Wall clock time and date at job start Tue Mar 31 2020 12:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35972 * 116.99589 * 2 1 4 4 C 1.38716 * 119.99104 * 359.72793 * 3 2 1 5 5 C 1.38095 * 120.01697 * 179.72371 * 4 3 2 6 6 C 1.38841 * 119.98334 * 0.55134 * 5 4 3 7 7 N 1.40100 * 120.01770 * 179.70041 * 6 5 4 8 8 C 1.34779 * 119.99980 * 314.77272 * 7 6 5 9 9 S 1.71196 * 119.99704 * 4.30524 * 8 7 6 10 10 N 1.34770 * 119.99837 * 184.30512 * 8 7 6 11 11 C 1.46500 * 119.99887 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.41161 * 324.85855 * 11 10 8 13 13 C 1.52958 * 109.41132 * 84.64522 * 11 10 8 14 14 C 1.53233 * 109.40178 * 183.70345 * 13 11 10 15 15 C 1.51268 * 108.54199 * 305.37544 * 14 13 11 16 16 C 1.37874 * 120.85306 * 231.32962 * 15 14 13 17 17 N 1.31523 * 119.99674 * 10.01710 * 16 15 14 18 18 Si 1.86796 * 120.00109 * 190.02274 * 16 15 14 19 19 H 1.48502 * 109.47292 * 356.45399 * 18 16 15 20 20 H 1.48503 * 109.47231 * 116.45620 * 18 16 15 21 21 H 1.48507 * 109.46966 * 236.45385 * 18 16 15 22 22 C 1.51266 * 118.29678 * 51.34437 * 15 14 13 23 23 C 1.52953 * 109.41582 * 204.99888 * 11 10 8 24 24 C 1.38850 * 119.97014 * 359.71919 * 6 5 4 25 25 C 1.38092 * 119.98607 * 0.02562 * 24 6 5 26 26 H 1.08999 * 109.46994 * 299.99737 * 1 2 3 27 27 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47146 * 60.00082 * 1 2 3 29 29 H 1.07997 * 119.98833 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.00468 * 180.28971 * 5 4 3 31 31 H 0.96999 * 119.99762 * 134.76740 * 7 6 5 32 32 H 0.97002 * 120.00203 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.48480 * 303.68180 * 13 11 10 34 34 H 1.08996 * 109.48281 * 63.73351 * 13 11 10 35 35 H 1.09002 * 109.63003 * 185.65794 * 14 13 11 36 36 H 1.08998 * 109.62543 * 65.09154 * 14 13 11 37 37 H 0.96994 * 119.99454 * 180.02562 * 17 16 15 38 38 H 1.09006 * 109.62773 * 188.94582 * 22 15 14 39 39 H 1.08993 * 109.62893 * 68.37358 * 22 15 14 40 40 H 1.09004 * 109.48485 * 296.27984 * 23 11 10 41 41 H 1.09006 * 109.48336 * 56.30039 * 23 11 10 42 42 H 1.08001 * 120.00915 * 180.02562 * 24 6 5 43 43 H 1.07997 * 119.99794 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3748 -0.0057 5 6 1.9168 3.6055 0.0001 6 6 3.3033 3.6786 0.0000 7 7 3.9394 4.9268 -0.0005 8 6 3.5129 5.9002 -0.8295 9 16 2.1264 5.6496 -1.8020 10 7 4.1779 7.0707 -0.8928 11 6 3.7146 8.1285 -1.7943 12 1 3.3096 7.6798 -2.7014 13 6 2.6225 8.9449 -1.1012 14 6 2.0734 9.9918 -2.0762 15 6 3.2297 10.8149 -2.5995 16 6 3.1939 12.1925 -2.5555 17 7 2.2445 12.8045 -1.8817 18 14 4.4937 13.1897 -3.4530 19 1 5.4911 12.2714 -4.0591 20 1 3.8493 13.9954 -4.5212 21 1 5.1739 14.0950 -2.4923 22 6 4.4260 10.0879 -3.1725 23 6 4.8897 9.0375 -2.1578 24 6 4.0592 2.5139 0.0000 25 6 3.4317 1.2838 -0.0004 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 0.2121 2.3178 -0.0097 30 1 1.3281 4.5110 0.0003 31 1 4.6867 5.0905 0.5958 32 1 4.9632 7.2128 -0.3415 33 1 1.8162 8.2816 -0.7881 34 1 3.0414 9.4455 -0.2284 35 1 1.3674 10.6404 -1.5576 36 1 1.5741 9.4925 -2.9066 37 1 2.2192 13.7736 -1.8511 38 1 5.2317 10.7982 -3.3582 39 1 4.1446 9.5975 -4.1043 40 1 5.2552 9.5359 -1.2598 41 1 5.6906 8.4399 -2.5932 42 1 5.1377 2.5699 0.0004 43 1 4.0194 0.3778 -0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195717846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:36 Heat of formation + Delta-G solvation = 4.228758 kcal Electronic energy + Delta-G solvation = -23989.272517 eV Core-core repulsion = 20546.718557 eV Total energy + Delta-G solvation = -3442.553960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.47916 -39.30176 -37.97414 -36.17855 -34.05441 -31.79364 -31.22415 -29.71758 -29.31071 -27.62993 -26.87551 -24.33031 -22.64306 -22.45864 -21.78784 -21.43523 -19.72715 -18.55604 -18.22859 -17.73687 -16.24139 -16.13008 -15.88225 -15.82885 -14.93936 -14.59858 -14.45209 -14.40911 -13.79668 -13.50618 -13.26975 -13.01427 -12.85413 -12.69842 -12.36111 -12.18627 -12.01180 -11.73975 -11.41872 -11.05424 -11.01674 -10.92260 -10.83766 -10.77331 -10.29736 -9.97962 -9.57780 -9.46235 -9.14061 -8.93209 -8.69967 -8.44662 -8.04522 -7.49258 -6.78317 -6.14047 -4.03312 1.02493 1.32175 1.71928 2.13408 2.71817 3.11738 3.22215 3.31571 3.33183 3.60112 3.70094 4.34120 4.70050 4.77397 4.93298 4.96972 5.11286 5.13897 5.26721 5.27632 5.37256 5.49495 5.68053 5.74252 5.91141 6.05055 6.12618 6.22369 6.34805 6.37939 6.44305 6.52681 6.57292 6.69989 6.80595 6.94693 7.00574 7.07263 7.21610 7.27376 7.35836 7.43418 7.62299 7.77927 7.85179 8.36566 8.94569 9.50658 10.95045 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.002577 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.117360 B =10861.253503 C =11313.382638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.128 3.872 4 C -0.202 4.202 5 C -0.025 4.025 6 C 0.093 3.907 7 N -0.642 5.642 8 C 0.556 3.444 9 S -0.626 6.626 10 N -0.665 5.665 11 C 0.148 3.852 12 H 0.109 0.891 13 C -0.110 4.110 14 C 0.015 3.985 15 C -0.492 4.492 16 C 0.078 3.922 17 N -0.884 5.884 18 Si 0.878 3.122 19 H -0.257 1.257 20 H -0.283 1.283 21 H -0.286 1.286 22 C -0.018 4.018 23 C -0.113 4.113 24 C -0.086 4.086 25 C -0.153 4.153 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.153 0.847 31 H 0.403 0.597 32 H 0.392 0.608 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.011 0.989 37 H 0.264 0.736 38 H 0.044 0.956 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.128 0.872 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -20.628 7.549 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.082 3.918 4 C -0.223 4.223 5 C -0.048 4.048 6 C 0.000 4.000 7 N -0.269 5.269 8 C 0.197 3.803 9 S -0.495 6.495 10 N -0.289 5.289 11 C 0.046 3.954 12 H 0.126 0.874 13 C -0.149 4.149 14 C -0.023 4.023 15 C -0.511 4.511 16 C -0.125 4.125 17 N -0.522 5.522 18 Si 0.706 3.294 19 H -0.182 1.182 20 H -0.209 1.209 21 H -0.212 1.212 22 C -0.056 4.056 23 C -0.152 4.152 24 C -0.107 4.107 25 C -0.173 4.173 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.149 0.851 30 H 0.171 0.829 31 H 0.240 0.760 32 H 0.227 0.773 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.146 0.854 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.779 -20.627 6.799 21.896 hybrid contribution 1.946 1.107 0.625 2.324 sum 4.725 -19.520 7.424 21.412 Atomic orbital electron populations 1.23060 0.78350 1.03745 1.01688 1.86052 1.21455 1.27091 1.88770 1.19073 0.92302 0.84147 0.96245 1.21079 1.00206 0.91471 1.09550 1.21414 0.93218 0.98849 0.91333 1.17255 0.91881 0.82615 1.08295 1.42141 1.35129 1.10882 1.38732 1.22426 0.91026 0.81824 0.85067 1.93351 1.17664 1.88278 1.50239 1.45831 1.28213 1.12815 1.42030 1.21774 0.96322 0.84585 0.92675 0.87369 1.21921 0.96101 0.97388 0.99515 1.19325 0.96289 0.92807 0.93885 1.20042 1.01348 0.90531 1.39157 1.24843 0.95856 0.97209 0.94624 1.69879 1.33786 1.09126 1.39364 0.86806 0.82341 0.79976 0.80242 1.18197 1.20891 1.21221 1.19851 0.97153 0.94508 0.94058 1.21912 0.94872 0.97285 1.01103 1.20665 0.99410 0.90422 1.00175 1.20032 0.91314 0.97691 1.08275 0.92579 0.88423 0.92368 0.85122 0.82907 0.76001 0.77268 0.93402 0.93670 0.92267 0.97083 0.92627 0.93767 0.96137 0.92600 0.94404 0.85410 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.35 10.50 -19.65 -0.21 -3.56 16 3 C 0.13 1.45 6.69 -39.22 -0.26 1.18 16 4 C -0.20 -2.36 9.03 -39.46 -0.36 -2.72 16 5 C -0.03 -0.33 7.86 -39.41 -0.31 -0.64 16 6 C 0.09 1.12 5.94 -83.63 -0.50 0.62 16 7 N -0.64 -7.20 5.33 -11.37 -0.06 -7.26 16 8 C 0.56 8.28 7.81 -86.92 -0.68 7.60 16 9 S -0.63 -12.03 23.61 -107.50 -2.54 -14.57 16 10 N -0.66 -9.47 5.08 -55.57 -0.28 -9.75 16 11 C 0.15 2.71 2.12 -67.98 -0.14 2.57 16 12 H 0.11 2.26 6.82 -51.93 -0.35 1.90 16 13 C -0.11 -2.32 5.44 -26.63 -0.14 -2.46 16 14 C 0.01 0.37 5.99 -27.48 -0.16 0.21 16 15 C -0.49 -12.51 5.49 -98.93 -0.54 -13.06 16 16 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 17 N -0.88 -24.97 12.76 55.43 0.71 -24.26 16 18 Si 0.88 20.14 27.93 -169.99 -4.75 15.39 16 19 H -0.26 -5.58 5.63 56.52 0.32 -5.26 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.02 -0.39 5.52 -27.49 -0.15 -0.54 16 23 C -0.11 -2.07 5.40 -26.64 -0.14 -2.21 16 24 C -0.09 -0.87 9.96 -39.41 -0.39 -1.26 16 25 C -0.15 -1.59 9.98 -39.45 -0.39 -1.98 16 26 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 29 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 30 H 0.15 2.31 6.08 -43.84 -0.27 2.04 16 31 H 0.40 3.06 8.84 -40.82 -0.36 2.70 16 32 H 0.39 4.24 8.62 -40.82 -0.35 3.89 16 33 H 0.05 1.02 7.47 -51.93 -0.39 0.63 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.04 0.96 4.59 -51.93 -0.24 0.73 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -31.42 351.88 -11.16 -42.58 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.05 Total: 5.67 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.29 Total: -9.55 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.36 Total: -41.27 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.21 Total: -3.56 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.75 Total: 15.39 kcal Atomic # 16 Polarization: -12.03 SS G_CDS: -2.54 Total: -14.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.42 -11.16 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195717846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.809 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds