Wall clock time and date at job start Tue Mar 31 2020 12:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35051 * 125.92353 * 2 1 4 4 C 1.35066 * 107.99156 * 180.02562 * 3 2 1 5 5 C 1.40882 * 107.84877 * 359.97438 * 4 3 2 6 6 C 1.48323 * 126.04241 * 179.97438 * 5 4 3 7 7 C 1.39396 * 119.64269 * 180.02562 * 6 5 4 8 8 C 1.38229 * 119.15225 * 179.97438 * 7 6 5 9 9 C 1.39452 * 118.45323 * 359.72810 * 8 7 6 10 10 N 1.39694 * 120.39555 * 180.28135 * 9 8 7 11 11 C 1.39704 * 119.99789 * 35.27532 * 10 9 8 12 12 C 1.39361 * 119.95485 * 28.25236 * 11 10 9 13 13 C 1.38471 * 120.42123 * 179.76517 * 12 11 10 14 14 C 1.37688 * 120.32559 * 0.51593 * 13 12 11 15 15 C 1.40754 * 119.90151 * 359.74437 * 14 13 12 16 16 C 1.41406 * 120.20956 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00243 * 204.42651 * 16 15 14 18 18 C 1.39932 * 120.00131 * 24.43366 * 16 15 14 19 19 N 1.30833 * 119.99740 * 19.07908 * 18 16 15 20 20 Si 1.86796 * 120.00163 * 199.08065 * 18 16 15 21 21 H 1.48505 * 109.47095 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47072 * 119.99871 * 20 18 16 23 23 H 1.48496 * 109.47090 * 239.99768 * 20 18 16 24 24 C 1.38304 * 119.95315 * 208.53642 * 11 10 9 25 25 C 1.38966 * 119.21321 * 0.53426 * 9 8 7 26 26 N 1.31696 * 120.77966 * 359.45434 * 25 9 8 27 27 N 1.31659 * 107.91086 * 0.24215 * 5 4 3 28 28 H 1.08997 * 109.46897 * 90.00169 * 1 2 3 29 29 H 1.09006 * 109.46765 * 209.99926 * 1 2 3 30 30 H 1.08997 * 109.47189 * 329.99991 * 1 2 3 31 31 H 1.08009 * 126.00465 * 0.06651 * 3 2 1 32 32 H 1.07996 * 126.07447 * 180.02562 * 4 3 2 33 33 H 1.07996 * 120.42632 * 359.97438 * 7 6 5 34 34 H 1.08007 * 120.77450 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00072 * 215.26981 * 10 9 8 36 36 H 1.07998 * 119.78512 * 0.03070 * 12 11 10 37 37 H 1.07998 * 119.83568 * 180.24409 * 13 12 11 38 38 H 1.08010 * 120.05144 * 179.72541 * 14 13 12 39 39 H 0.96995 * 119.99913 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.16007 * 359.94963 * 24 11 10 41 41 H 1.08000 * 119.61020 * 179.73062 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0936 0.0000 4 6 3.5424 0.6778 -0.0006 5 6 3.5404 -0.7310 -0.0003 6 6 4.7384 -1.6055 -0.0013 7 6 4.5810 -2.9905 -0.0015 8 6 5.7045 -3.7959 -0.0030 9 6 6.9588 -3.1865 -0.0101 10 7 8.1210 -3.9614 -0.0177 11 6 8.1500 -5.1702 -0.7176 12 6 7.3357 -5.3472 -1.8346 13 6 7.3602 -6.5395 -2.5383 14 6 8.1824 -7.5678 -2.1354 15 6 9.0066 -7.4057 -1.0060 16 6 9.8540 -8.4573 -0.5867 17 1 10.1752 -8.5143 0.4429 18 6 10.2765 -9.4241 -1.5059 19 7 10.2163 -9.1771 -2.7893 20 14 10.9265 -11.0674 -0.9005 21 1 10.8924 -11.0968 0.5838 22 1 10.0797 -12.1628 -1.4374 23 1 12.3247 -11.2488 -1.3668 24 6 8.9825 -6.1916 -0.2975 25 6 7.0389 -1.7992 -0.0041 26 7 5.9481 -1.0611 -0.0026 27 7 2.2870 -1.1341 -0.0049 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.9223 2.1205 0.0010 32 1 4.4162 1.3125 -0.0003 33 1 3.5940 -3.4288 -0.0005 34 1 5.6129 -4.8721 -0.0036 35 1 8.9079 -3.6603 0.4628 36 1 6.6844 -4.5478 -2.1558 37 1 6.7280 -6.6650 -3.4049 38 1 8.1948 -8.4975 -2.6850 39 1 10.5096 -9.8471 -3.4264 40 1 9.6113 -6.0570 0.5702 41 1 8.0070 -1.3205 -0.0051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216563195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:25 Heat of formation + Delta-G solvation = 123.190460 kcal Electronic energy + Delta-G solvation = -24320.615467 eV Core-core repulsion = 20780.068873 eV Total energy + Delta-G solvation = -3540.546594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13360 -41.22316 -39.56513 -37.04667 -35.18631 -34.31387 -33.18758 -31.83483 -31.53898 -30.93771 -29.20095 -27.23117 -27.09679 -24.73542 -24.32884 -22.68456 -22.26845 -21.72888 -21.16259 -19.35812 -18.52355 -18.07736 -17.60220 -17.16281 -16.64909 -16.49800 -16.36175 -16.28821 -15.29356 -15.06165 -14.88422 -14.62949 -14.59472 -14.40097 -14.06418 -13.86999 -13.70305 -13.43807 -13.32702 -13.18188 -13.00199 -12.80203 -12.58190 -12.20016 -12.00027 -11.79341 -11.73748 -11.34832 -11.01973 -10.75709 -10.63836 -10.37456 -9.73367 -9.43008 -9.28714 -8.66275 -8.08250 -6.36445 -0.21149 0.28134 0.95700 1.00463 1.22101 1.39722 1.51889 1.54834 1.60048 1.88492 2.20848 2.41385 2.72498 2.99399 3.16094 3.70206 3.74318 3.83218 3.92615 4.08508 4.17412 4.26623 4.41695 4.48717 4.59825 4.71245 4.73031 4.74757 4.82953 4.92581 5.04339 5.07312 5.08908 5.16055 5.23871 5.32693 5.38882 5.55871 5.61742 5.86183 5.93936 6.11120 6.17850 6.18536 6.49460 6.63233 6.74520 6.80824 6.94299 6.98217 7.06787 8.32127 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.002169 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.197457 B =12906.695620 C =13309.296510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.374 5.374 3 C 0.065 3.935 4 C -0.263 4.263 5 C 0.102 3.898 6 C 0.136 3.864 7 C -0.109 4.109 8 C -0.124 4.124 9 C 0.150 3.850 10 N -0.675 5.675 11 C 0.201 3.799 12 C -0.271 4.271 13 C -0.082 4.082 14 C -0.209 4.209 15 C 0.104 3.896 16 C -0.497 4.497 17 H 0.077 0.923 18 C 0.037 3.963 19 N -0.820 5.820 20 Si 0.981 3.019 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.266 1.266 24 C -0.275 4.275 25 C 0.058 3.942 26 N -0.445 5.445 27 N -0.319 5.319 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.223 0.777 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.416 0.584 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.289 0.711 40 H 0.102 0.898 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.589 17.199 5.048 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.157 5.157 3 C -0.081 4.081 4 C -0.292 4.292 5 C -0.061 4.061 6 C -0.003 4.003 7 C -0.131 4.131 8 C -0.153 4.153 9 C 0.048 3.952 10 N -0.299 5.299 11 C 0.105 3.895 12 C -0.293 4.293 13 C -0.101 4.101 14 C -0.230 4.230 15 C 0.101 3.899 16 C -0.526 4.526 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.445 5.445 20 Si 0.801 3.199 21 H -0.182 1.182 22 H -0.189 1.189 23 H -0.190 1.190 24 C -0.298 4.298 25 C -0.105 4.105 26 N -0.155 5.155 27 N -0.145 5.145 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.240 0.760 32 H 0.174 0.826 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.254 0.746 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.508 16.992 4.754 23.491 hybrid contribution 1.253 -1.190 0.071 1.730 sum -14.256 15.802 4.825 21.822 Atomic orbital electron populations 1.22266 0.71490 1.06224 1.04769 1.48896 1.08046 1.03081 1.55673 1.23158 0.89952 0.94928 1.00047 1.21715 0.98549 0.93175 1.15767 1.20265 0.90181 0.93833 1.01844 1.18478 0.89459 0.89547 1.02784 1.21925 0.99607 0.93191 0.98373 1.21481 0.91343 1.00913 1.01565 1.18987 0.87389 0.92045 0.96808 1.41903 1.12923 1.20090 1.55004 1.17381 0.96343 0.84926 0.90867 1.20241 1.09512 0.99429 1.00101 1.20720 0.97765 0.93463 0.98166 1.21199 1.00552 0.99360 1.01850 1.17726 0.89853 0.91367 0.90921 1.19829 1.27146 1.08536 0.97072 0.90527 1.26760 0.93822 1.03025 0.94274 1.69900 1.35558 1.35616 1.03463 0.85184 0.78361 0.76520 0.79800 1.18154 1.18947 1.19042 1.20728 1.09474 0.93520 1.06059 1.22793 0.97850 0.88242 1.01615 1.67345 0.97632 1.39958 1.10517 1.77440 1.01066 1.09623 1.26402 0.89498 0.89493 0.85804 0.76013 0.82632 0.83991 0.85179 0.74561 0.88090 0.87312 0.88274 0.90069 0.87992 0.79883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.46 127.77 1.46 2.22 16 2 N -0.37 -6.99 4.01 -369.68 -1.48 -8.47 16 3 C 0.06 1.03 11.46 83.47 0.96 1.99 16 4 C -0.26 -6.09 10.53 22.19 0.23 -5.86 16 5 C 0.10 2.96 7.01 42.50 0.30 3.26 16 6 C 0.14 4.28 6.75 41.98 0.28 4.57 16 7 C -0.11 -3.42 9.72 22.55 0.22 -3.20 16 8 C -0.12 -4.11 8.09 22.56 0.18 -3.93 16 9 C 0.15 4.81 5.78 38.36 0.22 5.03 16 10 N -0.67 -22.79 5.45 -180.24 -0.98 -23.77 16 11 C 0.20 8.55 5.97 38.17 0.23 8.78 16 12 C -0.27 -11.89 8.15 22.60 0.18 -11.71 16 13 C -0.08 -3.86 10.01 22.20 0.22 -3.64 16 14 C -0.21 -11.05 8.70 22.75 0.20 -10.85 16 15 C 0.10 5.59 5.57 -21.31 -0.12 5.48 16 16 C -0.50 -26.54 9.04 23.46 0.21 -26.33 16 17 H 0.08 3.95 7.92 -2.91 -0.02 3.93 16 18 C 0.04 1.85 5.11 85.25 0.44 2.28 16 19 N -0.82 -42.71 11.03 21.82 0.24 -42.47 16 20 Si 0.98 37.89 29.60 68.60 2.03 39.92 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 23 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.28 -13.16 9.69 22.86 0.22 -12.94 16 25 C 0.06 1.65 11.12 84.89 0.94 2.60 16 26 N -0.45 -13.57 10.06 -184.30 -1.85 -15.43 16 27 N -0.32 -8.86 12.21 -48.19 -0.59 -9.45 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.14 4.17 7.84 -2.91 -0.02 4.15 16 34 H 0.13 4.62 7.07 -2.91 -0.02 4.60 16 35 H 0.42 11.88 8.91 -92.71 -0.83 11.05 16 36 H 0.10 4.18 6.67 -2.91 -0.02 4.16 16 37 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.10 5.47 6.20 -2.91 -0.02 5.46 16 39 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 40 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -68.18 355.45 4.00 -64.18 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: 0.25 Total: 37.74 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 6.39 Total: -42.26 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -4.67 Total: -99.59 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -68.18 4.00 -64.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216563195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.374 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds