Wall clock time and date at job start Tue Mar 31 2020 12:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99866 * 2 1 4 4 O 1.21700 * 119.99616 * 186.34185 * 3 2 1 5 5 C 1.46580 * 120.00046 * 6.34340 * 3 2 1 6 6 C 1.35873 * 125.41625 * 187.46255 * 5 3 2 7 7 C 1.39165 * 113.99650 * 179.80354 * 6 5 3 8 8 C 1.34366 * 114.00197 * 0.46986 * 7 6 5 9 9 S 1.71477 * 111.07485 * 359.75645 * 8 7 6 10 10 C 1.52366 * 110.38911 * 179.77483 * 8 7 6 11 11 C 1.54168 * 104.90068 * 17.55805 * 10 8 7 12 12 C 1.52827 * 136.18594 * 180.11005 * 7 6 5 13 13 C 1.46500 * 120.00111 * 179.97438 * 2 1 3 14 14 H 1.09000 * 110.91859 * 176.09664 * 13 2 1 15 15 C 1.55152 * 111.00648 * 300.00114 * 13 2 1 16 16 C 1.54334 * 102.93965 * 82.56911 * 15 13 2 17 17 N 1.47022 * 107.27002 * 22.19647 * 16 15 13 18 18 C 1.36934 * 125.64505 * 181.02227 * 17 16 15 19 19 H 1.07997 * 119.99815 * 174.82945 * 18 17 16 20 20 C 1.38806 * 120.00212 * 354.82512 * 18 17 16 21 21 N 1.31625 * 120.00319 * 213.33393 * 20 18 17 22 22 Si 1.86801 * 119.99917 * 33.60836 * 20 18 17 23 23 H 1.48501 * 109.47280 * 174.14030 * 22 20 18 24 24 H 1.48497 * 109.47055 * 294.13706 * 22 20 18 25 25 H 1.48500 * 109.47205 * 54.13789 * 22 20 18 26 26 C 1.47423 * 108.70156 * 1.28626 * 17 16 15 27 27 H 1.08998 * 109.47214 * 275.85104 * 1 2 3 28 28 H 1.09005 * 109.47130 * 35.85193 * 1 2 3 29 29 H 1.09005 * 109.46916 * 155.84809 * 1 2 3 30 30 H 1.08000 * 122.99967 * 0.02562 * 6 5 3 31 31 H 1.09001 * 110.35661 * 136.40911 * 10 8 7 32 32 H 1.09004 * 110.35298 * 258.59876 * 10 8 7 33 33 H 1.08996 * 110.96080 * 91.40396 * 11 10 8 34 34 H 1.08998 * 110.95754 * 215.11020 * 11 10 8 35 35 H 1.09006 * 110.33093 * 43.82991 * 12 7 6 36 36 H 1.08993 * 110.33165 * 281.60351 * 12 7 6 37 37 H 1.08998 * 110.71957 * 324.21435 * 15 13 2 38 38 H 1.08999 * 110.87394 * 201.00366 * 15 13 2 39 39 H 1.08995 * 109.88039 * 262.77088 * 16 15 13 40 40 H 1.09000 * 110.00792 * 141.68398 * 16 15 13 41 41 H 0.96999 * 119.99349 * 5.28028 * 21 20 18 42 42 H 1.08996 * 110.36917 * 94.48769 * 26 17 16 43 43 H 1.09003 * 110.36144 * 216.80611 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3503 1.1704 -0.1164 5 6 1.4127 2.4328 0.1403 6 6 1.9567 3.6712 0.0120 7 6 1.0476 4.7099 0.1889 8 6 -0.2024 4.3011 0.4645 9 16 -0.2959 2.5895 0.5078 10 6 -1.1247 5.5000 0.6472 11 6 -0.3695 6.6823 0.0079 12 6 1.0982 6.2370 0.1579 13 6 2.1975 -1.2687 0.0006 14 1 3.2718 -1.0979 -0.0688 15 6 1.8484 -2.1119 1.2553 16 6 0.5310 -2.8061 0.8496 17 7 0.4793 -2.8197 -0.6196 18 6 -0.5404 -3.3304 -1.3776 19 1 -0.5235 -3.2181 -2.4515 20 6 -1.5958 -3.9925 -0.7655 21 7 -2.1871 -4.9961 -1.3782 22 14 -2.1818 -3.4542 0.9246 23 1 -3.3997 -4.2196 1.2932 24 1 -1.1140 -3.7117 1.9239 25 1 -2.4974 -2.0033 0.9001 26 6 1.7100 -2.1983 -1.1417 27 1 -0.3633 0.1048 1.0223 28 1 -0.3634 0.8330 -0.6019 29 1 -0.3633 -0.9378 -0.4205 30 1 3.0007 3.8348 -0.2111 31 1 -2.0711 5.3322 0.1330 32 1 -1.2978 5.6872 1.7070 33 1 -0.6378 6.7941 -1.0426 34 1 -0.5554 7.6058 0.5562 35 1 1.6866 6.5793 -0.6934 36 1 1.5174 6.6210 1.0879 37 1 1.6943 -1.4686 2.1216 38 1 2.6262 -2.8484 1.4570 39 1 -0.3184 -2.2495 1.2454 40 1 0.5149 -3.8272 1.2306 41 1 -1.8378 -5.3227 -2.2221 42 1 2.4577 -2.9611 -1.3585 43 1 1.4906 -1.6158 -2.0366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033638324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:39 Heat of formation + Delta-G solvation = 33.059809 kcal Electronic energy + Delta-G solvation = -25131.094442 eV Core-core repulsion = 21689.790690 eV Total energy + Delta-G solvation = -3441.303752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47858 -40.34452 -39.22150 -36.07301 -35.35984 -34.36895 -31.67533 -30.27732 -29.39979 -28.96177 -27.84358 -25.89564 -24.66151 -22.87060 -22.52780 -21.71538 -20.42234 -19.53282 -19.34714 -19.09282 -17.65879 -17.21179 -16.79756 -16.72221 -16.40558 -15.97018 -15.65120 -15.27687 -15.14072 -14.60957 -14.39723 -14.03051 -13.81965 -13.64399 -13.61401 -13.33066 -13.17350 -13.13726 -12.90154 -12.69132 -12.66723 -12.55421 -12.45087 -12.03424 -11.88907 -11.78630 -11.70951 -11.46008 -11.14530 -10.94133 -10.47636 -10.04104 -9.55002 -9.27746 -9.07286 -8.65884 -5.35172 -0.50518 0.37907 1.00229 1.26185 1.47546 1.53772 1.74316 1.78224 2.04233 2.60874 2.94468 3.28643 3.37225 3.58803 3.65253 3.70760 3.81334 4.02465 4.13473 4.17171 4.19220 4.32503 4.36820 4.38702 4.50207 4.65003 4.70708 4.78354 4.80877 4.81565 4.88011 4.90866 4.92565 4.97668 5.00614 5.15202 5.18103 5.27839 5.35825 5.41223 5.45881 5.60906 6.09427 6.20499 6.82848 6.90309 7.47775 8.14133 8.82598 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.003944 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.136831 B = 7097.607674 C = 8021.545256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.589 5.589 3 C 0.589 3.411 4 O -0.571 6.571 5 C -0.299 4.299 6 C -0.038 4.038 7 C -0.159 4.159 8 C -0.243 4.243 9 S 0.256 5.744 10 C -0.048 4.048 11 C -0.112 4.112 12 C -0.057 4.057 13 C 0.131 3.869 14 H 0.117 0.883 15 C -0.127 4.127 16 C 0.110 3.890 17 N -0.619 5.619 18 C -0.331 4.331 19 H 0.047 0.953 20 C -0.059 4.059 21 N -0.941 5.941 22 Si 1.065 2.935 23 H -0.314 1.314 24 H -0.243 1.243 25 H -0.269 1.269 26 C 0.128 3.872 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.251 0.749 42 H 0.048 0.952 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 23.906 7.831 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.319 5.319 3 C 0.379 3.621 4 O -0.453 6.453 5 C -0.418 4.418 6 C -0.072 4.072 7 C -0.171 4.171 8 C -0.362 4.362 9 S 0.528 5.472 10 C -0.087 4.087 11 C -0.151 4.151 12 C -0.096 4.096 13 C 0.027 3.973 14 H 0.135 0.865 15 C -0.165 4.165 16 C -0.014 4.014 17 N -0.347 5.347 18 C -0.459 4.459 19 H 0.065 0.935 20 C -0.256 4.256 21 N -0.582 5.582 22 Si 0.891 3.109 23 H -0.243 1.243 24 H -0.168 1.168 25 H -0.195 1.195 26 C 0.002 3.998 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.163 0.837 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.558 22.530 9.124 24.442 hybrid contribution 2.118 0.521 -2.199 3.097 sum 4.676 23.051 6.925 24.519 Atomic orbital electron populations 1.22439 0.79016 1.05673 1.02950 1.47544 1.07304 1.05203 1.71862 1.17247 0.86253 0.82740 0.75820 1.90749 1.14399 1.87305 1.52832 1.24072 0.99760 0.96840 1.21171 1.20313 1.01008 0.89501 0.96375 1.20669 0.92224 0.98282 1.05909 1.26866 1.01850 1.02214 1.05243 1.83667 1.02676 0.95829 1.65023 1.21060 0.96656 0.88158 1.02814 1.22324 0.92878 0.97852 1.02014 1.21109 0.98628 0.86537 1.03282 1.22268 0.97104 0.81937 0.96017 0.86516 1.22966 0.97326 0.99007 0.97227 1.22083 0.96863 0.98159 0.84264 1.44877 1.17748 1.70805 1.01314 1.19738 1.02912 1.32995 0.90221 0.93483 1.26775 0.97150 0.93928 1.07728 1.71032 1.47606 1.21395 1.18205 0.84117 0.75798 0.76610 0.74360 1.24270 1.16781 1.19475 1.22029 0.88698 0.93801 0.95281 0.90866 0.90343 0.87361 0.83742 0.89620 0.88416 0.90465 0.87676 0.90188 0.89292 0.89066 0.87856 0.95148 0.94861 0.94004 0.93471 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 7.18 127.77 0.92 2.34 16 2 N -0.59 -19.57 2.91 -819.20 -2.39 -21.96 16 3 C 0.59 19.98 7.62 86.42 0.66 20.64 16 4 O -0.57 -22.05 16.24 -4.35 -0.07 -22.13 16 5 C -0.30 -8.65 6.15 23.90 0.15 -8.50 16 6 C -0.04 -0.98 10.00 21.94 0.22 -0.76 16 7 C -0.16 -3.37 6.49 -19.84 -0.13 -3.50 16 8 C -0.24 -4.93 7.10 25.34 0.18 -4.75 16 9 S 0.26 6.07 17.92 -56.49 -1.01 5.06 16 10 C -0.05 -0.62 6.81 30.78 0.21 -0.42 16 11 C -0.11 -1.12 7.11 31.37 0.22 -0.90 16 12 C -0.06 -0.78 6.81 30.91 0.21 -0.56 16 13 C 0.13 4.35 3.67 46.46 0.17 4.52 16 14 H 0.12 3.76 7.02 -2.39 -0.02 3.75 16 15 C -0.13 -3.87 6.48 31.78 0.21 -3.66 16 16 C 0.11 4.33 3.52 86.73 0.31 4.64 16 17 N -0.62 -28.28 1.85 -691.55 -1.28 -29.55 16 18 C -0.33 -18.29 9.93 84.03 0.83 -17.45 16 19 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 20 C -0.06 -3.39 5.43 84.86 0.46 -2.93 16 21 N -0.94 -58.67 13.70 21.65 0.30 -58.38 16 22 Si 1.07 49.04 25.09 68.60 1.72 50.76 16 23 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 24 H -0.24 -9.85 5.08 99.48 0.50 -9.34 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C 0.13 5.01 6.47 86.93 0.56 5.58 16 27 H 0.07 2.11 7.45 -2.39 -0.02 2.09 16 28 H 0.08 2.35 5.20 -17.36 -0.09 2.26 16 29 H 0.11 4.28 4.37 -2.38 -0.01 4.27 16 30 H 0.14 3.70 8.05 -2.91 -0.02 3.67 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.03 1.20 3.79 -2.39 -0.01 1.19 16 40 H 0.03 1.40 6.74 -2.39 -0.02 1.39 16 41 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.34 338.58 3.15 -66.19 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.71 Total: 15.73 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.18 Total: -5.72 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -3.37 Total: -109.89 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.07 Total: -22.13 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.72 Total: 50.76 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.01 Total: 5.06 kcal Total: -69.34 3.15 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033638324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.248 kcal (2) G-P(sol) polarization free energy of solvation -69.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds