Wall clock time and date at job start Tue Mar 31 2020 12:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00261 * 2 1 4 4 O 1.20826 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99939 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.01672 * 59.93823 * 5 3 2 7 7 C 1.53866 * 110.03161 * 298.54309 * 5 3 2 8 8 C 1.54267 * 106.60016 * 240.71541 * 7 5 3 9 9 C 1.54887 * 104.31402 * 336.32667 * 8 7 5 10 10 H 1.08998 * 110.75472 * 279.69809 * 9 8 7 11 11 O 1.42889 * 110.75879 * 156.31995 * 9 8 7 12 12 C 1.35744 * 117.00042 * 91.45384 * 11 9 8 13 13 C 1.41197 * 120.28688 * 90.00056 * 12 11 9 14 14 C 1.41180 * 120.26013 * 359.95628 * 13 12 11 15 15 H 1.07998 * 120.00414 * 330.03512 * 14 13 12 16 16 C 1.39924 * 119.99693 * 150.04005 * 14 13 12 17 17 N 1.30873 * 119.99829 * 161.83904 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 341.83050 * 16 14 13 19 19 H 1.48503 * 109.46651 * 95.40992 * 18 16 14 20 20 H 1.48503 * 109.47357 * 215.40464 * 18 16 14 21 21 H 1.48494 * 109.47133 * 335.40933 * 18 16 14 22 22 C 1.40761 * 119.47344 * 179.97438 * 13 12 11 23 23 C 1.36487 * 120.02476 * 359.97438 * 22 13 12 24 24 C 1.38776 * 120.58016 * 0.02562 * 23 22 13 25 25 C 1.38704 * 120.53470 * 359.74037 * 24 23 22 26 26 O 1.36015 * 120.02304 * 180.27791 * 25 24 23 27 27 C 1.42899 * 116.99739 * 0.23940 * 26 25 24 28 28 C 1.54267 * 110.02845 * 181.37952 * 5 3 2 29 29 H 1.08998 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46817 * 299.99881 * 1 2 3 31 31 H 1.08996 * 109.47295 * 59.99371 * 1 2 3 32 32 H 1.09001 * 110.03581 * 121.42847 * 7 5 3 33 33 H 1.08998 * 110.03465 * 0.02562 * 7 5 3 34 34 H 1.08999 * 110.48408 * 95.07263 * 8 7 5 35 35 H 1.09003 * 110.48498 * 217.57925 * 8 7 5 36 36 H 0.96998 * 119.99830 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.99023 * 179.97438 * 22 13 12 38 38 H 1.08007 * 119.71507 * 179.97438 * 23 22 13 39 39 H 1.08003 * 119.73508 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47160 * 299.99250 * 27 26 25 41 41 H 1.08993 * 109.47581 * 59.99412 * 27 26 25 42 42 H 1.09001 * 109.47197 * 180.02562 * 27 26 25 43 43 H 1.09006 * 110.48313 * 261.56831 * 28 5 3 44 44 H 1.08992 * 110.49203 * 24.08034 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9655 0.7821 -0.8872 7 6 4.1294 0.6123 1.2689 8 6 4.9038 1.7073 2.0311 9 6 5.2791 2.7407 0.9401 10 1 6.1545 2.4111 0.3807 11 8 5.5006 4.0289 1.5175 12 6 6.7720 4.3280 1.8873 13 6 7.6532 4.9450 0.9727 14 6 7.2193 5.2551 -0.3345 15 1 6.4645 4.6474 -0.8113 16 6 7.7672 6.3497 -1.0123 17 7 7.6499 6.4397 -2.3126 18 14 8.6661 7.6826 -0.0611 19 1 10.1247 7.4045 -0.0777 20 1 8.4065 9.0017 -0.6920 21 1 8.1817 7.7013 1.3425 22 6 8.9677 5.2482 1.3745 23 6 9.3819 4.9464 2.6395 24 6 8.5173 4.3400 3.5398 25 6 7.2155 4.0352 3.1704 26 8 6.3751 3.4460 4.0629 27 6 6.8982 3.1741 5.3646 28 6 4.0183 2.7493 0.0344 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.8023 -0.2015 0.9985 33 1 3.3141 0.2333 1.8853 34 1 4.2689 2.1662 2.7890 35 1 5.8020 1.2916 2.4879 36 1 8.0295 7.1987 -2.7824 37 1 9.6488 5.7198 0.6816 38 1 10.3918 5.1808 2.9424 39 1 8.8595 4.1068 4.5372 40 1 7.7528 2.5028 5.2799 41 1 7.2140 4.1070 5.8315 42 1 6.1271 2.7046 5.9753 43 1 4.2715 3.0946 -0.9680 44 1 3.2395 3.3769 0.4676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:57 Heat of formation + Delta-G solvation = -165.575806 kcal Electronic energy + Delta-G solvation = -27681.463351 eV Core-core repulsion = 23756.500490 eV Total energy + Delta-G solvation = -3924.962861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80615 -40.97994 -39.36812 -38.30878 -37.56094 -36.68208 -35.36886 -31.97250 -30.88171 -30.26990 -29.37107 -28.07577 -27.97121 -26.67918 -23.60513 -23.03219 -22.68268 -21.49287 -20.87755 -19.74816 -19.00954 -18.40167 -17.88749 -17.57782 -17.51432 -17.11197 -16.68629 -16.55129 -16.26376 -15.81301 -15.26183 -15.12609 -14.66290 -14.46192 -14.33879 -14.18864 -14.16682 -13.73856 -13.43175 -13.31801 -13.04629 -12.90536 -12.65506 -12.56624 -12.43524 -12.32369 -12.27438 -11.90019 -11.84104 -11.81066 -11.75300 -11.56673 -11.43067 -11.24136 -11.09089 -10.30946 -9.44585 -8.93280 -8.79062 -6.50268 0.62957 0.83914 1.09818 1.26195 1.40283 1.49995 1.65905 2.12426 2.55148 2.62290 2.98690 3.39506 3.47779 3.57185 3.89993 4.08432 4.25476 4.27975 4.30797 4.31490 4.38453 4.42884 4.45783 4.50010 4.50532 4.53918 4.63222 4.68899 4.71262 4.80054 4.88632 4.92545 5.00899 5.01682 5.12206 5.22007 5.24957 5.33053 5.40534 5.61705 5.73773 5.90193 5.93964 6.27583 6.53949 6.66971 6.67742 6.75392 7.28225 8.14393 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.004336 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.426519 B = 6456.005452 C = 8186.348056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.078 4.078 6 H 0.138 0.862 7 C -0.097 4.097 8 C -0.126 4.126 9 C 0.083 3.917 10 H 0.051 0.949 11 O -0.320 6.320 12 C -0.065 4.065 13 C 0.084 3.916 14 C -0.456 4.456 15 H 0.060 0.940 16 C 0.050 3.950 17 N -0.839 5.839 18 Si 0.964 3.036 19 H -0.249 1.249 20 H -0.279 1.279 21 H -0.258 1.258 22 C -0.269 4.269 23 C -0.048 4.048 24 C -0.305 4.305 25 C 0.142 3.858 26 O -0.328 6.328 27 C 0.021 3.979 28 C -0.106 4.106 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.295 0.705 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.115 0.885 43 H 0.064 0.936 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 -12.693 8.796 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.097 4.097 6 H 0.156 0.844 7 C -0.135 4.135 8 C -0.164 4.164 9 C 0.026 3.974 10 H 0.069 0.931 11 O -0.237 6.237 12 C -0.111 4.111 13 C 0.081 3.919 14 C -0.485 4.485 15 H 0.078 0.922 16 C -0.165 4.165 17 N -0.464 5.464 18 Si 0.787 3.213 19 H -0.174 1.174 20 H -0.206 1.206 21 H -0.182 1.182 22 C -0.288 4.288 23 C -0.066 4.066 24 C -0.325 4.325 25 C 0.097 3.903 26 O -0.241 6.241 27 C -0.073 4.073 28 C -0.144 4.144 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.061 -12.274 8.504 15.766 hybrid contribution 0.248 0.901 -0.290 0.979 sum -4.812 -11.373 8.214 14.831 Atomic orbital electron populations 1.23582 0.74853 1.05873 1.02392 1.86497 1.24899 1.32058 1.83648 1.23866 0.92267 0.81246 0.70922 1.90663 1.67794 1.37698 1.46691 1.21622 0.86631 0.97440 1.03992 0.84410 1.22029 1.00438 0.97727 0.93268 1.22671 1.00450 0.95631 0.97662 1.23335 0.96208 0.84124 0.93701 0.93092 1.85999 1.24390 1.33499 1.79794 1.18275 0.86500 1.15297 0.90984 1.17940 0.91100 0.90980 0.91902 1.19262 1.19816 1.11968 0.97430 0.92231 1.26818 0.93924 1.00643 0.95156 1.69725 1.36907 1.30287 1.09506 0.85515 0.79519 0.76382 0.79842 1.17384 1.20586 1.18154 1.20756 0.95653 1.13655 0.98723 1.20592 0.99236 0.94652 0.92113 1.20816 0.93267 1.16108 1.02282 1.19303 0.89486 0.92576 0.88975 1.86102 1.39579 1.75204 1.23244 1.23231 1.01503 1.01155 0.81458 1.22297 0.97135 0.95111 0.99826 0.84479 0.92200 0.92204 0.87576 0.89722 0.91809 0.90993 0.89418 0.87806 0.84518 0.84029 0.91979 0.92583 0.86641 0.91732 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -8.09 10.49 -51.40 -0.54 -8.63 16 3 C 0.47 13.60 7.02 71.24 0.50 14.10 16 4 O -0.54 -19.45 15.16 21.96 0.33 -19.11 16 5 C -0.08 -2.13 3.41 -10.82 -0.04 -2.17 16 6 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 7 C -0.10 -2.31 6.42 31.32 0.20 -2.11 16 8 C -0.13 -4.01 5.70 31.67 0.18 -3.83 16 9 C 0.08 3.34 3.21 32.01 0.10 3.44 16 10 H 0.05 2.18 7.98 -2.39 -0.02 2.16 16 11 O -0.32 -15.84 9.00 -76.78 -0.69 -16.54 16 12 C -0.07 -3.23 5.68 23.15 0.13 -3.10 16 13 C 0.08 4.40 5.11 -21.21 -0.11 4.29 16 14 C -0.46 -26.00 9.19 23.40 0.22 -25.78 16 15 H 0.06 3.68 7.68 -2.91 -0.02 3.66 16 16 C 0.05 2.72 5.40 85.24 0.46 3.18 16 17 N -0.84 -46.02 13.93 21.83 0.30 -45.72 16 18 Si 0.96 43.21 24.52 68.60 1.68 44.89 16 19 H -0.25 -10.20 6.71 99.48 0.67 -9.53 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.26 -12.05 6.86 99.48 0.68 -11.36 16 22 C -0.27 -12.55 7.11 22.48 0.16 -12.39 16 23 C -0.05 -1.88 9.96 21.99 0.22 -1.66 16 24 C -0.31 -11.51 9.05 22.51 0.20 -11.31 16 25 C 0.14 6.06 6.69 22.53 0.15 6.21 16 26 O -0.33 -12.04 9.44 -79.82 -0.75 -12.79 16 27 C 0.02 0.51 9.81 113.37 1.11 1.63 16 28 C -0.11 -3.95 5.89 31.79 0.19 -3.76 16 29 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.04 8.13 -2.38 -0.02 1.02 16 31 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 1.79 7.63 -2.39 -0.02 1.77 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.30 14.52 8.30 -92.71 -0.77 13.75 16 37 H 0.10 4.77 4.74 -2.91 -0.01 4.76 16 38 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.14 4.22 6.27 -2.91 -0.02 4.20 16 40 H 0.06 1.34 7.65 -2.39 -0.02 1.32 16 41 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 42 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 44 H 0.07 2.93 6.89 -2.39 -0.02 2.91 16 Total: -1.00 -70.42 359.55 6.16 -64.26 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.95 Total: 25.28 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.88 Total: -31.64 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.30 Total: -45.72 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -1.65 Total: -57.08 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.68 Total: 44.89 kcal Total: -70.42 6.16 -64.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.314 kcal (2) G-P(sol) polarization free energy of solvation -70.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds