Wall clock time and date at job start Tue Mar 31 2020 12:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99528 * 2 1 4 4 O 1.21710 * 119.99640 * 180.36640 * 3 2 1 5 5 C 1.46580 * 120.00583 * 0.36943 * 3 2 1 6 6 S 1.75837 * 125.45623 * 350.36933 * 5 3 2 7 7 C 1.70612 * 91.56435 * 179.97438 * 6 5 3 8 8 C 1.33824 * 110.95558 * 0.22621 * 7 6 5 9 9 C 1.36646 * 125.46052 * 170.34592 * 5 3 2 10 10 C 1.50700 * 123.35298 * 0.03478 * 9 5 3 11 11 C 1.52997 * 117.50238 * 188.74504 * 10 9 5 12 12 C 1.52997 * 117.49612 * 120.08508 * 10 9 5 13 13 C 1.46497 * 120.00342 * 180.02562 * 2 1 3 14 14 C 1.53784 * 113.61117 * 39.13818 * 13 2 1 15 15 C 1.53952 * 87.01800 * 220.05062 * 14 13 2 16 16 N 1.46502 * 113.74300 * 139.94429 * 15 14 13 17 17 C 1.36939 * 119.99825 * 107.40160 * 16 15 14 18 18 H 1.07996 * 120.00064 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00044 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00215 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99976 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47019 * 89.99909 * 21 19 17 23 23 H 1.48504 * 109.47368 * 209.99962 * 21 19 17 24 24 H 1.48500 * 109.47159 * 330.00124 * 21 19 17 25 25 C 1.53776 * 87.11254 * 25.36205 * 15 14 13 26 26 H 1.09006 * 109.47112 * 83.49509 * 1 2 3 27 27 H 1.08997 * 109.47107 * 203.49111 * 1 2 3 28 28 H 1.09004 * 109.47349 * 323.49781 * 1 2 3 29 29 H 1.07994 * 124.52338 * 179.97438 * 7 6 5 30 30 H 1.08000 * 122.45225 * 179.74628 * 8 7 6 31 31 H 1.09000 * 115.55055 * 334.42505 * 10 9 5 32 32 H 1.09003 * 117.49340 * 0.02562 * 11 10 9 33 33 H 1.09001 * 117.49774 * 145.02044 * 11 10 9 34 34 H 1.08999 * 117.50375 * 214.98185 * 12 10 9 35 35 H 1.09005 * 117.49863 * 359.97438 * 12 10 9 36 36 H 1.08996 * 112.85144 * 170.33251 * 13 2 1 37 37 H 1.09003 * 113.61334 * 334.57100 * 14 13 2 38 38 H 1.09002 * 113.61384 * 105.46925 * 14 13 2 39 39 H 1.09000 * 113.53432 * 270.80998 * 15 14 13 40 40 H 0.96998 * 120.00084 * 287.40034 * 16 15 14 41 41 H 0.97000 * 120.00032 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.61294 * 220.08967 * 25 15 14 43 43 H 1.09004 * 113.61694 * 89.18678 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3559 1.1673 -0.0067 5 6 1.4060 2.4367 0.0082 6 16 -0.3283 2.6148 -0.2212 7 6 -0.2232 4.3097 -0.0564 8 6 1.0420 4.6929 0.1513 9 6 1.9609 3.6713 0.1957 10 6 3.4343 3.8915 0.4231 11 6 3.8853 5.2985 0.8204 12 6 4.1813 4.7676 -0.5845 13 6 2.1976 -1.2687 -0.0006 14 6 1.5591 -2.3482 -0.8905 15 6 1.9074 -3.3557 0.2202 16 7 0.8614 -4.3526 0.4617 17 6 1.0451 -5.6488 0.0603 18 1 1.9610 -5.9362 -0.4346 19 6 0.0543 -6.5935 0.2895 20 7 0.2311 -7.8395 -0.0959 21 14 -1.5297 -6.0966 1.1461 22 1 -2.5249 -5.6620 0.1333 23 1 -2.0676 -7.2554 1.9032 24 1 -1.2557 -4.9774 2.0829 25 6 1.8674 -2.1711 1.2000 26 1 -0.3634 0.1164 -1.0211 27 1 -0.3633 -0.9425 0.4096 28 1 -0.3634 0.8261 0.6113 29 1 -1.0649 4.9837 -0.1161 30 1 1.3206 5.7287 0.2774 31 1 3.9744 3.0490 0.8551 32 1 3.1162 6.0647 0.9177 33 1 4.7223 5.3817 1.5137 34 1 5.2130 4.5019 -0.8150 35 1 3.6071 5.1843 -1.4120 36 1 3.2667 -1.1400 -0.1692 37 1 0.4875 -2.2145 -1.0383 38 1 2.0977 -2.5206 -1.8223 39 1 2.8973 -3.7988 0.1111 40 1 0.0386 -4.0944 0.9058 41 1 -0.4616 -8.4995 0.0640 42 1 2.6546 -2.2009 1.9534 43 1 0.8802 -1.9889 1.6247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999790067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:27 Heat of formation + Delta-G solvation = 53.374101 kcal Electronic energy + Delta-G solvation = -24299.782082 eV Core-core repulsion = 20859.359223 eV Total energy + Delta-G solvation = -3440.422858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48871 -40.17331 -38.97396 -36.54754 -36.33396 -34.95296 -32.65159 -30.84554 -28.32340 -27.06005 -26.56038 -25.74533 -23.90366 -23.28158 -23.02266 -21.73106 -20.60000 -19.42332 -19.09829 -19.03556 -17.69170 -17.26725 -16.70986 -16.65816 -16.39618 -15.78869 -15.57466 -15.28988 -14.71993 -14.62807 -14.52787 -14.33681 -14.14334 -13.77690 -13.60515 -13.55136 -13.32265 -13.23113 -12.84025 -12.75014 -12.37662 -12.28244 -12.09024 -11.82469 -11.79479 -11.65645 -11.54747 -11.40881 -11.27497 -10.92065 -10.84698 -9.88639 -9.65500 -9.29662 -9.14648 -8.01080 -5.35424 -0.47505 0.53092 1.01341 1.36273 1.39213 1.43962 1.51176 1.87609 2.06675 2.50270 3.05952 3.28440 3.45414 3.61700 3.72298 3.75474 3.78965 3.92005 4.03186 4.06233 4.09588 4.18609 4.20018 4.38881 4.43269 4.58125 4.66154 4.70822 4.75032 4.81242 4.84750 4.90658 4.98013 5.08291 5.11540 5.11876 5.23047 5.31780 5.35348 5.48043 5.59103 5.78443 6.22834 6.30177 7.03388 7.08428 7.83363 8.04099 9.20416 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024340 B = 0.002888 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.084840 B = 9691.855990 C =10532.628414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.595 5.595 3 C 0.582 3.418 4 O -0.567 6.567 5 C -0.311 4.311 6 S 0.264 5.736 7 C -0.244 4.244 8 C -0.162 4.162 9 C 0.007 3.993 10 C -0.127 4.127 11 C -0.157 4.157 12 C -0.161 4.161 13 C 0.132 3.868 14 C -0.162 4.162 15 C 0.158 3.842 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.055 0.945 19 C -0.067 4.067 20 N -0.986 5.986 21 Si 0.957 3.043 22 H -0.274 1.274 23 H -0.300 1.300 24 H -0.247 1.247 25 C -0.150 4.150 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.195 0.805 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.369 0.631 41 H 0.258 0.742 42 H 0.073 0.927 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 32.122 1.380 32.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.326 5.326 3 C 0.372 3.628 4 O -0.448 6.448 5 C -0.431 4.431 6 S 0.535 5.465 7 C -0.380 4.380 8 C -0.192 4.192 9 C -0.009 4.009 10 C -0.147 4.147 11 C -0.194 4.194 12 C -0.199 4.199 13 C 0.029 3.971 14 C -0.204 4.204 15 C 0.048 3.952 16 N -0.377 5.377 17 C -0.366 4.366 18 H 0.073 0.927 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.227 1.227 24 H -0.172 1.172 25 C -0.190 4.190 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.212 0.788 30 H 0.176 0.824 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.203 0.797 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.028 30.923 1.023 31.088 hybrid contribution 0.458 0.398 0.547 0.816 sum -2.570 31.321 1.569 31.466 Atomic orbital electron populations 1.22249 0.78504 1.04531 1.03900 1.47684 1.07591 1.05072 1.72214 1.17380 0.86543 0.83008 0.75847 1.90744 1.14315 1.87279 1.52501 1.24321 0.99920 0.96618 1.22195 1.83377 0.99733 0.98082 1.65299 1.26226 1.02221 1.04207 1.05389 1.19942 0.91672 1.00960 1.06629 1.18897 0.95441 0.91069 0.95531 1.20817 0.90949 0.96025 1.06882 1.23175 1.03747 0.94716 0.97737 1.22998 1.01045 1.02237 0.93576 1.22297 0.97132 0.80342 0.97375 1.24162 1.01730 0.95541 0.98926 1.21582 0.92245 0.86849 0.94552 1.42613 1.18342 1.05876 1.70854 1.19084 1.01687 0.85630 1.30190 0.92653 1.25570 1.02450 0.95228 1.02535 1.69898 1.36012 1.03182 1.54488 0.85376 0.79711 0.77600 0.78890 1.20033 1.22676 1.17164 1.23823 1.02821 0.95021 0.97336 0.90010 0.88160 0.89334 0.78789 0.82388 0.88105 0.86828 0.87575 0.88405 0.88165 0.87382 0.89030 0.91819 0.90662 0.79744 0.93373 0.90810 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 7.64 127.77 0.98 1.95 16 2 N -0.60 -15.27 3.08 -824.44 -2.54 -17.82 16 3 C 0.58 16.79 7.62 86.42 0.66 17.45 16 4 O -0.57 -19.96 13.92 -4.38 -0.06 -20.02 16 5 C -0.31 -7.21 6.22 24.07 0.15 -7.06 16 6 S 0.26 3.86 17.92 -56.49 -1.01 2.85 16 7 C -0.24 -3.01 10.92 66.82 0.73 -2.28 16 8 C -0.16 -2.48 9.46 21.09 0.20 -2.28 16 9 C 0.01 0.14 5.60 -20.42 -0.11 0.03 16 10 C -0.13 -2.80 5.35 -11.54 -0.06 -2.86 16 11 C -0.16 -2.32 9.95 30.62 0.30 -2.02 16 12 C -0.16 -2.84 10.21 30.62 0.31 -2.53 16 13 C 0.13 3.78 4.21 45.52 0.19 3.98 16 14 C -0.16 -5.00 7.31 31.18 0.23 -4.77 16 15 C 0.16 5.72 4.48 45.57 0.20 5.92 16 16 N -0.74 -32.72 5.21 -320.18 -1.67 -34.39 16 17 C -0.23 -13.12 10.45 84.03 0.88 -12.24 16 18 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.99 -62.78 13.97 21.65 0.30 -62.48 16 21 Si 0.96 43.87 27.73 68.60 1.90 45.77 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.25 -9.99 6.52 99.48 0.65 -9.34 16 25 C -0.15 -4.40 7.34 31.12 0.23 -4.17 16 26 H 0.08 1.32 7.76 -2.38 -0.02 1.30 16 27 H 0.10 1.84 6.09 -2.39 -0.01 1.82 16 28 H 0.09 1.39 4.64 -20.45 -0.09 1.29 16 29 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.16 1.70 6.61 -2.91 -0.02 1.68 16 31 H 0.10 2.85 6.40 -2.39 -0.02 2.84 16 32 H 0.11 1.24 6.56 -2.39 -0.02 1.22 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.11 3.38 7.21 -2.39 -0.02 3.36 16 37 H 0.09 2.67 6.66 -2.39 -0.02 2.65 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 40 H 0.37 15.33 5.79 -92.71 -0.54 14.79 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.09 2.49 6.89 -2.39 -0.02 2.48 16 Total: -1.00 -72.72 352.68 2.64 -70.09 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.36 Total: 30.26 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 5.35 Total: -14.27 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -3.91 Total: -114.68 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.77 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.01 Total: 2.85 kcal Total: -72.72 2.64 -70.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999790067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.460 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds