Wall clock time and date at job start Tue Mar 31 2020 12:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 109.46826 * 2 1 4 4 C 1.46894 * 109.47330 * 120.00352 * 2 1 3 5 5 C 1.46899 * 109.46868 * 240.00466 * 2 1 3 6 6 C 1.53006 * 109.47169 * 62.80843 * 5 2 1 7 7 H 1.09000 * 109.46988 * 175.54404 * 6 5 2 8 8 C 1.50691 * 109.47242 * 295.54340 * 6 5 2 9 9 H 1.08001 * 119.99998 * 115.18614 * 8 6 5 10 10 C 1.37882 * 120.00281 * 295.18795 * 8 6 5 11 11 N 1.31515 * 119.99740 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00286 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46743 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46953 * 119.99950 * 12 10 8 15 15 H 1.48498 * 109.46983 * 239.99918 * 12 10 8 16 16 O 1.42902 * 109.47025 * 55.54629 * 6 5 2 17 17 C 1.35708 * 117.00311 * 110.25331 * 16 6 5 18 18 C 1.40203 * 120.14989 * 275.52695 * 17 16 6 19 19 C 1.43203 * 120.18990 * 359.97332 * 18 17 16 20 20 N 3.52231 * 166.67459 * 301.91448 * 2 1 3 21 21 C 1.39675 * 119.61683 * 179.72269 * 18 17 16 22 22 C 1.37870 * 119.89836 * 0.52858 * 21 18 17 23 23 C 1.38474 * 120.29367 * 359.76405 * 22 21 18 24 24 C 1.38146 * 120.39574 * 359.95698 * 23 22 21 25 25 N 1.48011 * 119.95637 * 180.02562 * 24 23 22 26 26 O 1.21805 * 119.99925 * 359.97438 * 25 24 23 27 27 O 1.21804 * 120.00144 * 179.97438 * 25 24 23 28 28 H 1.08992 * 109.47242 * 42.17614 * 1 2 3 29 29 H 1.09002 * 109.46919 * 162.18105 * 1 2 3 30 30 H 1.09004 * 109.46946 * 282.17215 * 1 2 3 31 31 H 1.08998 * 109.47088 * 77.99933 * 3 2 1 32 32 H 1.09004 * 109.47467 * 197.99652 * 3 2 1 33 33 H 1.09005 * 109.47712 * 318.00185 * 3 2 1 34 34 H 1.08997 * 109.47424 * 59.99811 * 4 2 1 35 35 H 1.08999 * 109.47123 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47188 * 300.00279 * 4 2 1 37 37 H 1.09004 * 109.47114 * 182.80679 * 5 2 1 38 38 H 1.09003 * 109.47353 * 302.81231 * 5 2 1 39 39 H 0.96996 * 119.99926 * 180.02562 * 11 10 8 40 40 H 1.07992 * 120.04936 * 180.24715 * 21 18 17 41 41 H 1.07998 * 119.84958 * 179.74368 * 22 21 18 42 42 H 1.08004 * 119.79814 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 1.1993 5 6 1.9586 -0.6924 -1.1995 6 6 1.5071 0.0686 -2.4477 7 1 1.9360 -0.3996 -3.3337 8 6 0.0034 0.0352 -2.5399 9 1 -0.5632 0.9509 -2.4573 10 6 -0.6492 -1.1645 -2.7297 11 7 0.0407 -2.2797 -2.8298 12 14 -2.5133 -1.2060 -2.8433 13 1 -3.0487 0.1718 -2.7006 14 1 -2.9167 -1.7593 -4.1610 15 1 -3.0562 -2.0634 -1.7592 16 8 1.9493 1.4250 -2.3646 17 6 2.9296 1.8071 -3.2217 18 6 4.2748 1.5762 -2.9010 19 6 4.6215 0.9366 -1.6676 20 7 4.8965 0.4292 -0.6891 21 6 5.2745 1.9689 -3.7940 22 6 4.9341 2.5894 -4.9771 23 6 3.6045 2.8210 -5.2871 24 6 2.6056 2.4325 -4.4154 25 7 1.1876 2.6844 -4.7568 26 8 0.9021 3.2344 -5.8054 27 8 0.3062 2.3418 -3.9890 28 1 -0.3633 0.7615 -0.6899 29 1 -0.3633 -0.9784 -0.3145 30 1 -0.3633 0.2167 1.0046 31 1 1.8783 1.7987 1.0052 32 1 3.0013 1.4018 -0.3175 33 1 1.3597 1.9822 -0.6876 34 1 1.5954 -1.7202 1.1993 35 1 3.0487 -0.6929 1.1991 36 1 1.5954 -0.1788 2.0894 37 1 3.0475 -0.7362 -1.1747 38 1 1.5547 -1.7045 -1.2252 39 1 -0.4183 -3.1236 -2.9637 40 1 6.3126 1.7908 -3.5558 41 1 5.7079 2.8964 -5.6651 42 1 3.3469 3.3081 -6.2160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228769134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:06 Heat of formation + Delta-G solvation = 150.245243 kcal Electronic energy + Delta-G solvation = -29536.293566 eV Core-core repulsion = 25605.548313 eV Total energy + Delta-G solvation = -3930.745253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.46929 -42.82638 -41.22805 -38.94309 -38.14087 -37.03700 -35.20993 -33.45360 -32.47158 -31.13323 -30.18966 -29.96464 -27.86492 -27.42699 -25.65366 -24.57649 -23.95190 -22.96045 -21.20995 -19.71197 -19.38987 -18.91621 -18.65225 -18.34906 -18.25440 -18.10462 -17.54268 -17.31626 -16.59000 -16.35762 -15.85531 -15.21253 -15.08671 -15.00895 -14.88814 -14.77360 -14.38464 -14.09623 -14.04367 -13.85243 -13.62659 -13.52695 -13.48728 -13.27147 -12.98668 -12.87421 -12.57682 -12.21913 -12.10640 -11.88090 -11.69467 -11.58738 -11.46230 -10.95236 -10.77788 -10.41659 -10.20705 -7.98403 -6.05775 -1.27162 -0.95996 0.34830 0.48567 0.57201 1.03384 1.28491 1.82969 1.96532 2.12061 2.16785 2.18397 2.26181 2.53785 2.58252 2.65828 2.87120 3.16243 3.26045 3.33575 3.34520 3.41962 3.44586 3.56394 3.69201 3.72956 3.74668 3.85051 3.92876 3.99094 4.13453 4.26444 4.36985 4.37708 4.40581 4.53630 4.61251 4.81160 4.86049 4.92282 5.57506 5.79039 5.90001 6.06255 6.16688 6.94928 7.16972 7.64284 9.07350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.248 5.248 3 C -0.041 4.041 4 C -0.043 4.043 5 C -0.021 4.021 6 C 0.210 3.790 7 H 0.068 0.932 8 C -0.542 4.542 9 H 0.104 0.896 10 C 0.069 3.931 11 N -0.883 5.883 12 Si 0.904 3.096 13 H -0.257 1.257 14 H -0.272 1.272 15 H -0.277 1.277 16 O -0.328 6.328 17 C 0.220 3.780 18 C -0.075 4.075 19 C 0.267 3.733 20 N -0.402 5.402 21 C -0.007 4.007 22 C -0.128 4.128 23 C -0.012 4.012 24 C -0.063 4.063 25 N 0.021 4.979 26 O -0.193 6.193 27 O -0.074 6.074 28 H 0.154 0.846 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.283 0.717 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.965 4.446 7.758 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 N 0.094 4.906 3 C -0.183 4.183 4 C -0.185 4.185 5 C -0.142 4.142 6 C 0.157 3.843 7 H 0.086 0.914 8 C -0.578 4.578 9 H 0.122 0.878 10 C -0.137 4.137 11 N -0.518 5.518 12 Si 0.729 3.271 13 H -0.181 1.181 14 H -0.197 1.197 15 H -0.202 1.202 16 O -0.245 6.245 17 C 0.170 3.830 18 C -0.079 4.079 19 C -0.047 4.047 20 N -0.078 5.078 21 C -0.028 4.028 22 C -0.146 4.146 23 C -0.031 4.031 24 C -0.146 4.146 25 N 0.544 4.456 26 O -0.395 6.395 27 O -0.307 6.307 28 H 0.172 0.828 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.162 0.838 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.174 0.826 39 H 0.094 0.906 40 H 0.173 0.827 41 H 0.179 0.821 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.006 3.469 9.413 14.169 hybrid contribution -0.965 -0.225 -0.867 1.317 sum 9.041 3.244 8.546 12.857 Atomic orbital electron populations 1.24764 0.75209 1.11964 1.05704 1.45682 1.16484 1.14230 1.14187 1.24468 1.05308 0.81624 1.06859 1.24047 1.04679 1.02002 0.87795 1.24832 1.00746 1.03155 0.85497 1.20657 0.97611 0.73463 0.92586 0.91405 1.21292 0.87544 0.95521 1.53473 0.87817 1.25024 1.00732 0.94772 0.93221 1.69714 1.37458 0.99448 1.45165 0.86237 0.81659 0.79737 0.79476 1.18069 1.19672 1.20203 1.86211 1.51516 1.33453 1.53361 1.18332 0.87569 0.90398 0.86651 1.16219 0.92534 1.07145 0.92050 1.25097 0.93541 0.93400 0.92631 1.81282 1.06628 1.09044 1.10840 1.21576 0.99628 0.90373 0.91202 1.21200 0.95637 1.00181 0.97619 1.21405 0.91353 0.91975 0.98393 1.21450 0.83690 1.12005 0.97503 1.43275 1.02268 0.99239 1.00803 1.94572 1.87693 1.43664 1.13577 1.94721 1.40554 1.49544 1.45919 0.82830 0.86267 0.89801 0.88283 0.88548 0.83771 0.86716 0.87342 0.86995 0.89651 0.82615 0.90637 0.82661 0.82077 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.19 6.89 60.07 0.41 0.60 16 2 N -0.25 1.50 0.05 -395.62 -0.02 1.48 16 3 C -0.04 0.26 6.93 60.06 0.42 0.68 16 4 C -0.04 0.37 7.88 60.06 0.47 0.84 16 5 C -0.02 0.05 3.81 -3.82 -0.01 0.03 16 6 C 0.21 0.20 2.18 -27.88 -0.06 0.14 16 7 H 0.07 0.28 7.74 -51.93 -0.40 -0.12 16 8 C -0.54 -1.93 3.97 -34.44 -0.14 -2.07 16 9 H 0.10 0.44 5.72 -52.49 -0.30 0.14 16 10 C 0.07 0.40 3.88 -17.82 -0.07 0.34 16 11 N -0.88 -6.32 11.67 55.43 0.65 -5.67 16 12 Si 0.90 5.85 29.54 -169.99 -5.02 0.83 16 13 H -0.26 -1.71 7.11 56.52 0.40 -1.30 16 14 H -0.27 -2.46 7.11 56.52 0.40 -2.06 16 15 H -0.28 -1.81 7.11 56.52 0.40 -1.41 16 16 O -0.33 0.27 3.19 -40.97 -0.13 0.14 16 17 C 0.22 -0.24 5.48 -38.71 -0.21 -0.45 16 18 C -0.07 0.25 5.75 -106.70 -0.61 -0.37 16 19 C 0.27 -0.79 10.90 -22.47 -0.24 -1.03 16 20 N -0.40 0.83 16.14 41.84 0.68 1.51 16 21 C -0.01 0.04 9.76 -39.18 -0.38 -0.34 16 22 C -0.13 0.71 10.02 -39.63 -0.40 0.31 16 23 C -0.01 0.03 9.54 -39.53 -0.38 -0.35 16 24 C -0.06 -0.02 6.86 -79.85 -0.55 -0.56 16 25 N 0.02 0.09 4.45 34.01 0.15 0.24 16 26 O -0.19 -1.05 18.44 -29.46 -0.54 -1.59 16 27 O -0.07 -0.39 14.32 -36.50 -0.52 -0.92 16 28 H 0.15 -0.52 4.68 -51.93 -0.24 -0.76 16 29 H 0.12 -0.33 6.21 -51.93 -0.32 -0.65 16 30 H 0.08 -0.68 7.83 -51.93 -0.41 -1.09 16 31 H 0.10 -0.88 7.83 -51.93 -0.41 -1.29 16 32 H 0.10 -0.50 3.47 -51.93 -0.18 -0.68 16 33 H 0.14 -0.72 5.38 -51.93 -0.28 -1.00 16 34 H 0.11 -0.99 8.14 -51.93 -0.42 -1.41 16 35 H 0.11 -0.86 8.13 -51.93 -0.42 -1.28 16 36 H 0.11 -1.19 7.89 -51.93 -0.41 -1.60 16 37 H 0.09 -0.23 4.93 -51.93 -0.26 -0.49 16 38 H 0.16 -0.03 6.17 -51.93 -0.32 -0.36 16 39 H 0.28 2.24 8.31 -40.82 -0.34 1.90 16 40 H 0.16 -1.24 8.06 -52.49 -0.42 -1.66 16 41 H 0.16 -1.33 8.06 -52.49 -0.42 -1.75 16 42 H 0.17 -0.59 7.59 -52.48 -0.40 -0.99 16 LS Contribution 329.13 15.07 4.96 4.96 Total: 0.00 -12.83 329.13 -6.31 -19.14 By element: Atomic # 1 Polarization: -13.13 SS G_CDS: -4.75 Total: -17.88 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.75 Total: -2.23 kcal Atomic # 7 Polarization: -3.90 SS G_CDS: 1.45 Total: -2.44 kcal Atomic # 8 Polarization: -1.17 SS G_CDS: -1.20 Total: -2.37 kcal Atomic # 14 Polarization: 5.85 SS G_CDS: -5.02 Total: 0.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -12.83 -6.31 -19.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228769134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.386 kcal (2) G-P(sol) polarization free energy of solvation -12.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds