Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99866 * 2 1 4 4 O 1.21700 * 119.99616 * 186.34185 * 3 2 1 5 5 C 1.46580 * 120.00046 * 6.34340 * 3 2 1 6 6 C 1.35873 * 125.41625 * 187.46255 * 5 3 2 7 7 C 1.39165 * 113.99650 * 179.80354 * 6 5 3 8 8 C 1.34366 * 114.00197 * 0.46986 * 7 6 5 9 9 S 1.71477 * 111.07485 * 359.75645 * 8 7 6 10 10 C 1.52366 * 110.38911 * 179.77483 * 8 7 6 11 11 C 1.54168 * 104.90068 * 17.55805 * 10 8 7 12 12 C 1.52827 * 136.18594 * 180.11005 * 7 6 5 13 13 C 1.46500 * 120.00111 * 179.97438 * 2 1 3 14 14 H 1.09000 * 110.91859 * 176.09664 * 13 2 1 15 15 C 1.55152 * 111.00648 * 300.00114 * 13 2 1 16 16 C 1.54334 * 102.93965 * 82.56911 * 15 13 2 17 17 N 1.47022 * 107.27002 * 22.19647 * 16 15 13 18 18 C 1.36934 * 125.64505 * 181.02227 * 17 16 15 19 19 H 1.07997 * 119.99815 * 174.82945 * 18 17 16 20 20 C 1.38806 * 120.00212 * 354.82512 * 18 17 16 21 21 N 1.31625 * 120.00319 * 213.33393 * 20 18 17 22 22 Si 1.86801 * 119.99917 * 33.60836 * 20 18 17 23 23 H 1.48501 * 109.47280 * 174.14030 * 22 20 18 24 24 H 1.48497 * 109.47055 * 294.13706 * 22 20 18 25 25 H 1.48500 * 109.47205 * 54.13789 * 22 20 18 26 26 C 1.47423 * 108.70156 * 1.28626 * 17 16 15 27 27 H 1.08998 * 109.47214 * 275.85104 * 1 2 3 28 28 H 1.09005 * 109.47130 * 35.85193 * 1 2 3 29 29 H 1.09005 * 109.46916 * 155.84809 * 1 2 3 30 30 H 1.08000 * 122.99967 * 0.02562 * 6 5 3 31 31 H 1.09001 * 110.35661 * 136.40911 * 10 8 7 32 32 H 1.09004 * 110.35298 * 258.59876 * 10 8 7 33 33 H 1.08996 * 110.96080 * 91.40396 * 11 10 8 34 34 H 1.08998 * 110.95754 * 215.11020 * 11 10 8 35 35 H 1.09006 * 110.33093 * 43.82991 * 12 7 6 36 36 H 1.08993 * 110.33165 * 281.60351 * 12 7 6 37 37 H 1.08998 * 110.71957 * 324.21435 * 15 13 2 38 38 H 1.08999 * 110.87394 * 201.00366 * 15 13 2 39 39 H 1.08995 * 109.88039 * 262.77088 * 16 15 13 40 40 H 1.09000 * 110.00792 * 141.68398 * 16 15 13 41 41 H 0.96999 * 119.99349 * 5.28028 * 21 20 18 42 42 H 1.08996 * 110.36917 * 94.48769 * 26 17 16 43 43 H 1.09003 * 110.36144 * 216.80611 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3503 1.1704 -0.1164 5 6 1.4127 2.4328 0.1403 6 6 1.9567 3.6712 0.0120 7 6 1.0476 4.7099 0.1889 8 6 -0.2024 4.3011 0.4645 9 16 -0.2959 2.5895 0.5078 10 6 -1.1247 5.5000 0.6472 11 6 -0.3695 6.6823 0.0079 12 6 1.0982 6.2370 0.1579 13 6 2.1975 -1.2687 0.0006 14 1 3.2718 -1.0979 -0.0688 15 6 1.8484 -2.1119 1.2553 16 6 0.5310 -2.8061 0.8496 17 7 0.4793 -2.8197 -0.6196 18 6 -0.5404 -3.3304 -1.3776 19 1 -0.5235 -3.2181 -2.4515 20 6 -1.5958 -3.9925 -0.7655 21 7 -2.1871 -4.9961 -1.3782 22 14 -2.1818 -3.4542 0.9246 23 1 -3.3997 -4.2196 1.2932 24 1 -1.1140 -3.7117 1.9239 25 1 -2.4974 -2.0033 0.9001 26 6 1.7100 -2.1983 -1.1417 27 1 -0.3633 0.1048 1.0223 28 1 -0.3634 0.8330 -0.6019 29 1 -0.3633 -0.9378 -0.4205 30 1 3.0007 3.8348 -0.2111 31 1 -2.0711 5.3322 0.1330 32 1 -1.2978 5.6872 1.7070 33 1 -0.6378 6.7941 -1.0426 34 1 -0.5554 7.6058 0.5562 35 1 1.6866 6.5793 -0.6934 36 1 1.5174 6.6210 1.0879 37 1 1.6943 -1.4686 2.1216 38 1 2.6262 -2.8484 1.4570 39 1 -0.3184 -2.2495 1.2454 40 1 0.5149 -3.8272 1.2306 41 1 -1.8378 -5.3227 -2.2221 42 1 2.4577 -2.9611 -1.3585 43 1 1.4906 -1.6158 -2.0366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033638324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = 50.928522 kcal Electronic energy + Delta-G solvation = -25130.319597 eV Core-core repulsion = 21689.790690 eV Total energy + Delta-G solvation = -3440.528907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14069 -39.42737 -37.74790 -34.53771 -34.43901 -32.46934 -29.98475 -28.87456 -28.58584 -27.92845 -26.42169 -24.29982 -23.32932 -21.98233 -20.94887 -20.45971 -19.19766 -18.30019 -17.94742 -17.51603 -16.31177 -16.02135 -15.81846 -15.42076 -15.01633 -14.72413 -14.34749 -13.57163 -13.43732 -13.25090 -13.15806 -12.88246 -12.82031 -12.67124 -12.36269 -12.13037 -11.95489 -11.87063 -11.68669 -11.44905 -11.38666 -11.16393 -11.06890 -10.96454 -10.82927 -10.41275 -10.16997 -9.86367 -9.71388 -9.11447 -8.80896 -8.51608 -8.36240 -8.25826 -7.15255 -6.45447 -3.22596 0.53374 1.37955 1.97693 2.27007 3.07907 3.26477 3.37814 3.43977 3.64351 4.25397 4.29489 4.58061 4.63107 4.69348 4.86906 4.98021 5.09192 5.22324 5.24558 5.28025 5.32404 5.39453 5.40540 5.48664 5.53949 5.59605 5.65033 5.67424 5.79688 5.82727 5.87172 6.02518 6.14509 6.20436 6.22352 6.30566 6.38514 6.47635 6.52916 6.75772 6.84666 7.52620 7.63268 8.22895 8.25841 8.94367 9.51049 10.17244 11.01996 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.003944 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.136831 B = 7097.607674 C = 8021.545256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.586 5.586 3 C 0.589 3.411 4 O -0.541 6.541 5 C -0.265 4.265 6 C -0.040 4.040 7 C -0.145 4.145 8 C -0.250 4.250 9 S 0.253 5.747 10 C -0.045 4.045 11 C -0.119 4.119 12 C -0.057 4.057 13 C 0.123 3.877 14 H 0.109 0.891 15 C -0.141 4.141 16 C 0.116 3.884 17 N -0.607 5.607 18 C -0.348 4.348 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.900 5.900 22 Si 1.027 2.973 23 H -0.298 1.298 24 H -0.277 1.277 25 H -0.294 1.294 26 C 0.129 3.871 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.042 0.958 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 20.684 5.574 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.317 5.317 3 C 0.377 3.623 4 O -0.421 6.421 5 C -0.385 4.385 6 C -0.074 4.074 7 C -0.158 4.158 8 C -0.369 4.369 9 S 0.525 5.475 10 C -0.084 4.084 11 C -0.158 4.158 12 C -0.095 4.095 13 C 0.018 3.982 14 H 0.127 0.873 15 C -0.180 4.180 16 C -0.009 4.009 17 N -0.336 5.336 18 C -0.473 4.473 19 H 0.098 0.902 20 C -0.209 4.209 21 N -0.539 5.539 22 Si 0.858 3.142 23 H -0.225 1.225 24 H -0.203 1.203 25 H -0.222 1.222 26 C 0.002 3.998 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.371 19.280 6.863 20.602 hybrid contribution 2.128 1.405 -1.377 2.898 sum 4.498 20.686 5.486 21.868 Atomic orbital electron populations 1.22540 0.79238 1.06810 1.01979 1.47511 1.07184 1.05202 1.71799 1.16979 0.86491 0.82141 0.76697 1.90779 1.13156 1.86810 1.51320 1.24227 0.98345 0.97540 1.18358 1.20111 1.00639 0.89187 0.97429 1.20314 0.92673 0.96657 1.06116 1.26429 1.00948 1.02446 1.07054 1.83877 1.04341 0.94270 1.64995 1.20842 0.96765 0.89273 1.01484 1.22281 0.94507 0.97483 1.01481 1.20976 0.97198 0.89076 1.02298 1.22384 0.96794 0.82130 0.96844 0.87322 1.22992 0.98966 0.98811 0.97196 1.21984 0.94434 0.98369 0.86065 1.44925 1.17889 1.70685 1.00052 1.19926 1.01876 1.34310 0.91232 0.90159 1.25552 0.96630 0.94230 1.04448 1.70912 1.46118 1.18923 1.17901 0.84549 0.76131 0.75937 0.77545 1.22503 1.20343 1.22154 1.21958 0.89767 0.93391 0.94698 0.92466 0.91397 0.84289 0.83549 0.90590 0.89995 0.90722 0.90239 0.90881 0.90491 0.91169 0.90039 0.95526 0.93657 0.92390 0.94076 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 7.18 59.85 0.43 1.09 16 2 N -0.59 -10.09 2.91 -172.92 -0.50 -10.59 16 3 C 0.59 10.21 7.62 -12.89 -0.10 10.11 16 4 O -0.54 -10.56 16.24 5.19 0.08 -10.48 16 5 C -0.26 -3.97 6.15 -37.07 -0.23 -4.20 16 6 C -0.04 -0.55 10.00 -40.09 -0.40 -0.95 16 7 C -0.15 -1.71 6.49 -104.58 -0.68 -2.39 16 8 C -0.25 -2.88 7.10 -34.85 -0.25 -3.13 16 9 S 0.25 3.24 17.92 -107.50 -1.93 1.32 16 10 C -0.04 -0.38 6.81 -26.45 -0.18 -0.56 16 11 C -0.12 -0.84 7.11 -25.54 -0.18 -1.02 16 12 C -0.06 -0.48 6.81 -26.24 -0.18 -0.66 16 13 C 0.12 2.12 3.67 -65.67 -0.24 1.88 16 14 H 0.11 1.84 7.02 -51.93 -0.36 1.47 16 15 C -0.14 -2.35 6.48 -24.89 -0.16 -2.51 16 16 C 0.12 2.39 3.52 -3.06 -0.01 2.38 16 17 N -0.61 -13.89 1.85 -169.93 -0.31 -14.20 16 18 C -0.35 -9.34 9.93 -15.06 -0.15 -9.49 16 19 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 20 C -0.01 -0.16 5.43 -17.43 -0.09 -0.26 16 21 N -0.90 -27.06 13.70 55.49 0.76 -26.30 16 22 Si 1.03 24.47 25.09 -169.99 -4.27 20.20 16 23 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.06 5.08 56.52 0.29 -5.77 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.13 2.53 6.47 -2.41 -0.02 2.51 16 27 H 0.06 0.89 7.45 -51.93 -0.39 0.51 16 28 H 0.07 1.05 5.20 -28.38 -0.15 0.90 16 29 H 0.14 2.80 4.37 -51.93 -0.23 2.57 16 30 H 0.15 1.91 8.05 -52.49 -0.42 1.49 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.57 3.79 -51.93 -0.20 0.37 16 40 H 0.05 1.00 6.74 -51.93 -0.35 0.65 16 41 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -30.96 338.58 -9.51 -40.48 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.01 Total: 1.65 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.44 Total: -7.17 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.06 Total: -51.10 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.27 Total: 20.20 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.93 Total: 1.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.96 -9.51 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033638324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.404 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds