Wall clock time and date at job start Tue Mar 31 2020 12:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46912 * 1 3 3 C 1.46900 * 109.46842 * 2 1 4 4 C 1.46900 * 109.46880 * 239.99947 * 2 1 3 5 5 C 1.46899 * 109.47170 * 120.00164 * 2 1 3 6 6 C 1.52994 * 109.47129 * 65.57832 * 5 2 1 7 7 H 1.09001 * 109.47395 * 53.16028 * 6 5 2 8 8 C 1.50706 * 109.47171 * 173.15895 * 6 5 2 9 9 H 1.08002 * 120.00122 * 119.99974 * 8 6 5 10 10 C 1.37877 * 119.99617 * 300.00099 * 8 6 5 11 11 N 1.31511 * 119.99960 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99899 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47345 * 89.99676 * 12 10 8 14 14 H 1.48497 * 109.47340 * 210.00072 * 12 10 8 15 15 H 1.48508 * 109.46885 * 330.00190 * 12 10 8 16 16 O 1.42901 * 109.47491 * 293.15961 * 6 5 2 17 17 C 1.35704 * 117.00412 * 156.09810 * 16 6 5 18 18 C 1.38645 * 120.14830 * 5.37818 * 17 16 6 19 19 C 1.38100 * 120.09138 * 179.97438 * 18 17 16 20 20 C 1.38514 * 120.39412 * 0.02562 * 19 18 17 21 21 N 1.48008 * 119.85098 * 180.02562 * 20 19 18 22 22 O 1.21794 * 120.00502 * 359.97438 * 21 20 19 23 23 O 1.21808 * 119.99694 * 179.97438 * 21 20 19 24 24 C 1.37823 * 120.29373 * 0.02562 * 20 19 18 25 25 C 1.39710 * 119.90147 * 359.72066 * 24 20 19 26 26 C 1.43203 * 120.19130 * 180.29514 * 25 24 20 27 27 N 5.31261 * 25.72201 * 136.88068 * 2 1 3 28 28 H 1.08996 * 109.46651 * 290.17103 * 1 2 3 29 29 H 1.09001 * 109.47011 * 50.17133 * 1 2 3 30 30 H 1.08996 * 109.46738 * 170.17273 * 1 2 3 31 31 H 1.09001 * 109.47169 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47454 * 300.00032 * 3 2 1 33 33 H 1.08998 * 109.47221 * 60.00032 * 3 2 1 34 34 H 1.08994 * 109.47422 * 306.73060 * 4 2 1 35 35 H 1.09001 * 109.46939 * 66.72921 * 4 2 1 36 36 H 1.09000 * 109.46565 * 186.72464 * 4 2 1 37 37 H 1.09000 * 109.46932 * 305.58167 * 5 2 1 38 38 H 1.08997 * 109.46938 * 185.58083 * 5 2 1 39 39 H 0.97008 * 119.99722 * 179.97438 * 11 10 8 40 40 H 1.08005 * 119.95102 * 359.97438 * 18 17 16 41 41 H 1.08008 * 119.80106 * 180.02562 * 19 18 17 42 42 H 1.08006 * 120.04749 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9588 -0.6925 1.1994 6 6 1.5665 -2.1697 1.1312 7 1 1.9057 -2.5925 0.1855 8 6 2.2097 -2.9135 2.2733 9 1 1.5949 -3.4268 2.9979 10 6 3.5830 -2.9387 2.3931 11 7 4.3316 -2.3141 1.5105 12 14 4.3803 -3.8600 3.8091 13 1 4.6384 -5.2648 3.4028 14 1 5.6638 -3.2042 4.1662 15 1 3.4722 -3.8435 4.9841 16 8 0.1457 -2.2902 1.2245 17 6 -0.4136 -3.4095 0.6993 18 6 0.3916 -4.4247 0.2060 19 6 -0.1788 -5.5635 -0.3277 20 6 -1.5562 -5.7011 -0.3753 21 7 -2.1548 -6.9270 -0.9494 22 8 -1.4365 -7.8118 -1.3790 23 8 -3.3658 -7.0509 -0.9922 24 6 -2.3719 -4.7015 0.1095 25 6 -1.8079 -3.5464 0.6569 26 6 -2.6496 -2.5067 1.1682 27 7 -3.3171 -1.6830 1.5760 28 1 -0.3632 0.3544 0.9646 29 1 -0.3633 0.6582 -0.7892 30 1 -0.3633 -1.0126 -0.1754 31 1 3.0487 1.3851 -0.0005 32 1 1.5954 1.8989 -0.8900 33 1 1.5954 1.8988 0.8900 34 1 1.5004 -1.6795 -1.2617 35 1 1.6970 -0.1139 -2.0853 36 1 3.0421 -0.7979 -1.1413 37 1 1.5161 -0.2397 2.0866 38 1 3.0442 -0.6068 1.2507 39 1 5.2978 -2.3315 1.5951 40 1 1.4665 -4.3246 0.2393 41 1 0.4530 -6.3516 -0.7102 42 1 -3.4455 -4.8131 0.0707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227312111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:53 Heat of formation + Delta-G solvation = 123.853401 kcal Electronic energy + Delta-G solvation = -27903.703385 eV Core-core repulsion = 23971.813696 eV Total energy + Delta-G solvation = -3931.889689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.25889 -42.96393 -41.39083 -38.97913 -37.70316 -37.58448 -35.56237 -33.10863 -32.53455 -31.37057 -29.62786 -29.56940 -28.03070 -27.37749 -25.56207 -25.07461 -23.75875 -22.41925 -21.29203 -19.74728 -19.66061 -19.24882 -18.53906 -18.50480 -17.98643 -17.82859 -17.64732 -17.11592 -16.60145 -16.29093 -15.86054 -15.21333 -14.99003 -14.50228 -14.44923 -14.38610 -14.29028 -13.88956 -13.86561 -13.58312 -13.40512 -13.35442 -13.25358 -13.19679 -13.11018 -12.93902 -12.88821 -12.67946 -12.61630 -12.47433 -12.32557 -12.25386 -11.99131 -11.55334 -10.79195 -10.59260 -9.91481 -8.58195 -6.65167 -1.25430 -0.64713 0.19709 0.34058 0.91344 1.33928 1.45223 1.46715 1.54016 1.58686 1.72139 2.25136 2.33556 2.51351 2.72446 2.97409 3.02223 3.07115 3.30653 3.47051 3.52272 3.69597 3.84533 3.97398 4.09013 4.14966 4.20264 4.25071 4.37681 4.42374 4.45387 4.50537 4.55848 4.63522 4.69983 4.73137 4.76997 4.79552 4.99735 5.06834 5.27470 5.45542 5.59431 5.83460 6.27674 6.46977 6.50518 7.12675 8.44756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.259 5.259 3 C -0.043 4.043 4 C -0.049 4.049 5 C 0.008 3.992 6 C 0.191 3.809 7 H 0.082 0.918 8 C -0.555 4.555 9 H 0.060 0.940 10 C 0.073 3.927 11 N -0.881 5.881 12 Si 0.919 3.081 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.284 1.284 16 O -0.300 6.300 17 C 0.248 3.752 18 C -0.184 4.184 19 C 0.020 3.980 20 C -0.097 4.097 21 N 0.037 4.963 22 O -0.180 6.180 23 O -0.187 6.187 24 C 0.040 3.960 25 C -0.067 4.067 26 C 0.281 3.719 27 N -0.431 5.431 28 H 0.108 0.892 29 H 0.141 0.859 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.157 0.843 39 H 0.279 0.721 40 H 0.181 0.819 41 H 0.173 0.827 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 14.749 -9.711 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 N 0.084 4.916 3 C -0.184 4.184 4 C -0.190 4.190 5 C -0.113 4.113 6 C 0.137 3.863 7 H 0.100 0.900 8 C -0.593 4.593 9 H 0.079 0.921 10 C -0.133 4.133 11 N -0.518 5.518 12 Si 0.749 3.251 13 H -0.211 1.211 14 H -0.215 1.215 15 H -0.210 1.210 16 O -0.211 6.211 17 C 0.195 3.805 18 C -0.203 4.203 19 C 0.000 4.000 20 C -0.181 4.181 21 N 0.551 4.449 22 O -0.393 6.393 23 O -0.398 6.398 24 C 0.018 3.982 25 C -0.072 4.072 26 C -0.034 4.034 27 N -0.107 5.107 28 H 0.127 0.873 29 H 0.159 0.841 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.175 0.825 39 H 0.089 0.911 40 H 0.198 0.802 41 H 0.190 0.810 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.477 16.846 -8.745 18.987 hybrid contribution 0.914 -1.844 1.088 2.328 sum 0.437 15.002 -7.657 16.848 Atomic orbital electron populations 1.24339 0.76896 1.08665 1.09066 1.45998 1.14757 1.15843 1.15047 1.24226 1.05680 0.78764 1.09700 1.24240 1.05841 1.01744 0.87200 1.24347 1.06981 0.93003 0.86952 1.20787 0.72512 0.92889 1.00066 0.90045 1.21383 0.91493 1.33967 1.12425 0.92141 1.24789 0.97315 0.94789 0.96357 1.69483 1.06954 1.41153 1.34216 0.86118 0.78215 0.79472 0.81283 1.21118 1.21541 1.20993 1.86107 1.27091 1.35477 1.72438 1.19136 0.89912 0.86339 0.85066 1.21549 1.02928 0.92520 1.03312 1.21260 0.91233 0.97832 0.89674 1.20741 0.94463 0.88385 1.14494 1.43775 1.00765 1.02387 0.98013 1.94562 1.60263 1.35045 1.49423 1.94561 0.97257 1.86154 1.61825 1.20811 1.02276 0.87605 0.87486 1.14730 0.87930 0.93230 1.11312 1.24937 0.92833 0.92655 0.92996 1.81351 1.08858 1.10910 1.09556 0.87315 0.84057 0.87814 0.86335 0.84080 0.86442 0.87769 0.83642 0.86228 0.86537 0.82533 0.91129 0.80181 0.80957 0.80719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.16 7.21 127.69 0.92 2.08 16 2 N -0.26 6.30 0.05 ******* -0.07 6.23 16 3 C -0.04 1.26 7.98 127.69 1.02 2.28 16 4 C -0.05 1.25 7.39 127.69 0.94 2.19 16 5 C 0.01 -0.11 3.69 86.30 0.32 0.21 16 6 C 0.19 -1.05 1.19 29.85 0.04 -1.02 16 7 H 0.08 -0.67 4.20 -2.39 -0.01 -0.68 16 8 C -0.55 -3.91 7.85 25.60 0.20 -3.71 16 9 H 0.06 0.75 7.81 -2.91 -0.02 0.72 16 10 C 0.07 0.80 5.28 84.66 0.45 1.25 16 11 N -0.88 -7.82 11.29 21.45 0.24 -7.58 16 12 Si 0.92 13.61 29.54 68.60 2.03 15.63 16 13 H -0.28 -4.94 7.11 99.48 0.71 -4.24 16 14 H -0.29 -4.89 7.11 99.48 0.71 -4.18 16 15 H -0.28 -4.98 7.11 99.48 0.71 -4.27 16 16 O -0.30 2.02 6.22 -90.24 -0.56 1.46 16 17 C 0.25 -1.48 6.16 22.84 0.14 -1.34 16 18 C -0.18 1.07 8.68 22.33 0.19 1.27 16 19 C 0.02 -0.08 9.54 22.30 0.21 0.13 16 20 C -0.10 0.08 6.84 36.35 0.25 0.33 16 21 N 0.04 0.24 4.45 -46.55 -0.21 0.03 16 22 O -0.18 -1.65 18.43 18.89 0.35 -1.30 16 23 O -0.19 -1.70 18.43 18.88 0.35 -1.36 16 24 C 0.04 -0.16 9.26 22.53 0.21 0.05 16 25 C -0.07 0.34 5.75 -21.21 -0.12 0.22 16 26 C 0.28 -0.51 14.87 88.33 1.31 0.81 16 27 N -0.43 -1.27 18.54 19.00 0.35 -0.92 16 28 H 0.11 -2.35 7.91 -2.39 -0.02 -2.37 16 29 H 0.14 -4.25 7.99 -2.39 -0.02 -4.27 16 30 H 0.10 -2.09 5.20 -2.39 -0.01 -2.10 16 31 H 0.12 -3.32 8.11 -2.39 -0.02 -3.34 16 32 H 0.14 -4.84 8.02 -2.39 -0.02 -4.85 16 33 H 0.12 -3.41 8.14 -2.39 -0.02 -3.43 16 34 H 0.10 -2.42 6.12 -2.39 -0.01 -2.43 16 35 H 0.15 -4.64 8.06 -2.39 -0.02 -4.66 16 36 H 0.12 -2.68 8.09 -2.39 -0.02 -2.70 16 37 H 0.12 -1.45 7.95 -2.39 -0.02 -1.47 16 38 H 0.16 -1.33 5.85 -2.39 -0.01 -1.34 16 39 H 0.28 3.12 8.31 -92.70 -0.77 2.35 16 40 H 0.18 -0.97 5.67 -2.91 -0.02 -0.98 16 41 H 0.17 -1.02 7.59 -2.91 -0.02 -1.04 16 42 H 0.18 -0.96 7.59 -2.91 -0.02 -0.98 16 Total: 0.00 -38.94 352.59 9.62 -29.32 By element: Atomic # 1 Polarization: -47.32 SS G_CDS: 1.06 Total: -46.26 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.08 Total: 4.74 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: 0.32 Total: -2.23 kcal Atomic # 8 Polarization: -1.33 SS G_CDS: 0.13 Total: -1.20 kcal Atomic # 14 Polarization: 13.61 SS G_CDS: 2.03 Total: 15.63 kcal Total: -38.94 9.62 -29.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227312111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.171 kcal (2) G-P(sol) polarization free energy of solvation -38.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds