Wall clock time and date at job start Tue Mar 31 2020 12:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00261 * 2 1 4 4 O 1.20826 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99939 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.01672 * 59.93823 * 5 3 2 7 7 C 1.53866 * 110.03161 * 298.54309 * 5 3 2 8 8 C 1.54267 * 106.60016 * 240.71541 * 7 5 3 9 9 C 1.54887 * 104.31402 * 336.32667 * 8 7 5 10 10 H 1.08998 * 110.75472 * 279.69809 * 9 8 7 11 11 O 1.42889 * 110.75879 * 156.31995 * 9 8 7 12 12 C 1.35744 * 117.00042 * 91.45384 * 11 9 8 13 13 C 1.41197 * 120.28688 * 90.00056 * 12 11 9 14 14 C 1.41180 * 120.26013 * 359.95628 * 13 12 11 15 15 H 1.07998 * 120.00414 * 330.03512 * 14 13 12 16 16 C 1.39924 * 119.99693 * 150.04005 * 14 13 12 17 17 N 1.30873 * 119.99829 * 161.83904 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 341.83050 * 16 14 13 19 19 H 1.48503 * 109.46651 * 95.40992 * 18 16 14 20 20 H 1.48503 * 109.47357 * 215.40464 * 18 16 14 21 21 H 1.48494 * 109.47133 * 335.40933 * 18 16 14 22 22 C 1.40761 * 119.47344 * 179.97438 * 13 12 11 23 23 C 1.36487 * 120.02476 * 359.97438 * 22 13 12 24 24 C 1.38776 * 120.58016 * 0.02562 * 23 22 13 25 25 C 1.38704 * 120.53470 * 359.74037 * 24 23 22 26 26 O 1.36015 * 120.02304 * 180.27791 * 25 24 23 27 27 C 1.42899 * 116.99739 * 0.23940 * 26 25 24 28 28 C 1.54267 * 110.02845 * 181.37952 * 5 3 2 29 29 H 1.08998 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46817 * 299.99881 * 1 2 3 31 31 H 1.08996 * 109.47295 * 59.99371 * 1 2 3 32 32 H 1.09001 * 110.03581 * 121.42847 * 7 5 3 33 33 H 1.08998 * 110.03465 * 0.02562 * 7 5 3 34 34 H 1.08999 * 110.48408 * 95.07263 * 8 7 5 35 35 H 1.09003 * 110.48498 * 217.57925 * 8 7 5 36 36 H 0.96998 * 119.99830 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.99023 * 179.97438 * 22 13 12 38 38 H 1.08007 * 119.71507 * 179.97438 * 23 22 13 39 39 H 1.08003 * 119.73508 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47160 * 299.99250 * 27 26 25 41 41 H 1.08993 * 109.47581 * 59.99412 * 27 26 25 42 42 H 1.09001 * 109.47197 * 180.02562 * 27 26 25 43 43 H 1.09006 * 110.48313 * 261.56831 * 28 5 3 44 44 H 1.08992 * 110.49203 * 24.08034 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9655 0.7821 -0.8872 7 6 4.1294 0.6123 1.2689 8 6 4.9038 1.7073 2.0311 9 6 5.2791 2.7407 0.9401 10 1 6.1545 2.4111 0.3807 11 8 5.5006 4.0289 1.5175 12 6 6.7720 4.3280 1.8873 13 6 7.6532 4.9450 0.9727 14 6 7.2193 5.2551 -0.3345 15 1 6.4645 4.6474 -0.8113 16 6 7.7672 6.3497 -1.0123 17 7 7.6499 6.4397 -2.3126 18 14 8.6661 7.6826 -0.0611 19 1 10.1247 7.4045 -0.0777 20 1 8.4065 9.0017 -0.6920 21 1 8.1817 7.7013 1.3425 22 6 8.9677 5.2482 1.3745 23 6 9.3819 4.9464 2.6395 24 6 8.5173 4.3400 3.5398 25 6 7.2155 4.0352 3.1704 26 8 6.3751 3.4460 4.0629 27 6 6.8982 3.1741 5.3646 28 6 4.0183 2.7493 0.0344 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.8023 -0.2015 0.9985 33 1 3.3141 0.2333 1.8853 34 1 4.2689 2.1662 2.7890 35 1 5.8020 1.2916 2.4879 36 1 8.0295 7.1987 -2.7824 37 1 9.6488 5.7198 0.6816 38 1 10.3918 5.1808 2.9424 39 1 8.8595 4.1068 4.5372 40 1 7.7528 2.5028 5.2799 41 1 7.2140 4.1070 5.8315 42 1 6.1271 2.7046 5.9753 43 1 4.2715 3.0946 -0.9680 44 1 3.2395 3.3769 0.4676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:58 Heat of formation + Delta-G solvation = -148.289971 kcal Electronic energy + Delta-G solvation = -27680.713781 eV Core-core repulsion = 23756.500490 eV Total energy + Delta-G solvation = -3924.213291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63151 -39.35529 -37.94818 -36.80408 -36.29121 -35.13726 -33.51643 -30.17958 -29.46240 -28.90481 -28.08012 -27.01989 -26.57899 -24.91153 -22.40093 -21.35664 -21.02685 -19.95961 -19.69194 -18.01853 -17.61854 -17.08689 -16.60555 -16.27913 -15.96722 -15.41436 -15.34855 -14.97077 -14.87211 -14.36333 -13.77067 -13.65792 -13.26091 -13.20707 -12.99131 -12.74926 -12.53152 -12.34715 -12.11728 -11.77509 -11.68104 -11.42429 -11.31457 -11.14922 -10.91099 -10.86419 -10.84203 -10.66849 -10.60812 -10.31030 -10.18785 -10.06566 -9.84271 -9.67276 -9.29583 -8.64185 -7.63354 -7.10932 -7.03349 -4.55137 2.25600 2.38730 2.60118 2.70432 3.08287 3.19017 3.31611 3.94694 4.04802 4.32103 4.55018 4.66598 4.78265 4.98715 5.04742 5.07388 5.22015 5.34823 5.42222 5.50406 5.58061 5.63840 5.68963 5.75320 5.76677 5.84564 5.91113 5.94930 6.05758 6.25441 6.33820 6.36865 6.41192 6.48027 6.60796 6.66907 6.68328 6.81926 7.09056 7.37245 7.49899 7.61484 7.74793 7.78477 8.20966 8.24044 8.43190 8.68142 9.02300 9.97053 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.004336 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.426519 B = 6456.005452 C = 8186.348056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.501 6.501 5 C -0.084 4.084 6 H 0.112 0.888 7 C -0.109 4.109 8 C -0.139 4.139 9 C 0.089 3.911 10 H 0.067 0.933 11 O -0.291 6.291 12 C -0.047 4.047 13 C 0.102 3.898 14 C -0.418 4.418 15 H 0.096 0.904 16 C 0.085 3.915 17 N -0.797 5.797 18 Si 0.913 3.087 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.242 1.242 22 C -0.253 4.253 23 C -0.048 4.048 24 C -0.324 4.324 25 C 0.147 3.853 26 O -0.314 6.314 27 C 0.033 3.967 28 C -0.109 4.109 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.287 0.713 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -10.721 5.920 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.388 6.388 5 C -0.103 4.103 6 H 0.130 0.870 7 C -0.147 4.147 8 C -0.177 4.177 9 C 0.032 3.968 10 H 0.085 0.915 11 O -0.207 6.207 12 C -0.092 4.092 13 C 0.098 3.902 14 C -0.445 4.445 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.420 5.420 18 Si 0.739 3.261 19 H -0.196 1.196 20 H -0.217 1.217 21 H -0.165 1.165 22 C -0.272 4.272 23 C -0.066 4.066 24 C -0.344 4.344 25 C 0.102 3.898 26 O -0.228 6.228 27 C -0.063 4.063 28 C -0.146 4.146 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.020 -10.263 5.617 13.157 hybrid contribution 0.657 0.464 0.351 0.878 sum -5.363 -9.799 5.968 12.665 Atomic orbital electron populations 1.23235 0.76800 1.03389 1.02533 1.86516 1.23079 1.33803 1.84381 1.23855 0.92187 0.81094 0.71866 1.90668 1.67018 1.36302 1.44773 1.21673 0.86506 1.00126 1.01989 0.87049 1.22041 0.99892 0.98411 0.94355 1.22820 1.00193 0.95843 0.98823 1.23193 0.96301 0.84917 0.92403 0.91497 1.86105 1.24298 1.31027 1.79282 1.17955 0.86451 1.15113 0.89713 1.17733 0.89912 0.90375 0.92153 1.19368 1.18802 1.10429 0.95930 0.88564 1.26203 0.93295 0.99511 0.94549 1.69700 1.34688 1.29023 1.08550 0.86285 0.79476 0.78222 0.82104 1.19577 1.21708 1.16490 1.20619 0.96445 1.12855 0.97270 1.20147 0.97295 0.95913 0.93255 1.20312 0.94289 1.18929 1.00871 1.19252 0.88598 0.92750 0.89232 1.86111 1.39294 1.75852 1.21523 1.22828 0.99637 1.00077 0.83785 1.22417 0.98433 0.92451 1.01299 0.88311 0.91990 0.91988 0.90534 0.91348 0.90565 0.91328 0.90203 0.87804 0.88503 0.87918 0.93563 0.93492 0.89668 0.90090 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.48 10.49 -39.25 -0.41 -4.89 16 3 C 0.47 6.85 7.02 36.01 0.25 7.10 16 4 O -0.50 -8.82 15.16 -18.75 -0.28 -9.11 16 5 C -0.08 -1.17 3.41 -90.66 -0.31 -1.48 16 6 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 7 C -0.11 -1.41 6.42 -25.62 -0.16 -1.58 16 8 C -0.14 -2.24 5.70 -25.07 -0.14 -2.39 16 9 C 0.09 1.70 3.21 -24.55 -0.08 1.62 16 10 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 11 O -0.29 -6.82 9.00 -33.48 -0.30 -7.12 16 12 C -0.05 -1.13 5.68 -38.22 -0.22 -1.35 16 13 C 0.10 2.58 5.11 -106.70 -0.55 2.04 16 14 C -0.42 -11.10 9.19 -37.83 -0.35 -11.45 16 15 H 0.10 2.68 7.68 -52.49 -0.40 2.27 16 16 C 0.08 2.18 5.40 -17.33 -0.09 2.09 16 17 N -0.80 -20.66 13.93 55.55 0.77 -19.88 16 18 Si 0.91 20.59 24.52 -169.99 -4.17 16.42 16 19 H -0.27 -5.81 6.71 56.52 0.38 -5.43 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.24 -5.68 6.86 56.52 0.39 -5.29 16 22 C -0.25 -5.97 7.11 -39.26 -0.28 -6.25 16 23 C -0.05 -1.01 9.96 -40.01 -0.40 -1.41 16 24 C -0.32 -6.68 9.05 -39.21 -0.35 -7.03 16 25 C 0.15 3.22 6.69 -39.17 -0.26 2.96 16 26 O -0.31 -6.10 9.44 -34.33 -0.32 -6.43 16 27 C 0.03 0.46 9.81 101.05 0.99 1.46 16 28 C -0.11 -1.89 5.89 -24.88 -0.15 -2.04 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 8.13 -51.92 -0.42 0.16 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.29 6.74 8.30 -40.82 -0.34 6.41 16 37 H 0.10 2.42 4.74 -52.48 -0.25 2.17 16 38 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.10 1.82 6.27 -52.48 -0.33 1.49 16 40 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 41 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.09 1.80 6.89 -51.93 -0.36 1.44 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -30.01 359.55 -6.67 -36.68 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.34 Total: 5.22 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.03 Total: -16.31 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.77 Total: -19.88 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.32 Total: -27.55 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.01 -6.67 -36.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.610 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds