Wall clock time and date at job start Tue Mar 31 2020 12:14:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36935 * 119.99930 * 2 1
4 4 H 1.08008 * 119.99712 * 161.87565 * 3 2 1
5 5 C 1.38812 * 120.00175 * 342.14929 * 3 2 1
6 6 N 1.31616 * 119.99842 * 348.06042 * 5 3 2
7 7 Si 1.86806 * 119.99758 * 168.05963 * 5 3 2
8 8 H 1.48497 * 109.47304 * 0.02562 * 7 5 3
9 9 H 1.48506 * 109.46906 * 119.99947 * 7 5 3
10 10 H 1.48500 * 109.47009 * 240.00032 * 7 5 3
11 11 C 1.46497 * 119.99706 * 179.97438 * 2 1 3
12 12 H 1.09003 * 110.64125 * 181.68835 * 11 2 1
13 13 C 1.55154 * 110.72175 * 58.54837 * 11 2 1
14 14 C 1.54909 * 101.58467 * 206.13625 * 13 11 2
15 15 N 1.47421 * 104.83253 * 37.00480 * 14 13 11
16 16 C 1.34781 * 125.64942 * 155.92102 * 15 14 13
17 17 O 1.21280 * 120.00032 * 179.97438 * 16 15 14
18 18 C 1.50697 * 119.99749 * 359.97438 * 16 15 14
19 19 H 1.08997 * 115.55355 * 34.41692 * 18 16 15
20 20 C 1.53008 * 117.49436 * 248.74674 * 18 16 15
21 21 C 1.52997 * 117.49698 * 180.08951 * 18 16 15
22 22 H 1.08999 * 117.50394 * 359.97438 * 21 18 16
23 23 C 1.50707 * 117.50025 * 214.97548 * 21 18 16
24 24 C 1.38422 * 122.53682 * 119.73409 * 23 21 18
25 25 C 1.33391 * 114.91691 * 179.76476 * 24 23 21
26 26 S 1.75887 * 109.59451 * 0.47707 * 25 24 23
27 27 C 1.33384 * 122.53696 * 300.03028 * 23 21 18
28 28 C 1.47028 * 108.70424 * 335.87688 * 15 14 13
29 29 H 1.09004 * 109.46835 * 84.86180 * 1 2 3
30 30 H 1.08991 * 109.47189 * 204.86413 * 1 2 3
31 31 H 1.09007 * 109.47052 * 324.86447 * 1 2 3
32 32 H 0.97004 * 119.99476 * 179.97438 * 6 5 3
33 33 H 1.09000 * 111.00558 * 324.20694 * 13 11 2
34 34 H 1.09003 * 111.00660 * 88.01714 * 13 11 2
35 35 H 1.08990 * 110.37040 * 155.85072 * 14 13 11
36 36 H 1.09006 * 110.36541 * 278.06284 * 14 13 11
37 37 H 1.08993 * 117.49988 * 0.02562 * 20 18 16
38 38 H 1.09005 * 117.49546 * 145.02310 * 20 18 16
39 39 H 1.07997 * 122.54478 * 359.97438 * 24 23 21
40 40 H 1.07996 * 125.20387 * 180.20739 * 25 24 23
41 41 H 1.07997 * 125.20767 * 0.02562 * 27 23 21
42 42 H 1.09006 * 109.88043 * 241.64124 * 28 15 14
43 43 H 1.08993 * 109.88193 * 120.47538 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1896 1.2091 0.2910
5 6 1.5058 2.3591 -0.3685
6 7 0.3206 2.3082 -0.9386
7 14 2.3214 4.0102 -0.0552
8 1 3.6407 3.7958 0.5919
9 1 2.5131 4.7203 -1.3453
10 1 1.4592 4.8271 0.8362
11 6 2.1974 -1.2687 0.0006
12 1 3.2726 -1.0917 0.0305
13 6 1.8161 -2.1233 -1.2370
14 6 2.1007 -3.5572 -0.7246
15 7 1.6924 -3.5397 0.6919
16 6 1.3252 -4.6150 1.4169
17 8 1.0077 -4.4825 2.5798
18 6 1.3093 -5.9818 0.7824
19 1 2.0832 -6.1629 0.0365
20 6 -0.0531 -6.6422 0.5616
21 6 0.8812 -7.1617 1.6572
22 1 0.6115 -6.9495 2.6917
23 6 1.5615 -8.4857 1.4213
24 6 2.2907 -9.1334 2.4036
25 6 2.8238 -10.2982 2.0316
26 16 2.4161 -10.6240 0.3519
27 6 1.5113 -9.1192 0.2486
28 6 1.7530 -2.1552 1.1830
29 1 -0.3633 0.0920 -1.0236
30 1 -0.3633 -0.9323 0.4321
31 1 -0.3633 0.8405 0.5915
32 1 -0.1295 3.1281 -1.1957
33 1 0.7625 -1.9999 -1.4874
34 1 2.4494 -1.8797 -2.0902
35 1 1.5086 -4.2835 -1.2812
36 1 3.1625 -3.7876 -0.8121
37 1 -0.9378 -6.0880 0.8748
38 1 -0.1753 -7.2582 -0.3294
39 1 2.4156 -8.7282 3.3968
40 1 3.4187 -10.9408 2.6637
41 1 0.9946 -8.7626 -0.6301
42 1 2.4770 -2.0811 1.9945
43 1 0.7689 -1.8422 1.5316
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000971787533.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:20
Heat of formation + Delta-G solvation = 43.726710 kcal
Electronic energy + Delta-G solvation = -24102.046250 eV
Core-core repulsion = 20661.205049 eV
Total energy + Delta-G solvation = -3440.841201 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.40853 -39.88854 -38.76800 -36.60626 -36.40822 -33.44913 -31.32180 -30.29277
-29.51409 -28.11835 -26.45755 -25.78582 -24.25344 -23.47220 -22.35755 -20.87230
-20.02700 -19.51403 -18.98752 -18.97101 -17.94902 -17.52667 -16.77292 -16.44560
-16.31228 -15.65672 -15.13304 -14.98805 -14.62764 -14.44265 -14.29083 -14.08442
-14.04847 -13.59909 -13.50933 -13.23269 -13.06455 -13.00035 -12.84360 -12.67265
-12.53734 -12.36812 -12.25021 -12.04070 -11.82482 -11.73779 -11.63072 -11.52305
-11.45034 -10.95213 -10.64637 -9.68260 -9.65690 -9.18649 -8.87817 -7.84019
-5.29143 0.08905 0.79240 1.08522 1.37941 1.46687 1.48857 1.58465
1.67984 1.98920 2.50819 2.95335 3.28472 3.42284 3.57203 3.66239
3.80692 3.86294 3.98040 4.13976 4.16853 4.27351 4.33360 4.34025
4.45783 4.48352 4.65680 4.66621 4.76375 4.83191 4.90337 4.92520
4.98112 5.00000 5.18791 5.23196 5.26575 5.37273 5.39848 5.44240
5.59175 5.61205 5.71571 6.28646 6.54588 7.09696 7.13332 7.83249
8.26152 9.20120
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.036427 B = 0.002237 C = 0.002225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 768.475752 B =12514.361649 C =12581.121260
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.184 3.816
2 N -0.606 5.606
3 C -0.261 4.261
4 H 0.078 0.922
5 C -0.056 4.056
6 N -0.940 5.940
7 Si 0.971 3.029
8 H -0.266 1.266
9 H -0.291 1.291
10 H -0.295 1.295
11 C 0.166 3.834
12 H 0.084 0.916
13 C -0.142 4.142
14 C 0.108 3.892
15 N -0.609 5.609
16 C 0.547 3.453
17 O -0.593 6.593
18 C -0.171 4.171
19 H 0.148 0.852
20 C -0.126 4.126
21 C -0.066 4.066
22 H 0.105 0.895
23 C -0.081 4.081
24 C -0.146 4.146
25 C -0.213 4.213
26 S 0.111 5.889
27 C -0.212 4.212
28 C 0.097 3.903
29 H 0.008 0.992
30 H 0.017 0.983
31 H 0.019 0.981
32 H 0.247 0.753
33 H 0.057 0.943
34 H 0.090 0.910
35 H 0.102 0.898
36 H 0.093 0.907
37 H 0.095 0.905
38 H 0.138 0.862
39 H 0.141 0.859
40 H 0.183 0.817
41 H 0.185 0.815
42 H 0.053 0.947
43 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.233 -27.250 -1.081 27.598
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.327 5.327
3 C -0.391 4.391
4 H 0.096 0.904
5 C -0.250 4.250
6 N -0.587 5.587
7 Si 0.799 3.201
8 H -0.190 1.190
9 H -0.218 1.218
10 H -0.222 1.222
11 C 0.057 3.943
12 H 0.102 0.898
13 C -0.182 4.182
14 C -0.013 4.013
15 N -0.341 5.341
16 C 0.338 3.662
17 O -0.474 6.474
18 C -0.192 4.192
19 H 0.166 0.834
20 C -0.163 4.163
21 C -0.088 4.088
22 H 0.123 0.877
23 C -0.093 4.093
24 C -0.176 4.176
25 C -0.348 4.348
26 S 0.375 5.625
27 C -0.348 4.348
28 C -0.028 4.028
29 H 0.026 0.974
30 H 0.036 0.964
31 H 0.038 0.962
32 H 0.057 0.943
33 H 0.076 0.924
34 H 0.108 0.892
35 H 0.121 0.879
36 H 0.111 0.889
37 H 0.113 0.887
38 H 0.156 0.844
39 H 0.158 0.842
40 H 0.201 0.799
41 H 0.202 0.798
42 H 0.071 0.929
43 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 4.302 -28.291 -1.502 28.656
hybrid contribution -0.262 2.749 1.438 3.114
sum 4.040 -25.542 -0.064 25.860
Atomic orbital electron populations
1.20459 0.82778 0.95186 0.97637 1.44094 1.02022 1.01143 1.85478
1.19657 0.95975 0.85602 1.37836 0.90443 1.25709 0.98051 1.01549
0.99700 1.70271 1.16556 1.26662 1.45225 0.85145 0.78041 0.79921
0.76969 1.19011 1.21790 1.22230 1.21470 0.96038 0.84613 0.92135
0.89813 1.23223 1.01975 0.94036 0.98987 1.22509 1.01632 0.97820
0.79388 1.48483 1.65593 1.06369 1.13681 1.20003 0.75589 0.85496
0.85125 1.90661 1.51215 1.86668 1.18888 1.22291 1.03444 0.88689
1.04772 0.83444 1.23236 0.91214 1.00948 1.00893 1.20624 1.01482
0.89236 0.97414 0.87722 1.18170 1.01095 0.96162 0.93918 1.20203
1.00195 0.95836 1.01334 1.25878 1.07813 1.01720 0.99391 1.84235
1.48903 1.20808 1.08546 1.25712 1.07331 0.99395 1.02334 1.22392
1.00441 0.81537 0.98417 0.97391 0.96447 0.96220 0.94314 0.92375
0.89153 0.87930 0.88913 0.88661 0.84410 0.84171 0.79945 0.79815
0.92898 0.93632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.27 7.66 127.77 0.98 10.25 16
2 N -0.61 -29.78 2.94 -696.15 -2.05 -31.83 16
3 C -0.26 -14.02 9.69 84.03 0.81 -13.21 16
4 H 0.08 3.99 7.79 -2.91 -0.02 3.97 16
5 C -0.06 -3.08 5.14 84.86 0.44 -2.64 16
6 N -0.94 -55.11 10.35 21.65 0.22 -54.89 16
7 Si 0.97 44.79 29.57 68.60 2.03 46.82 16
8 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
9 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16
10 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16
11 C 0.17 6.38 3.45 46.18 0.16 6.54 16
12 H 0.08 3.12 7.90 -2.39 -0.02 3.10 16
13 C -0.14 -4.38 6.65 31.98 0.21 -4.16 16
14 C 0.11 2.48 6.48 86.86 0.56 3.05 16
15 N -0.61 -18.56 3.33 -811.80 -2.70 -21.26 16
16 C 0.55 16.92 7.63 87.66 0.67 17.59 16
17 O -0.59 -23.55 16.58 -3.03 -0.05 -23.61 16
18 C -0.17 -3.54 4.91 -11.54 -0.06 -3.60 16
19 H 0.15 2.34 7.78 -2.39 -0.02 2.32 16
20 C -0.13 -2.10 9.63 30.62 0.29 -1.81 16
21 C -0.07 -1.34 5.66 -11.51 -0.07 -1.40 16
22 H 0.10 2.59 7.67 -2.39 -0.02 2.57 16
23 C -0.08 -1.41 5.52 -20.92 -0.12 -1.52 16
24 C -0.15 -2.47 9.98 21.22 0.21 -2.26 16
25 C -0.21 -2.90 11.23 66.72 0.75 -2.15 16
26 S 0.11 1.38 23.34 -56.49 -1.32 0.07 16
27 C -0.21 -2.89 10.39 66.72 0.69 -2.20 16
28 C 0.10 3.63 6.39 86.73 0.55 4.19 16
29 H 0.01 0.42 7.49 -2.39 -0.02 0.40 16
30 H 0.02 0.79 6.26 -2.39 -0.01 0.77 16
31 H 0.02 1.08 6.94 -2.38 -0.02 1.06 16
32 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16
33 H 0.06 2.02 7.28 -2.39 -0.02 2.00 16
34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16
35 H 0.10 1.77 7.67 -2.39 -0.02 1.75 16
36 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16
37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
38 H 0.14 1.40 6.55 -2.38 -0.02 1.38 16
39 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16
40 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16
41 H 0.18 1.65 6.64 -2.91 -0.02 1.63 16
42 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16
43 H 0.05 1.95 6.11 -2.39 -0.01 1.94 16
Total: -1.00 -69.67 360.93 3.25 -66.43
By element:
Atomic # 1 Polarization: 10.60 SS G_CDS: 1.01 Total: 11.61 kcal
Atomic # 6 Polarization: 0.56 SS G_CDS: 6.10 Total: 6.65 kcal
Atomic # 7 Polarization: -103.45 SS G_CDS: -4.53 Total: -107.97 kcal
Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.61 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal
Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.07 kcal
Total: -69.67 3.25 -66.43 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000971787533.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.153 kcal
(2) G-P(sol) polarization free energy of solvation -69.671 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.727 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds