 * 20 18 16
39 39 H 1.07997 * 122.54478 * 359.97438 * 24 23 21
40 40 H 1.07996 * 125.20387 * 180.20739 * 25 24 23
41 41 H 1.07997 * 125.20767 * 0.02562 * 27 23 21
42 42 H 1.09006 * 109.88043 * 241.64124 * 28 15 14
43 43 H 1.08993 * 109.88193 * 120.47538 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1896 1.2091 0.2910
5 6 1.5058 2.3591 -0.3685
6 7 0.3206 2.3082 -0.9386
7 14 2.3214 4.0102 -0.0552
8 1 3.6407 3.7958 0.5919
9 1 2.5131 4.7203 -1.3453
10 1 1.4592 4.8271 0.8362
11 6 2.1974 -1.2687 0.0006
12 1 3.2726 -1.0917 0.0305
13 6 1.8161 -2.1233 -1.2370
14 6 2.1007 -3.5572 -0.7246
15 7 1.6924 -3.5397 0.6919
16 6 1.3252 -4.6150 1.4169
17 8 1.0077 -4.4825 2.5798
18 6 1.3093 -5.9818 0.7824
19 1 2.0832 -6.1629 0.0365
20 6 -0.0531 -6.6422 0.5616
21 6 0.8812 -7.1617 1.6572
22 1 0.6115 -6.9495 2.6917
23 6 1.5615 -8.4857 1.4213
24 6 2.2907 -9.1334 2.4036
25 6 2.8238 -10.2982 2.0316
26 16 2.4161 -10.6240 0.3519
27 6 1.5113 -9.1192 0.2486
28 6 1.7530 -2.1552 1.1830
29 1 -0.3633 0.0920 -1.0236
30 1 -0.3633 -0.9323 0.4321
31 1 -0.3633 0.8405 0.5915
32 1 -0.1295 3.1281 -1.1957
33 1 0.7625 -1.9999 -1.4874
34 1 2.4494 -1.8797 -2.0902
35 1 1.5086 -4.2835 -1.2812
36 1 3.1625 -3.7876 -0.8121
37 1 -0.9378 -6.0880 0.8748
38 1 -0.1753 -7.2582 -0.3294
39 1 2.4156 -8.7282 3.3968
40 1 3.4187 -10.9408 2.6637
41 1 0.9946 -8.7626 -0.6301
42 1 2.4770 -2.0811 1.9945
43 1 0.7689 -1.8422 1.5316
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000971787533.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:20
Heat of formation + Delta-G solvation = 60.587341 kcal
Electronic energy + Delta-G solvation = -24101.315118 eV
Core-core repulsion = 20661.205049 eV
Total energy + Delta-G solvation = -3440.110069 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.27315 -38.89475 -37.46763 -35.56887 -34.81331 -31.64215 -29.81664 -29.56661
-28.08735 -26.10051 -25.54034 -24.66010 -22.66747 -22.23402 -21.64398 -19.25279
-18.91957 -18.76666 -18.26772 -17.06648 -16.89027 -15.95321 -15.78888 -15.29440
-14.73506 -14.28683 -13.78019 -13.59170 -13.44597 -13.29607 -13.26500 -12.94756
-12.62964 -12.60926 -12.36600 -12.13678 -11.97505 -11.71378 -11.41693 -11.05829
-10.96810 -10.88762 -10.78741 -10.68938 -10.57555 -10.43147 -10.23962 -9.90777
-9.86023 -9.67002 -9.06342 -8.59356 -8.56222 -8.32794 -6.88917 -5.76875
-3.20690 0.70126 1.37474 1.69220 2.26077 2.68831 3.17465 3.35914
3.43382 3.45090 3.81221 4.32887 4.45295 4.54650 4.66767 4.73860
4.90600 4.99698 5.03639 5.14685 5.26152 5.30289 5.36069 5.48244
5.55379 5.57434 5.62593 5.74746 5.79883 5.88788 5.93501 5.99410
6.08908 6.25650 6.29267 6.38592 6.55230 6.63396 6.80364 6.85319
7.41112 7.67762 7.78329 7.79608 8.31076 8.36908 9.17987 9.80514
10.26999 11.28042
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.036427 B = 0.002237 C = 0.002225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 768.475752 B =12514.361649 C =12581.121260
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.162 3.838
2 N -0.589 5.589
3 C -0.256 4.256
4 H 0.072 0.928
5 C 0.000 4.000
6 N -0.909 5.909
7 Si 0.908 3.092
8 H -0.278 1.278
9 H -0.290 1.290
10 H -0.289 1.289
11 C 0.173 3.827
12 H 0.079 0.921
13 C -0.151 4.151
14 C 0.100 3.900
15 N -0.607 5.607
16 C 0.553 3.447
17 O -0.547 6.547
18 C -0.169 4.169
19 H 0.123 0.877
20 C -0.142 4.142
21 C -0.067 4.067
22 H 0.128 0.872
23 C -0.066 4.066
24 C -0.123 4.123
25 C -0.212 4.212
26 S 0.090 5.910
27 C -0.213 4.213
28 C 0.086 3.914
29 H 0.028 0.972
30 H -0.001 1.001
31 H 0.051 0.949
32 H 0.252 0.748
33 H 0.075 0.925
34 H 0.078 0.922
35 H 0.069 0.931
36 H 0.065 0.935
37 H 0.106 0.894
38 H 0.105 0.895
39 H 0.143 0.857
40 H 0.165 0.835
41 H 0.165 0.835
42 H 0.060 0.940
43 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.862 -24.795 0.375 24.963
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.310 5.310
3 C -0.385 4.385
4 H 0.090 0.910
5 C -0.198 4.198
6 N -0.554 5.554
7 Si 0.738 3.262
8 H -0.203 1.203
9 H -0.217 1.217
10 H -0.216 1.216
11 C 0.063 3.937
12 H 0.097 0.903
13 C -0.192 4.192
14 C -0.023 4.023
15 N -0.340 5.340
16 C 0.341 3.659
17 O -0.426 6.426
18 C -0.190 4.190
19 H 0.141 0.859
20 C -0.180 4.180
21 C -0.088 4.088
22 H 0.146 0.854
23 C -0.078 4.078
24 C -0.154 4.154
25 C -0.347 4.347
26 S 0.353 5.647
27 C -0.349 4.349
28 C -0.038 4.038
29 H 0.047 0.953
30 H 0.017 0.983
31 H 0.070 0.930
32 H 0.063 0.937
33 H 0.094 0.906
34 H 0.096 0.904
35 H 0.088 0.912
36 H 0.083 0.917
37 H 0.124 0.876
38 H 0.123 0.877
39 H 0.161 0.839
40 H 0.182 0.818
41 H 0.182 0.818
42 H 0.079 0.921
43 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 2.896 -25.788 -0.030 25.950
hybrid contribution 0.144 2.090 0.927 2.290
sum 3.040 -23.698 0.897 23.909
Atomic orbital electron populations
1.20840 0.82148 0.95724 0.99499 1.43931 1.02075 0.99896 1.85081
1.19311 0.95687 0.84485 1.39019 0.90973 1.24952 0.97282 0.98360
0.99163 1.70116 1.15181 1.26356 1.43766 0.86134 0.78634 0.83999
0.77459 1.20322 1.21739 1.21595 1.21278 0.96272 0.85922 0.90263
0.90330 1.23389 1.02908 0.92616 1.00280 1.22360 0.99339 0.99376
0.81256 1.48396 1.65558 1.07574 1.12459 1.19190 0.76952 0.84141
0.85587 1.90683 1.49348 1.85829 1.16696 1.22329 1.01351 0.91399
1.03959 0.85915 1.23102 0.92727 1.01912 1.00259 1.20744 1.00918
0.88850 0.98243 0.85405 1.18223 1.00113 0.96400 0.93077 1.20076
0.99209 0.94983 1.01090 1.25593 1.08307 1.02025 0.98787 1.84269
1.49677 1.21577 1.09136 1.25454 1.07792 0.99367 1.02255 1.22777
1.02394 0.79612 0.98983 0.95320 0.98280 0.93037 0.93750 0.90595
0.90364 0.91247 0.91693 0.87571 0.87710 0.83929 0.81795 0.81761
0.92124 0.90807
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.95 7.66 59.85 0.46 4.41 16
2 N -0.59 -14.29 2.94 -171.39 -0.50 -14.79 16
3 C -0.26 -6.83 9.69 -15.06 -0.15 -6.97 16
4 H 0.07 1.87 7.79 -52.48 -0.41 1.46 16
5 C 0.00 0.01 5.14 -17.43 -0.09 -0.08 16
6 N -0.91 -25.97 10.35 55.49 0.57 -25.40 16
7 Si 0.91 21.55 29.57 -169.99 -5.03 16.52 16
8 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
11 C 0.17 3.37 3.45 -66.10 -0.23 3.14 16
12 H 0.08 1.50 7.90 -51.93 -0.41 1.09 16
13 C -0.15 -2.47 6.65 -24.58 -0.16 -2.64 16
14 C 0.10 1.32 6.48 -2.53 -0.02 1.30 16
15 N -0.61 -9.68 3.33 -170.52 -0.57 -10.25 16
16 C 0.55 8.80 7.63 -10.99 -0.08 8.71 16
17 O -0.55 -10.64 16.58 5.56 0.09 -10.55 16
18 C -0.17 -1.96 4.91 -91.77 -0.45 -2.41 16
19 H 0.12 1.24 7.78 -51.93 -0.40 0.84 16
20 C -0.14 -1.38 9.63 -26.69 -0.26 -1.64 16
21 C -0.07 -0.71 5.66 -91.73 -0.52 -1.23 16
22 H 0.13 1.54 7.67 -51.93 -0.40 1.14 16
23 C -0.07 -0.64 5.52 -106.25 -0.59 -1.22 16
24 C -0.12 -1.13 9.98 -41.21 -0.41 -1.54 16
25 C -0.21 -1.67 11.23 29.04 0.33 -1.34 16
26 S 0.09 0.69 23.34 -107.50 -2.51 -1.82 16
27 C -0.21 -1.80 10.39 29.04 0.30 -1.50 16
28 C 0.09 1.61 6.39 -3.06 -0.02 1.59 16
29 H 0.03 0.74 7.49 -51.93 -0.39 0.36 16
30 H 0.00 -0.03 6.26 -51.93 -0.33 -0.35 16
31 H 0.05 1.37 6.94 -51.93 -0.36 1.01 16
32 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16
33 H 0.08 1.36 7.28 -51.93 -0.38 0.98 16
34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16
35 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16
36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
37 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16
38 H 0.10 0.77 6.55 -51.93 -0.34 0.43 16
39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16
40 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16
41 H 0.16 1.12 6.64 -52.49 -0.35 0.77 16
42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
43 H 0.07 1.53 6.11 -51.93 -0.32 1.22 16
LS Contribution 360.93 15.07 5.44 5.44
Total: -1.00 -31.08 360.93 -10.54 -41.62
By element:
Atomic # 1 Polarization: 6.79 SS G_CDS: -6.15 Total: 0.65 kcal
Atomic # 6 Polarization: 0.47 SS G_CDS: -1.89 Total: -1.42 kcal
Atomic # 7 Polarization: -49.94 SS G_CDS: -0.50 Total: -50.44 kcal
Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal
Atomic # 16 Polarization: 0.69 SS G_CDS: -2.51 Total: -1.82 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -31.08 -10.54 -41.62 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000971787533.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.207 kcal
(2) G-P(sol) polarization free energy of solvation -31.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.124 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds