Wall clock time and date at job start Tue Mar 31 2020 12:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99528 * 2 1 4 4 O 1.21710 * 119.99640 * 180.36640 * 3 2 1 5 5 C 1.46580 * 120.00583 * 0.36943 * 3 2 1 6 6 S 1.75837 * 125.45623 * 350.36933 * 5 3 2 7 7 C 1.70612 * 91.56435 * 179.97438 * 6 5 3 8 8 C 1.33824 * 110.95558 * 0.22621 * 7 6 5 9 9 C 1.36646 * 125.46052 * 170.34592 * 5 3 2 10 10 C 1.50700 * 123.35298 * 0.03478 * 9 5 3 11 11 C 1.52997 * 117.50238 * 188.74504 * 10 9 5 12 12 C 1.52997 * 117.49612 * 120.08508 * 10 9 5 13 13 C 1.46497 * 120.00342 * 180.02562 * 2 1 3 14 14 C 1.53784 * 113.61117 * 39.13818 * 13 2 1 15 15 C 1.53952 * 87.01800 * 220.05062 * 14 13 2 16 16 N 1.46502 * 113.74300 * 139.94429 * 15 14 13 17 17 C 1.36939 * 119.99825 * 107.40160 * 16 15 14 18 18 H 1.07996 * 120.00064 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00044 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00215 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99976 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47019 * 89.99909 * 21 19 17 23 23 H 1.48504 * 109.47368 * 209.99962 * 21 19 17 24 24 H 1.48500 * 109.47159 * 330.00124 * 21 19 17 25 25 C 1.53776 * 87.11254 * 25.36205 * 15 14 13 26 26 H 1.09006 * 109.47112 * 83.49509 * 1 2 3 27 27 H 1.08997 * 109.47107 * 203.49111 * 1 2 3 28 28 H 1.09004 * 109.47349 * 323.49781 * 1 2 3 29 29 H 1.07994 * 124.52338 * 179.97438 * 7 6 5 30 30 H 1.08000 * 122.45225 * 179.74628 * 8 7 6 31 31 H 1.09000 * 115.55055 * 334.42505 * 10 9 5 32 32 H 1.09003 * 117.49340 * 0.02562 * 11 10 9 33 33 H 1.09001 * 117.49774 * 145.02044 * 11 10 9 34 34 H 1.08999 * 117.50375 * 214.98185 * 12 10 9 35 35 H 1.09005 * 117.49863 * 359.97438 * 12 10 9 36 36 H 1.08996 * 112.85144 * 170.33251 * 13 2 1 37 37 H 1.09003 * 113.61334 * 334.57100 * 14 13 2 38 38 H 1.09002 * 113.61384 * 105.46925 * 14 13 2 39 39 H 1.09000 * 113.53432 * 270.80998 * 15 14 13 40 40 H 0.96998 * 120.00084 * 287.40034 * 16 15 14 41 41 H 0.97000 * 120.00032 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.61294 * 220.08967 * 25 15 14 43 43 H 1.09004 * 113.61694 * 89.18678 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3559 1.1673 -0.0067 5 6 1.4060 2.4367 0.0082 6 16 -0.3283 2.6148 -0.2212 7 6 -0.2232 4.3097 -0.0564 8 6 1.0420 4.6929 0.1513 9 6 1.9609 3.6713 0.1957 10 6 3.4343 3.8915 0.4231 11 6 3.8853 5.2985 0.8204 12 6 4.1813 4.7676 -0.5845 13 6 2.1976 -1.2687 -0.0006 14 6 1.5591 -2.3482 -0.8905 15 6 1.9074 -3.3557 0.2202 16 7 0.8614 -4.3526 0.4617 17 6 1.0451 -5.6488 0.0603 18 1 1.9610 -5.9362 -0.4346 19 6 0.0543 -6.5935 0.2895 20 7 0.2311 -7.8395 -0.0959 21 14 -1.5297 -6.0966 1.1461 22 1 -2.5249 -5.6620 0.1333 23 1 -2.0676 -7.2554 1.9032 24 1 -1.2557 -4.9774 2.0829 25 6 1.8674 -2.1711 1.2000 26 1 -0.3634 0.1164 -1.0211 27 1 -0.3633 -0.9425 0.4096 28 1 -0.3634 0.8261 0.6113 29 1 -1.0649 4.9837 -0.1161 30 1 1.3206 5.7287 0.2774 31 1 3.9744 3.0490 0.8551 32 1 3.1162 6.0647 0.9177 33 1 4.7223 5.3817 1.5137 34 1 5.2130 4.5019 -0.8150 35 1 3.6071 5.1843 -1.4120 36 1 3.2667 -1.1400 -0.1692 37 1 0.4875 -2.2145 -1.0383 38 1 2.0977 -2.5206 -1.8223 39 1 2.8973 -3.7988 0.1111 40 1 0.0386 -4.0944 0.9058 41 1 -0.4616 -8.4995 0.0640 42 1 2.6546 -2.2009 1.9534 43 1 0.8802 -1.9889 1.6247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999790067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:27 Heat of formation + Delta-G solvation = 72.793672 kcal Electronic energy + Delta-G solvation = -24298.939986 eV Core-core repulsion = 20859.359223 eV Total energy + Delta-G solvation = -3439.580763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41225 -39.23593 -37.81707 -35.83470 -34.99664 -33.20995 -30.76746 -29.94642 -27.37099 -25.96814 -25.26948 -24.25008 -22.80616 -22.31716 -22.26048 -20.49349 -19.19445 -18.28022 -18.17040 -17.43729 -16.70868 -16.36171 -15.69823 -15.56292 -14.86963 -14.76014 -14.26940 -14.00683 -13.88322 -13.49218 -13.42638 -13.14602 -12.84891 -12.74889 -12.51390 -12.19904 -12.02543 -11.94395 -11.77708 -11.71826 -11.05189 -10.94361 -10.73968 -10.71644 -10.54375 -10.53086 -10.20585 -10.13876 -9.79141 -9.60964 -9.01452 -8.96052 -8.75354 -8.37424 -7.33177 -5.82391 -3.18762 0.30326 1.27152 1.70037 2.10990 2.89317 3.04587 3.32063 3.33800 3.40778 3.79065 4.35709 4.47671 4.53134 4.62416 4.75361 4.82010 4.86402 4.94091 5.00635 5.07310 5.21141 5.24556 5.25683 5.38214 5.39878 5.46433 5.59471 5.61898 5.71365 5.74539 5.80074 5.88638 6.00295 6.05469 6.09842 6.16131 6.25244 6.30495 6.44600 6.62209 6.87260 7.34093 7.93562 8.08343 8.37003 9.14012 9.86280 10.05559 11.35732 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024340 B = 0.002888 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.084840 B = 9691.855990 C =10532.628414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.594 5.594 3 C 0.588 3.412 4 O -0.528 6.528 5 C -0.267 4.267 6 S 0.226 5.774 7 C -0.258 4.258 8 C -0.149 4.149 9 C 0.008 3.992 10 C -0.098 4.098 11 C -0.179 4.179 12 C -0.161 4.161 13 C 0.120 3.880 14 C -0.175 4.175 15 C 0.176 3.824 16 N -0.734 5.734 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.166 4.166 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.163 0.837 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.002 28.374 0.641 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.325 5.325 3 C 0.376 3.624 4 O -0.407 6.407 5 C -0.387 4.387 6 S 0.497 5.503 7 C -0.395 4.395 8 C -0.180 4.180 9 C -0.007 4.007 10 C -0.118 4.118 11 C -0.216 4.216 12 C -0.199 4.199 13 C 0.017 3.983 14 C -0.217 4.217 15 C 0.064 3.936 16 N -0.373 5.373 17 C -0.379 4.379 18 H 0.110 0.890 19 C -0.191 4.191 20 N -0.579 5.579 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.207 4.207 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.181 0.819 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.545 27.106 0.282 27.113 hybrid contribution -0.419 1.484 0.831 1.752 sum -0.964 28.590 1.113 28.628 Atomic orbital electron populations 1.22014 0.80376 1.03615 1.02571 1.47683 1.06456 1.05949 1.72456 1.16979 0.86743 0.82038 0.76612 1.90771 1.12593 1.86607 1.50734 1.24402 0.97573 0.97528 1.19227 1.83678 1.02892 0.97553 1.66203 1.25812 1.01631 1.04148 1.07934 1.19797 0.91754 1.00513 1.05893 1.18644 0.95125 0.90542 0.96361 1.20899 0.90582 0.95506 1.04853 1.23072 1.03500 0.96450 0.98609 1.22941 1.01272 1.02803 0.92849 1.22649 0.97553 0.79696 0.98405 1.24347 1.01092 0.96432 0.99829 1.21344 0.93750 0.86688 0.91797 1.42699 1.17029 1.07002 1.70583 1.19140 1.03336 0.83500 1.31905 0.89005 1.24699 0.98197 0.95360 1.00794 1.69699 1.34564 1.01612 1.52003 0.86563 0.84832 0.77510 0.79687 1.21033 1.21671 1.20322 1.23971 1.01898 0.97184 0.97615 0.91394 0.88462 0.90870 0.81896 0.84396 0.85002 0.88741 0.88362 0.88254 0.88865 0.86244 0.90002 0.91462 0.89326 0.80520 0.92977 0.91208 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 7.64 59.85 0.46 1.09 16 2 N -0.59 -7.95 3.08 -174.58 -0.54 -8.49 16 3 C 0.59 8.51 7.62 -12.89 -0.10 8.41 16 4 O -0.53 -8.95 13.92 5.18 0.07 -8.87 16 5 C -0.27 -3.26 6.22 -36.79 -0.23 -3.49 16 6 S 0.23 2.01 17.92 -107.50 -1.93 0.08 16 7 C -0.26 -2.12 10.92 29.18 0.32 -1.80 16 8 C -0.15 -1.37 9.46 -41.41 -0.39 -1.76 16 9 C 0.01 0.10 5.60 -105.47 -0.59 -0.50 16 10 C -0.10 -1.10 5.35 -91.77 -0.49 -1.59 16 11 C -0.18 -1.48 9.95 -26.70 -0.27 -1.75 16 12 C -0.16 -1.49 10.21 -26.70 -0.27 -1.76 16 13 C 0.12 1.74 4.21 -67.12 -0.28 1.46 16 14 C -0.18 -2.76 7.31 -25.83 -0.19 -2.95 16 15 C 0.18 3.21 4.48 -67.03 -0.30 2.91 16 16 N -0.73 -16.58 5.21 -52.55 -0.27 -16.85 16 17 C -0.25 -6.82 10.45 -15.06 -0.16 -6.98 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 21 Si 0.88 21.41 27.73 -169.99 -4.71 16.70 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 25 C -0.17 -2.54 7.34 -25.92 -0.19 -2.73 16 26 H 0.07 0.65 7.76 -51.93 -0.40 0.24 16 27 H 0.10 1.05 6.09 -51.93 -0.32 0.73 16 28 H 0.07 0.68 4.64 -23.51 -0.11 0.57 16 29 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.14 1.01 6.61 -52.49 -0.35 0.67 16 31 H 0.13 1.75 6.40 -51.93 -0.33 1.42 16 32 H 0.09 0.67 6.56 -51.93 -0.34 0.32 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.12 1.82 7.21 -51.93 -0.37 1.45 16 37 H 0.08 1.28 6.66 -51.93 -0.35 0.93 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 40 H 0.36 7.95 5.79 -40.82 -0.24 7.72 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.17 6.89 -51.93 -0.36 0.82 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -32.22 352.68 -9.78 -42.00 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.71 Total: 9.51 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.78 Total: -11.37 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.04 Total: -53.36 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.70 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.93 Total: 0.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.22 -9.78 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999790067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.791 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds