Wall clock time and date at job start Tue Mar 31 2020 12:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00239 * 2 1 4 4 C 1.52997 * 109.46990 * 276.31861 * 3 2 1 5 5 H 1.09000 * 112.96833 * 48.64856 * 4 3 2 6 6 C 1.53944 * 113.77304 * 180.33027 * 4 3 2 7 7 C 1.53943 * 86.29202 * 137.90601 * 6 4 3 8 8 N 1.47572 * 86.11872 * 336.39415 * 7 6 4 9 9 C 1.36939 * 134.49549 * 204.64471 * 8 7 6 10 10 H 1.07999 * 120.00177 * 187.82291 * 9 8 7 11 11 C 1.38815 * 119.99429 * 7.81393 * 9 8 7 12 12 N 1.31614 * 120.00397 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99567 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47257 * 60.00711 * 13 11 9 15 15 H 1.48503 * 109.46616 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47089 * 299.99975 * 13 11 9 17 17 C 1.34776 * 120.00150 * 179.97438 * 2 1 3 18 18 O 1.21701 * 120.00440 * 187.04931 * 17 2 1 19 19 C 1.46588 * 119.99663 * 7.05094 * 17 2 1 20 20 S 1.75827 * 125.45866 * 7.72459 * 19 17 2 21 21 C 1.70622 * 91.56486 * 179.91439 * 20 19 17 22 22 C 1.33818 * 110.95215 * 0.34918 * 21 20 19 23 23 C 1.36647 * 125.45897 * 188.02799 * 19 17 2 24 24 C 1.50700 * 123.34933 * 0.02562 * 23 19 17 25 25 C 1.53001 * 117.50041 * 188.61968 * 24 23 19 26 26 C 1.52997 * 60.00452 * 252.51246 * 25 24 23 27 27 H 1.09001 * 109.47253 * 95.92708 * 1 2 3 28 28 H 1.08996 * 109.47357 * 215.92853 * 1 2 3 29 29 H 1.09000 * 109.46959 * 335.92862 * 1 2 3 30 30 H 1.08999 * 109.47161 * 36.31371 * 3 2 1 31 31 H 1.09003 * 109.47052 * 156.31678 * 3 2 1 32 32 H 1.09006 * 113.73916 * 252.25657 * 6 4 3 33 33 H 1.09002 * 113.74085 * 23.45263 * 6 4 3 34 34 H 1.09001 * 113.76878 * 90.69780 * 7 6 4 35 35 H 1.09008 * 113.76692 * 221.97700 * 7 6 4 36 36 H 0.97002 * 120.00216 * 180.02562 * 12 11 9 37 37 H 1.07998 * 124.52530 * 180.02562 * 21 20 19 38 38 H 1.07992 * 122.45095 * 179.70209 * 22 21 20 39 39 H 1.08996 * 115.55472 * 334.32998 * 24 23 19 40 40 H 1.09004 * 117.49713 * 0.02562 * 25 24 23 41 41 H 1.09004 * 117.50283 * 145.01794 * 25 24 23 42 42 H 1.09000 * 117.49500 * 252.51002 * 26 25 24 43 43 H 1.08991 * 117.51473 * 107.47607 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3150 1.7897 -1.4337 5 1 1.3656 1.7798 -1.9690 6 6 3.0786 3.1214 -1.5494 7 6 3.7592 2.5086 -2.7868 8 7 3.4343 1.1977 -2.1920 9 6 3.9601 -0.0621 -2.3000 10 1 3.4532 -0.8997 -1.8442 11 6 5.1447 -0.2623 -2.9955 12 7 5.7626 0.7585 -3.5506 13 14 5.8617 -1.9810 -3.1434 14 1 4.8878 -2.8661 -3.8314 15 1 7.1213 -1.9258 -3.9281 16 1 6.1463 -2.5169 -1.7880 17 6 2.1388 -1.1672 0.0005 18 8 3.3490 -1.1712 0.1299 19 6 1.4142 -2.4319 -0.1548 20 16 -0.2940 -2.5879 -0.5413 21 6 -0.1937 -4.2909 -0.5088 22 6 1.0492 -4.6916 -0.2168 23 6 1.9566 -3.6785 -0.0166 24 6 3.4053 -3.9187 0.3221 25 6 3.9192 -5.3578 0.2468 26 6 3.7118 -4.6900 1.6076 27 1 -0.3634 -0.1061 -1.0222 28 1 -0.3634 -0.8321 0.6030 29 1 -0.3633 0.9383 0.4192 30 1 1.6621 1.9974 0.6086 31 1 3.1942 1.1128 0.4128 32 1 2.4401 3.9750 -1.7773 33 1 3.7601 3.3101 -0.7199 34 1 3.2349 2.7092 -3.7211 35 1 4.8283 2.7131 -2.8466 36 1 6.5901 0.6185 -4.0369 37 1 -1.0238 -4.9566 -0.6936 38 1 1.3196 -5.7345 -0.1433 39 1 4.0931 -3.1228 0.0367 40 1 3.2095 -6.1309 -0.0482 41 1 4.9453 -5.5090 -0.0886 42 1 4.6014 -4.4017 2.1675 43 1 2.8656 -5.0233 2.2083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085958996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:56 Heat of formation + Delta-G solvation = 101.099613 kcal Electronic energy + Delta-G solvation = -25925.559060 eV Core-core repulsion = 22487.205735 eV Total energy + Delta-G solvation = -3438.353325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79888 -38.58172 -37.39901 -35.44922 -34.98992 -31.95268 -30.22166 -28.24389 -27.66020 -26.50338 -24.75182 -23.15368 -22.60075 -22.13546 -21.89944 -20.14177 -18.94865 -17.78314 -17.76437 -16.74095 -16.25123 -15.62707 -15.32142 -15.02255 -14.57489 -14.48756 -13.78620 -13.67855 -13.61882 -13.13173 -13.08621 -12.81861 -12.61348 -12.42564 -12.08567 -11.62267 -11.44113 -11.35370 -11.29693 -10.97226 -10.79624 -10.59778 -10.47512 -10.43811 -10.41374 -10.15316 -9.86404 -9.57214 -9.30808 -9.07001 -8.59959 -8.48852 -8.29060 -7.97054 -6.63540 -5.51580 -2.82254 0.71662 1.65510 2.06073 2.51474 3.36217 3.56653 3.58295 3.64256 3.66798 4.18857 4.64426 4.81026 4.87739 4.99883 5.12667 5.13153 5.26215 5.27867 5.41143 5.44058 5.63321 5.64701 5.67266 5.72912 5.76120 5.88186 5.94014 6.01267 6.06431 6.13236 6.24798 6.26402 6.40032 6.44958 6.47494 6.74696 6.76572 6.84940 7.00412 7.40991 7.58928 7.79096 7.86391 8.25950 8.72730 9.32334 9.97805 10.81711 11.64888 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.006622 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.107097 B = 4227.007270 C = 5818.082046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.611 5.611 3 C 0.119 3.881 4 C 0.123 3.877 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.149 3.851 8 N -0.595 5.595 9 C -0.194 4.194 10 H 0.091 0.909 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.900 3.100 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.280 1.280 17 C 0.581 3.419 18 O -0.481 6.481 19 C -0.249 4.249 20 S 0.207 5.793 21 C -0.263 4.263 22 C -0.144 4.144 23 C 0.001 3.999 24 C -0.103 4.103 25 C -0.179 4.179 26 C -0.164 4.164 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.019 0.981 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.161 0.839 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 -5.528 9.761 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.345 5.345 3 C -0.005 4.005 4 C 0.015 3.985 5 H 0.059 0.941 6 C -0.196 4.196 7 C 0.024 3.976 8 N -0.321 5.321 9 C -0.321 4.321 10 H 0.108 0.892 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.732 3.268 14 H -0.216 1.216 15 H -0.221 1.221 16 H -0.207 1.207 17 C 0.368 3.632 18 O -0.355 6.355 19 C -0.369 4.369 20 S 0.477 5.523 21 C -0.399 4.399 22 C -0.175 4.175 23 C -0.013 4.013 24 C -0.123 4.123 25 C -0.216 4.216 26 C -0.202 4.202 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.178 0.822 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.614 -4.774 9.437 18.040 hybrid contribution 1.202 -2.222 -0.248 2.539 sum -13.412 -6.996 9.189 17.700 Atomic orbital electron populations 1.21870 0.81169 1.02796 1.02108 1.47491 1.05768 1.06449 1.74797 1.21979 0.97926 0.82435 0.98115 1.22671 0.92714 0.91620 0.91513 0.94126 1.23779 0.99378 0.95097 1.01326 1.22308 1.00221 0.83747 0.91312 1.46017 1.31253 1.05445 1.49374 1.19344 1.02462 0.83442 1.26897 0.89176 1.24693 0.97593 0.96941 1.01573 1.69804 1.18859 1.28504 1.40682 0.86333 0.78139 0.84638 0.77719 1.21637 1.22093 1.20650 1.16758 0.86716 0.81723 0.77993 1.90870 1.12395 1.85615 1.46658 1.24546 0.97694 0.97784 1.16899 1.83327 1.05613 0.97981 1.65393 1.25576 1.01833 1.03423 1.09094 1.19784 0.92194 1.00462 1.05042 1.18626 0.95029 0.90572 0.97100 1.21125 0.92846 0.96499 1.01840 1.23018 1.02420 0.95373 1.00806 1.22908 1.03074 1.03732 0.90484 0.92191 0.91081 0.89673 0.91540 0.88565 0.93304 0.90700 0.96291 0.90141 0.94186 0.82164 0.84582 0.83893 0.88867 0.88476 0.88455 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 8.85 59.84 0.53 1.33 16 2 N -0.61 -10.49 2.88 -183.17 -0.53 -11.02 16 3 C 0.12 2.12 5.42 -4.04 -0.02 2.10 16 4 C 0.12 2.49 4.54 -66.86 -0.30 2.19 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -2.98 7.86 -25.81 -0.20 -3.18 16 7 C 0.15 3.63 7.72 -2.98 -0.02 3.61 16 8 N -0.60 -15.57 3.57 -170.77 -0.61 -16.18 16 9 C -0.19 -5.66 9.40 -15.06 -0.14 -5.80 16 10 H 0.09 2.63 4.30 -52.49 -0.23 2.41 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.09 11.27 55.49 0.63 -28.47 16 13 Si 0.90 24.35 29.55 -169.99 -5.02 19.33 16 14 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 15 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 16 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 17 C 0.58 11.58 6.09 -12.89 -0.08 11.50 16 18 O -0.48 -11.43 11.10 5.19 0.06 -11.38 16 19 C -0.25 -4.30 6.18 -36.79 -0.23 -4.53 16 20 S 0.21 2.61 17.93 -107.50 -1.93 0.68 16 21 C -0.26 -3.15 10.92 29.18 0.32 -2.83 16 22 C -0.14 -1.96 9.46 -41.41 -0.39 -2.36 16 23 C 0.00 0.02 5.60 -105.48 -0.59 -0.57 16 24 C -0.10 -1.80 5.52 -91.77 -0.51 -2.31 16 25 C -0.18 -2.52 9.95 -26.73 -0.27 -2.79 16 26 C -0.16 -2.28 10.21 -26.73 -0.27 -2.55 16 27 H 0.06 0.73 7.42 -51.93 -0.39 0.34 16 28 H 0.07 0.78 5.28 -29.39 -0.16 0.62 16 29 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 30 H 0.07 0.92 7.96 -51.93 -0.41 0.51 16 31 H 0.10 2.04 7.17 -51.93 -0.37 1.67 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 2.18 6.84 -51.92 -0.36 1.83 16 36 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.14 1.58 6.61 -52.49 -0.35 1.24 16 39 H 0.14 3.08 6.06 -51.93 -0.31 2.77 16 40 H 0.09 1.13 6.56 -51.93 -0.34 0.79 16 41 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -35.09 350.25 -10.23 -45.32 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.83 Total: 3.13 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.27 Total: -6.70 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.51 Total: -55.66 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.06 Total: -11.38 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.02 Total: 19.33 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.93 Total: 0.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.09 -10.23 -45.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085958996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.420 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds