Wall clock time and date at job start Tue Mar 31 2020 12:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35051 * 125.92353 * 2 1 4 4 C 1.35066 * 107.99156 * 180.02562 * 3 2 1 5 5 C 1.40882 * 107.84877 * 359.97438 * 4 3 2 6 6 C 1.48323 * 126.04241 * 179.97438 * 5 4 3 7 7 C 1.39396 * 119.64269 * 180.02562 * 6 5 4 8 8 C 1.38229 * 119.15225 * 179.97438 * 7 6 5 9 9 C 1.39452 * 118.45323 * 359.72810 * 8 7 6 10 10 N 1.39694 * 120.39555 * 180.28135 * 9 8 7 11 11 C 1.39704 * 119.99789 * 35.27532 * 10 9 8 12 12 C 1.39361 * 119.95485 * 28.25236 * 11 10 9 13 13 C 1.38471 * 120.42123 * 179.76517 * 12 11 10 14 14 C 1.37688 * 120.32559 * 0.51593 * 13 12 11 15 15 C 1.40754 * 119.90151 * 359.74437 * 14 13 12 16 16 C 1.41406 * 120.20956 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00243 * 204.42651 * 16 15 14 18 18 C 1.39932 * 120.00131 * 24.43366 * 16 15 14 19 19 N 1.30833 * 119.99740 * 19.07908 * 18 16 15 20 20 Si 1.86796 * 120.00163 * 199.08065 * 18 16 15 21 21 H 1.48505 * 109.47095 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47072 * 119.99871 * 20 18 16 23 23 H 1.48496 * 109.47090 * 239.99768 * 20 18 16 24 24 C 1.38304 * 119.95315 * 208.53642 * 11 10 9 25 25 C 1.38966 * 119.21321 * 0.53426 * 9 8 7 26 26 N 1.31696 * 120.77966 * 359.45434 * 25 9 8 27 27 N 1.31659 * 107.91086 * 0.24215 * 5 4 3 28 28 H 1.08997 * 109.46897 * 90.00169 * 1 2 3 29 29 H 1.09006 * 109.46765 * 209.99926 * 1 2 3 30 30 H 1.08997 * 109.47189 * 329.99991 * 1 2 3 31 31 H 1.08009 * 126.00465 * 0.06651 * 3 2 1 32 32 H 1.07996 * 126.07447 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.42632 * 359.97438 * 7 6 5 34 34 H 1.08007 * 120.77450 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00072 * 215.26981 * 10 9 8 36 36 H 1.07998 * 119.78512 * 0.03070 * 12 11 10 37 37 H 1.07998 * 119.83568 * 180.24409 * 13 12 11 38 38 H 1.08010 * 120.05144 * 179.72541 * 14 13 12 39 39 H 0.96995 * 119.99913 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.16007 * 359.94963 * 24 11 10 41 41 H 1.08000 * 119.61020 * 179.73062 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0936 0.0000 4 6 3.5424 0.6778 -0.0006 5 6 3.5404 -0.7310 -0.0003 6 6 4.7384 -1.6055 -0.0013 7 6 4.5810 -2.9905 -0.0015 8 6 5.7045 -3.7959 -0.0030 9 6 6.9588 -3.1865 -0.0101 10 7 8.1210 -3.9614 -0.0177 11 6 8.1500 -5.1702 -0.7176 12 6 7.3357 -5.3472 -1.8346 13 6 7.3602 -6.5395 -2.5383 14 6 8.1824 -7.5678 -2.1354 15 6 9.0066 -7.4057 -1.0060 16 6 9.8540 -8.4573 -0.5867 17 1 10.1752 -8.5143 0.4429 18 6 10.2765 -9.4241 -1.5059 19 7 10.2163 -9.1771 -2.7893 20 14 10.9265 -11.0674 -0.9005 21 1 10.8924 -11.0968 0.5838 22 1 10.0797 -12.1628 -1.4374 23 1 12.3247 -11.2488 -1.3668 24 6 8.9825 -6.1916 -0.2975 25 6 7.0389 -1.7992 -0.0041 26 7 5.9481 -1.0611 -0.0026 27 7 2.2870 -1.1341 -0.0049 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.9223 2.1205 0.0010 32 1 4.4162 1.3125 -0.0003 33 1 3.5940 -3.4288 -0.0005 34 1 5.6129 -4.8721 -0.0036 35 1 8.9079 -3.6603 0.4628 36 1 6.6844 -4.5478 -2.1558 37 1 6.7280 -6.6650 -3.4049 38 1 8.1948 -8.4975 -2.6850 39 1 10.5096 -9.8471 -3.4264 40 1 9.6113 -6.0570 0.5702 41 1 8.0070 -1.3205 -0.0051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216563195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:26 Heat of formation + Delta-G solvation = 139.919393 kcal Electronic energy + Delta-G solvation = -24319.890046 eV Core-core repulsion = 20780.068873 eV Total energy + Delta-G solvation = -3539.821173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21592 -39.95794 -37.90680 -35.49138 -33.69242 -33.17113 -31.94032 -30.49547 -29.93713 -29.81125 -27.79110 -26.19239 -25.35946 -23.47876 -23.09514 -21.09477 -20.72509 -20.63767 -20.00988 -17.62582 -17.49055 -16.86979 -16.18033 -15.69354 -15.62088 -15.29366 -14.94485 -14.54063 -14.05107 -13.90243 -13.80096 -13.44279 -13.23811 -12.97091 -12.79575 -12.71369 -12.56362 -12.28663 -12.04660 -11.89103 -11.46792 -11.16351 -10.84455 -10.77385 -10.57184 -10.43791 -10.01282 -9.67953 -9.56033 -9.39266 -9.26270 -9.04689 -8.72433 -7.98842 -7.55735 -6.83826 -6.51237 -4.43394 1.00796 1.53500 1.90838 2.31766 2.71942 2.81572 3.04286 3.07240 3.10071 3.19841 3.79047 3.90094 4.14937 4.20586 4.55025 4.57234 4.64938 4.86342 4.93005 5.10677 5.17182 5.23727 5.41341 5.61634 5.63835 5.74811 5.87753 5.90566 6.16293 6.28871 6.37616 6.43333 6.56166 6.68135 6.86554 6.87237 6.97007 7.00069 7.15739 7.18952 7.55744 7.60586 7.71284 7.97469 8.02641 8.17681 8.25834 8.30881 8.59576 8.83750 8.91075 10.12026 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.002169 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.197457 B =12906.695620 C =13309.296510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.378 5.378 3 C 0.043 3.957 4 C -0.237 4.237 5 C 0.134 3.866 6 C 0.135 3.865 7 C -0.104 4.104 8 C -0.120 4.120 9 C 0.168 3.832 10 N -0.681 5.681 11 C 0.183 3.817 12 C -0.271 4.271 13 C -0.082 4.082 14 C -0.180 4.180 15 C 0.131 3.869 16 C -0.462 4.462 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.788 5.788 20 Si 0.907 3.093 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.259 4.259 25 C 0.045 3.955 26 N -0.437 5.437 27 N -0.286 5.286 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.404 0.596 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.281 0.719 40 H 0.095 0.905 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 14.986 4.510 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.102 4.102 4 C -0.266 4.266 5 C -0.031 4.031 6 C -0.005 4.005 7 C -0.126 4.126 8 C -0.149 4.149 9 C 0.063 3.937 10 N -0.304 5.304 11 C 0.089 3.911 12 C -0.293 4.293 13 C -0.101 4.101 14 C -0.200 4.200 15 C 0.128 3.872 16 C -0.491 4.491 17 H 0.097 0.903 18 C -0.141 4.141 19 N -0.413 5.413 20 Si 0.731 3.269 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.200 1.200 24 C -0.282 4.282 25 C -0.119 4.119 26 N -0.146 5.146 27 N -0.110 5.110 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.191 0.809 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.240 0.760 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.111 14.738 4.202 20.833 hybrid contribution 1.081 -0.776 0.229 1.350 sum -13.030 13.962 4.431 19.605 Atomic orbital electron populations 1.21830 0.74254 1.04403 1.03307 1.48449 1.06491 1.03669 1.57515 1.22475 0.91151 0.93324 1.03243 1.21518 0.96876 0.94149 1.14053 1.20197 0.90294 0.92723 0.99856 1.18131 0.88715 0.89200 1.04429 1.21875 0.99600 0.93072 0.98057 1.21510 0.90658 1.01415 1.01275 1.18923 0.88015 0.91518 0.95198 1.42114 1.11919 1.21292 1.55037 1.17433 0.98074 0.84162 0.91416 1.20101 1.09377 0.99635 1.00138 1.20492 0.98298 0.93648 0.97672 1.21283 0.98690 0.99064 1.00959 1.17378 0.89390 0.90247 0.90189 1.19586 1.25828 1.06967 0.96739 0.90335 1.25919 0.93960 0.99868 0.94378 1.69850 1.34852 1.34231 1.02335 0.86289 0.78760 0.81390 0.80471 1.18352 1.19636 1.19988 1.20613 1.08372 0.93500 1.05694 1.22377 0.96846 0.88888 1.03784 1.67224 0.97499 1.40013 1.09899 1.77537 1.00779 1.07308 1.25398 0.90831 0.89312 0.89535 0.80886 0.82889 0.84586 0.83908 0.76043 0.89241 0.89149 0.86554 0.90825 0.88723 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.46 59.85 0.69 1.28 16 2 N -0.38 -4.04 4.01 -68.20 -0.27 -4.31 16 3 C 0.04 0.41 11.46 -17.26 -0.20 0.21 16 4 C -0.24 -2.95 10.53 -39.71 -0.42 -3.37 16 5 C 0.13 2.00 7.01 -82.79 -0.58 1.42 16 6 C 0.13 2.15 6.75 -82.93 -0.56 1.59 16 7 C -0.10 -1.63 9.72 -39.15 -0.38 -2.01 16 8 C -0.12 -1.98 8.09 -39.13 -0.32 -2.30 16 9 C 0.17 2.75 5.78 -83.55 -0.48 2.27 16 10 N -0.68 -11.76 5.45 -8.32 -0.05 -11.81 16 11 C 0.18 3.89 5.97 -83.83 -0.50 3.39 16 12 C -0.27 -5.93 8.15 -39.08 -0.32 -6.25 16 13 C -0.08 -1.89 10.01 -39.70 -0.40 -2.29 16 14 C -0.18 -4.57 8.70 -38.83 -0.34 -4.90 16 15 C 0.13 3.39 5.57 -106.85 -0.59 2.79 16 16 C -0.46 -11.91 9.04 -37.74 -0.34 -12.25 16 17 H 0.08 1.95 7.92 -52.48 -0.42 1.54 16 18 C 0.08 1.89 5.11 -17.34 -0.09 1.81 16 19 N -0.79 -19.94 11.03 55.55 0.61 -19.32 16 20 Si 0.91 18.22 29.60 -169.99 -5.03 13.19 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 24 C -0.26 -6.07 9.69 -38.67 -0.37 -6.44 16 25 C 0.04 0.67 11.12 -17.34 -0.19 0.48 16 26 N -0.44 -6.91 10.06 -9.61 -0.10 -7.01 16 27 N -0.29 -4.10 12.21 33.42 0.41 -3.70 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.14 1.96 7.84 -52.49 -0.41 1.55 16 34 H 0.14 2.49 7.07 -52.48 -0.37 2.12 16 35 H 0.40 5.99 8.91 -40.82 -0.36 5.63 16 36 H 0.09 1.88 6.67 -52.49 -0.35 1.53 16 37 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.12 3.05 6.20 -52.48 -0.33 2.72 16 39 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 41 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -30.28 355.45 -9.22 -39.50 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.75 Total: 12.68 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -5.40 Total: -24.58 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.61 Total: -46.14 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.28 -9.22 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216563195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.417 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds