Wall clock time and date at job start Tue Mar 31 2020 12:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35984 * 117.00153 * 2 1 4 4 C 1.38538 * 120.08145 * 359.97438 * 3 2 1 5 5 C 1.38258 * 120.01531 * 180.02562 * 4 3 2 6 6 C 1.38275 * 120.17794 * 0.02562 * 5 4 3 7 7 C 1.38206 * 120.16317 * 359.97352 * 6 5 4 8 8 C 1.38729 * 119.98166 * 359.74602 * 7 6 5 9 9 N 1.40113 * 120.08880 * 180.27475 * 8 7 6 10 10 C 1.34779 * 119.99572 * 38.98275 * 9 8 7 11 11 S 1.71195 * 120.00351 * 2.87070 * 10 9 8 12 12 N 1.34778 * 119.99370 * 182.87866 * 10 9 8 13 13 C 1.46502 * 119.99439 * 184.86684 * 12 10 9 14 14 C 1.50695 * 110.02115 * 55.53445 * 13 12 10 15 15 H 1.08002 * 120.00448 * 243.79877 * 14 13 12 16 16 C 1.37885 * 119.99899 * 63.79712 * 14 13 12 17 17 N 1.31514 * 120.00036 * 4.66796 * 16 14 13 18 18 Si 1.86801 * 119.99946 * 184.66133 * 16 14 13 19 19 H 1.48507 * 109.47053 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46935 * 120.00016 * 18 16 14 21 21 H 1.48497 * 109.47165 * 240.00357 * 18 16 14 22 22 C 1.54267 * 110.03187 * 294.13869 * 13 12 10 23 23 C 1.54967 * 104.16182 * 217.13738 * 22 13 12 24 24 C 1.54890 * 102.77388 * 37.89356 * 23 22 13 25 25 C 1.53879 * 110.03089 * 176.92511 * 13 12 10 26 26 H 1.08994 * 109.47778 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47084 * 300.00852 * 1 2 3 28 28 H 1.09002 * 109.47026 * 60.00532 * 1 2 3 29 29 H 1.08001 * 119.99454 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.90959 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.91611 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.00872 * 180.02562 * 7 6 5 33 33 H 0.96994 * 120.00288 * 218.98157 * 9 8 7 34 34 H 0.96999 * 120.00898 * 4.85748 * 12 10 9 35 35 H 0.96996 * 120.00070 * 185.00345 * 17 16 14 36 36 H 1.08997 * 110.48668 * 335.79278 * 22 13 12 37 37 H 1.09007 * 110.48039 * 98.42894 * 22 13 12 38 38 H 1.08994 * 110.72082 * 279.58063 * 23 22 13 39 39 H 1.09000 * 110.92016 * 156.29752 * 23 22 13 40 40 H 1.09007 * 110.48276 * 203.40601 * 24 23 22 41 41 H 1.09002 * 110.49112 * 80.75988 * 24 23 22 42 42 H 1.08996 * 110.03698 * 238.56455 * 25 13 12 43 43 H 1.08997 * 110.03140 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2935 2.3746 -0.0005 5 6 1.9226 3.6057 -0.0011 6 6 3.3033 3.6807 -0.0016 7 6 4.0616 2.5253 -0.0011 8 6 3.4373 1.2864 0.0054 9 7 4.2038 0.1135 0.0117 10 6 5.3318 0.0498 0.7467 11 16 5.7892 1.3748 1.7296 12 7 6.0998 -1.0571 0.7076 13 6 7.2672 -1.1699 1.5855 14 6 6.8532 -0.9769 3.0216 15 1 7.2306 -0.1357 3.5840 16 6 5.9927 -1.8744 3.6176 17 7 5.6056 -2.9478 2.9637 18 14 5.3768 -1.5657 5.3540 19 1 5.9556 -0.2977 5.8664 20 1 3.8953 -1.4642 5.3429 21 1 5.7895 -2.6894 6.2327 22 6 8.3259 -0.1182 1.1947 23 6 9.6780 -0.8477 1.3978 24 6 9.3668 -2.2862 0.9152 25 6 7.9287 -2.5479 1.4083 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2149 2.3195 -0.0005 30 1 1.3341 4.5112 -0.0019 31 1 3.7904 4.6447 -0.0024 32 1 5.1398 2.5868 -0.0011 33 1 3.9227 -0.6524 -0.5127 34 1 5.8796 -1.7790 0.0983 35 1 4.9448 -3.5412 3.3536 36 1 8.2043 0.1765 0.1524 37 1 8.2588 0.7516 1.8484 38 1 9.9627 -0.8463 2.4499 39 1 10.4596 -0.3959 0.7870 40 1 10.0596 -2.9976 1.3648 41 1 9.4134 -2.3423 -0.1724 42 1 7.9511 -3.0767 2.3612 43 1 7.3814 -3.1325 0.6688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196285531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:24 Heat of formation + Delta-G solvation = 14.997618 kcal Electronic energy + Delta-G solvation = -25480.674213 eV Core-core repulsion = 22038.587225 eV Total energy + Delta-G solvation = -3442.086988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.20331 -38.63156 -37.49965 -36.21636 -33.41680 -32.22641 -29.92529 -29.38129 -27.79621 -27.33837 -26.92563 -24.39213 -23.29882 -22.01856 -21.45344 -19.77637 -19.36457 -18.36850 -17.44013 -17.02276 -16.38542 -15.77586 -15.54131 -15.04554 -14.65765 -14.53968 -14.24905 -14.01315 -13.85522 -13.63368 -13.01660 -12.86255 -12.43487 -12.28569 -11.98194 -11.47597 -11.35030 -11.03303 -10.95996 -10.93533 -10.85801 -10.65859 -10.36571 -10.23187 -10.14953 -10.01872 -9.88501 -9.59282 -9.34469 -8.84537 -8.42765 -8.23877 -7.48122 -6.58762 -6.10879 -5.90471 -3.97596 1.53154 1.75698 2.51590 3.06239 3.32691 3.36301 3.43128 3.53801 3.60426 4.14580 4.47961 4.51873 4.96385 5.10684 5.14811 5.24545 5.32805 5.43472 5.51883 5.65173 5.71549 5.71625 5.75765 5.86582 6.16467 6.36715 6.43013 6.43252 6.54025 6.59575 6.65576 6.69147 6.77384 6.81201 6.87520 7.06035 7.10191 7.15127 7.28650 7.39551 7.61172 7.68448 7.91290 8.02830 8.23842 8.50312 9.00575 9.55549 10.95427 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.005108 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.267354 B = 5480.530007 C = 6180.776351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.106 3.894 4 C -0.210 4.210 5 C -0.091 4.091 6 C -0.152 4.152 7 C -0.040 4.040 8 C 0.124 3.876 9 N -0.647 5.647 10 C 0.562 3.438 11 S -0.636 6.636 12 N -0.627 5.627 13 C 0.285 3.715 14 C -0.456 4.456 15 H 0.076 0.924 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.289 1.289 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.090 4.090 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.400 0.600 34 H 0.375 0.625 35 H 0.258 0.742 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 4.465 -10.026 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.233 6.233 3 C 0.058 3.942 4 C -0.231 4.231 5 C -0.110 4.110 6 C -0.173 4.173 7 C -0.064 4.064 8 C 0.028 3.972 9 N -0.275 5.275 10 C 0.202 3.798 11 S -0.501 6.501 12 N -0.248 5.248 13 C 0.205 3.795 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.192 1.192 20 H -0.214 1.214 21 H -0.216 1.216 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.166 4.166 25 C -0.129 4.129 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.177 0.823 33 H 0.236 0.764 34 H 0.210 0.790 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.231 4.873 -9.138 11.603 hybrid contribution -1.654 -1.437 0.053 2.191 sum -6.885 3.437 -9.086 11.906 Atomic orbital electron populations 1.22974 0.78754 1.03533 1.01059 1.86055 1.21089 1.26912 1.89210 1.18813 0.90545 0.84709 1.00117 1.20841 0.99241 0.91909 1.11072 1.20847 0.94807 0.96447 0.98949 1.20855 0.93315 0.98123 1.04991 1.21605 1.02617 0.89420 0.92773 1.16751 0.86005 0.86569 1.07869 1.42050 1.22684 1.15304 1.47424 1.21919 0.81581 0.91349 0.84960 1.92547 1.81836 1.25673 1.50038 1.46764 1.27281 1.13598 1.37107 1.19226 0.79955 0.91411 0.88951 1.21308 1.26977 1.08039 0.93258 0.90611 1.24936 0.96770 0.94163 0.98025 1.69946 1.31305 1.12617 1.39268 0.86477 0.78635 0.78175 0.84621 1.19170 1.21438 1.21558 1.22772 0.92936 0.99652 0.99699 1.22445 0.97384 0.95329 1.00645 1.22443 0.98336 0.97035 0.98832 1.22164 0.92054 0.97141 1.01556 0.88626 0.92792 0.92939 0.85860 0.86377 0.85909 0.82264 0.76369 0.79026 0.93252 0.94302 0.89113 0.91531 0.93397 0.92961 0.93470 0.89538 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.92 10.12 -19.69 -0.20 -5.12 16 3 C 0.11 1.72 6.70 -39.08 -0.26 1.46 16 4 C -0.21 -2.89 9.04 -39.46 -0.36 -3.25 16 5 C -0.09 -1.20 10.04 -39.56 -0.40 -1.60 16 6 C -0.15 -2.22 10.04 -39.58 -0.40 -2.61 16 7 C -0.04 -0.69 7.85 -39.41 -0.31 -0.99 16 8 C 0.12 2.21 6.04 -83.50 -0.50 1.71 16 9 N -0.65 -11.89 5.15 -11.28 -0.06 -11.95 16 10 C 0.56 11.98 7.34 -86.91 -0.64 11.35 16 11 S -0.64 -15.20 20.81 -107.50 -2.24 -17.44 16 12 N -0.63 -13.07 4.76 -49.33 -0.24 -13.30 16 13 C 0.28 6.30 0.51 -131.85 -0.07 6.23 16 14 C -0.46 -11.79 5.58 -34.44 -0.19 -11.98 16 15 H 0.08 2.12 7.30 -52.49 -0.38 1.74 16 16 C 0.06 1.68 5.04 -17.82 -0.09 1.59 16 17 N -0.89 -23.47 11.56 55.43 0.64 -22.83 16 18 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C -0.11 -2.28 4.69 -25.03 -0.12 -2.40 16 23 C -0.12 -2.15 6.91 -24.70 -0.17 -2.32 16 24 C -0.13 -2.25 6.83 -25.07 -0.17 -2.42 16 25 C -0.09 -1.88 5.18 -25.61 -0.13 -2.01 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 29 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.16 2.99 5.80 -37.85 -0.22 2.77 16 33 H 0.40 6.48 8.68 -40.82 -0.35 6.12 16 34 H 0.37 7.10 8.10 -40.82 -0.33 6.77 16 35 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 36 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.09 2.07 6.37 -51.93 -0.33 1.74 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 2.05 6.78 -51.93 -0.35 1.70 16 43 H 0.04 0.83 7.45 -51.93 -0.39 0.44 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -30.05 350.15 -10.64 -40.70 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.00 Total: 13.33 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.81 Total: -5.92 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.35 Total: -48.09 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.20 Total: -5.12 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: -15.20 SS G_CDS: -2.24 Total: -17.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.05 -10.64 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196285531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.695 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds