Wall clock time and date at job start Tue Mar 31 2020 12:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00239 * 2 1 4 4 C 1.52997 * 109.46990 * 276.31861 * 3 2 1 5 5 H 1.09000 * 112.96833 * 48.64856 * 4 3 2 6 6 C 1.53944 * 113.77304 * 180.33027 * 4 3 2 7 7 C 1.53943 * 86.29202 * 137.90601 * 6 4 3 8 8 N 1.47572 * 86.11872 * 336.39415 * 7 6 4 9 9 C 1.36939 * 134.49549 * 204.64471 * 8 7 6 10 10 H 1.07999 * 120.00177 * 187.82291 * 9 8 7 11 11 C 1.38815 * 119.99429 * 7.81393 * 9 8 7 12 12 N 1.31614 * 120.00397 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99567 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47257 * 60.00711 * 13 11 9 15 15 H 1.48503 * 109.46616 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47089 * 299.99975 * 13 11 9 17 17 C 1.34776 * 120.00150 * 179.97438 * 2 1 3 18 18 O 1.21701 * 120.00440 * 187.04931 * 17 2 1 19 19 C 1.46588 * 119.99663 * 7.05094 * 17 2 1 20 20 S 1.75827 * 125.45866 * 7.72459 * 19 17 2 21 21 C 1.70622 * 91.56486 * 179.91439 * 20 19 17 22 22 C 1.33818 * 110.95215 * 0.34918 * 21 20 19 23 23 C 1.36647 * 125.45897 * 188.02799 * 19 17 2 24 24 C 1.50700 * 123.34933 * 0.02562 * 23 19 17 25 25 C 1.53001 * 117.50041 * 188.61968 * 24 23 19 26 26 C 1.52997 * 60.00452 * 252.51246 * 25 24 23 27 27 H 1.09001 * 109.47253 * 95.92708 * 1 2 3 28 28 H 1.08996 * 109.47357 * 215.92853 * 1 2 3 29 29 H 1.09000 * 109.46959 * 335.92862 * 1 2 3 30 30 H 1.08999 * 109.47161 * 36.31371 * 3 2 1 31 31 H 1.09003 * 109.47052 * 156.31678 * 3 2 1 32 32 H 1.09006 * 113.73916 * 252.25657 * 6 4 3 33 33 H 1.09002 * 113.74085 * 23.45263 * 6 4 3 34 34 H 1.09001 * 113.76878 * 90.69780 * 7 6 4 35 35 H 1.09008 * 113.76692 * 221.97700 * 7 6 4 36 36 H 0.97002 * 120.00216 * 180.02562 * 12 11 9 37 37 H 1.07998 * 124.52530 * 180.02562 * 21 20 19 38 38 H 1.07992 * 122.45095 * 179.70209 * 22 21 20 39 39 H 1.08996 * 115.55472 * 334.32998 * 24 23 19 40 40 H 1.09004 * 117.49713 * 0.02562 * 25 24 23 41 41 H 1.09004 * 117.50283 * 145.01794 * 25 24 23 42 42 H 1.09000 * 117.49500 * 252.51002 * 26 25 24 43 43 H 1.08991 * 117.51473 * 107.47607 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3150 1.7897 -1.4337 5 1 1.3656 1.7798 -1.9690 6 6 3.0786 3.1214 -1.5494 7 6 3.7592 2.5086 -2.7868 8 7 3.4343 1.1977 -2.1920 9 6 3.9601 -0.0621 -2.3000 10 1 3.4532 -0.8997 -1.8442 11 6 5.1447 -0.2623 -2.9955 12 7 5.7626 0.7585 -3.5506 13 14 5.8617 -1.9810 -3.1434 14 1 4.8878 -2.8661 -3.8314 15 1 7.1213 -1.9258 -3.9281 16 1 6.1463 -2.5169 -1.7880 17 6 2.1388 -1.1672 0.0005 18 8 3.3490 -1.1712 0.1299 19 6 1.4142 -2.4319 -0.1548 20 16 -0.2940 -2.5879 -0.5413 21 6 -0.1937 -4.2909 -0.5088 22 6 1.0492 -4.6916 -0.2168 23 6 1.9566 -3.6785 -0.0166 24 6 3.4053 -3.9187 0.3221 25 6 3.9192 -5.3578 0.2468 26 6 3.7118 -4.6900 1.6076 27 1 -0.3634 -0.1061 -1.0222 28 1 -0.3634 -0.8321 0.6030 29 1 -0.3633 0.9383 0.4192 30 1 1.6621 1.9974 0.6086 31 1 3.1942 1.1128 0.4128 32 1 2.4401 3.9750 -1.7773 33 1 3.7601 3.3101 -0.7199 34 1 3.2349 2.7092 -3.7211 35 1 4.8283 2.7131 -2.8466 36 1 6.5901 0.6185 -4.0369 37 1 -1.0238 -4.9566 -0.6936 38 1 1.3196 -5.7345 -0.1433 39 1 4.0931 -3.1228 0.0367 40 1 3.2095 -6.1309 -0.0482 41 1 4.9453 -5.5090 -0.0886 42 1 4.6014 -4.4017 2.1675 43 1 2.8656 -5.0233 2.2083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085958996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:55 Heat of formation + Delta-G solvation = 78.619268 kcal Electronic energy + Delta-G solvation = -25926.533881 eV Core-core repulsion = 22487.205735 eV Total energy + Delta-G solvation = -3439.328146 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15857 -39.91228 -39.02102 -36.56343 -36.41323 -34.12799 -31.47190 -29.82581 -29.44944 -27.68896 -26.01424 -25.21017 -24.01174 -23.36279 -23.02791 -21.46458 -20.77429 -19.04968 -18.93465 -18.70346 -17.44921 -17.04119 -16.83388 -16.43746 -16.24368 -15.77299 -15.64906 -15.25077 -14.72607 -14.63001 -14.25144 -14.19582 -13.95851 -13.63038 -13.40854 -13.20453 -13.00684 -12.96336 -12.78560 -12.61702 -12.45309 -12.42001 -12.34796 -11.79432 -11.59031 -11.52807 -11.42275 -11.30636 -11.21765 -10.78753 -10.57000 -9.74072 -9.55814 -9.10994 -8.72445 -7.79439 -5.08191 -0.40629 0.57320 1.05097 1.31328 1.36241 1.42528 1.44210 2.08302 2.31024 2.50672 3.00997 3.38044 3.44763 3.64659 3.81289 3.88813 4.00850 4.06162 4.17801 4.19740 4.30596 4.38995 4.43710 4.50861 4.58363 4.62125 4.68601 4.76223 4.80007 4.84302 4.94745 5.06047 5.09399 5.10064 5.16570 5.17243 5.37042 5.43992 5.53321 5.64425 5.74466 5.83848 6.09691 6.48277 7.08023 7.34497 7.76103 8.67435 9.36923 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.006622 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.107097 B = 4227.007270 C = 5818.082046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.613 5.613 3 C 0.124 3.876 4 C 0.125 3.875 5 H 0.061 0.939 6 C -0.125 4.125 7 C 0.137 3.863 8 N -0.628 5.628 9 C -0.175 4.175 10 H 0.087 0.913 11 C -0.080 4.080 12 N -0.961 5.961 13 Si 0.947 3.053 14 H -0.286 1.286 15 H -0.294 1.294 16 H -0.288 1.288 17 C 0.571 3.429 18 O -0.541 6.541 19 C -0.307 4.307 20 S 0.273 5.727 21 C -0.244 4.244 22 C -0.162 4.162 23 C -0.005 4.005 24 C -0.142 4.142 25 C -0.165 4.165 26 C -0.145 4.145 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.017 0.983 35 H 0.042 0.958 36 H 0.239 0.761 37 H 0.200 0.800 38 H 0.158 0.842 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.742 -6.363 10.919 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.346 5.346 3 C 0.001 3.999 4 C 0.019 3.981 5 H 0.078 0.922 6 C -0.164 4.164 7 C 0.012 3.988 8 N -0.354 5.354 9 C -0.305 4.305 10 H 0.104 0.896 11 C -0.270 4.270 12 N -0.614 5.614 13 Si 0.779 3.221 14 H -0.213 1.213 15 H -0.220 1.220 16 H -0.216 1.216 17 C 0.360 3.640 18 O -0.420 6.420 19 C -0.427 4.427 20 S 0.543 5.457 21 C -0.381 4.381 22 C -0.192 4.192 23 C -0.020 4.020 24 C -0.162 4.162 25 C -0.202 4.202 26 C -0.183 4.183 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.217 0.783 38 H 0.175 0.825 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.142 -5.587 10.615 22.590 hybrid contribution 2.403 -1.953 -0.534 3.143 sum -16.739 -7.541 10.080 20.945 Atomic orbital electron populations 1.22210 0.77882 1.05464 1.02985 1.47641 1.07868 1.05362 1.73732 1.21809 0.97146 0.84031 0.96920 1.22931 0.91740 0.91299 0.92145 0.92191 1.23501 0.98803 0.95971 0.98086 1.22318 0.98590 0.84248 0.93693 1.46420 1.33419 1.04893 1.50667 1.19574 1.01747 0.85033 1.24096 0.89560 1.25300 0.98906 0.99450 1.03393 1.69968 1.19174 1.29501 1.42708 0.85562 0.77537 0.82021 0.76990 1.21255 1.22048 1.21556 1.17340 0.86452 0.83351 0.76883 1.90839 1.14980 1.86712 1.49426 1.24547 1.01089 0.96809 1.20244 1.82905 1.01049 0.98117 1.63666 1.26121 1.02228 1.03932 1.05804 1.19890 0.92253 1.00768 1.06327 1.18862 0.94884 0.91578 0.96691 1.20933 0.93223 0.96726 1.05332 1.23130 1.02642 0.93881 1.00567 1.22967 1.03590 1.01751 0.89971 0.91756 0.89809 0.85980 0.86323 0.92768 0.88579 0.90584 0.96510 0.93980 0.95212 0.78275 0.82482 0.89236 0.86171 0.89005 0.88687 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.20 8.85 127.77 1.13 2.33 16 2 N -0.61 -20.29 2.88 -851.63 -2.45 -22.73 16 3 C 0.12 4.26 5.42 86.38 0.47 4.73 16 4 C 0.13 4.86 4.54 45.09 0.20 5.07 16 5 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 6 C -0.13 -4.50 7.86 31.25 0.25 -4.25 16 7 C 0.14 6.77 7.72 86.48 0.67 7.43 16 8 N -0.63 -33.54 3.57 -694.19 -2.48 -36.01 16 9 C -0.18 -10.68 9.40 84.03 0.79 -9.89 16 10 H 0.09 5.30 4.30 -2.91 -0.01 5.29 16 11 C -0.08 -5.10 5.50 84.86 0.47 -4.64 16 12 N -0.96 -63.46 11.27 21.65 0.24 -63.21 16 13 Si 0.95 53.15 29.55 68.60 2.03 55.17 16 14 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 15 H -0.29 -16.23 7.11 99.48 0.71 -15.53 16 16 H -0.29 -16.30 7.11 99.48 0.71 -15.60 16 17 C 0.57 23.26 6.09 86.42 0.53 23.79 16 18 O -0.54 -27.52 11.10 -4.35 -0.05 -27.57 16 19 C -0.31 -10.48 6.18 24.08 0.15 -10.33 16 20 S 0.27 5.94 17.93 -56.49 -1.01 4.93 16 21 C -0.24 -4.78 10.92 66.81 0.73 -4.05 16 22 C -0.16 -3.98 9.46 21.08 0.20 -3.78 16 23 C 0.00 -0.15 5.60 -20.42 -0.11 -0.27 16 24 C -0.14 -5.15 5.52 -11.54 -0.06 -5.21 16 25 C -0.17 -4.59 9.95 30.59 0.30 -4.29 16 26 C -0.15 -4.00 10.21 30.60 0.31 -3.69 16 27 H 0.06 1.31 7.42 -2.39 -0.02 1.29 16 28 H 0.08 1.53 5.28 -16.72 -0.09 1.44 16 29 H 0.12 1.64 7.90 -2.39 -0.02 1.62 16 30 H 0.12 2.81 7.96 -2.39 -0.02 2.79 16 31 H 0.05 2.35 7.17 -2.39 -0.02 2.33 16 32 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 2.39 6.84 -2.38 -0.02 2.38 16 36 H 0.24 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.20 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.16 3.07 6.61 -2.91 -0.02 3.05 16 39 H 0.09 4.26 6.06 -2.39 -0.01 4.24 16 40 H 0.12 2.64 6.56 -2.38 -0.02 2.62 16 41 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -85.57 350.25 3.25 -82.32 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.95 Total: 14.16 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.02 Total: -7.05 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.68 Total: -121.96 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.03 Total: 55.17 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -1.01 Total: 4.93 kcal Total: -85.57 3.25 -82.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085958996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.940 kcal (2) G-P(sol) polarization free energy of solvation -85.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds