Wall clock time and date at job start Tue Mar 31 2020 12:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 109.46826 * 2 1 4 4 C 1.46894 * 109.47330 * 120.00352 * 2 1 3 5 5 C 1.46899 * 109.46868 * 240.00466 * 2 1 3 6 6 C 1.53006 * 109.47169 * 62.80843 * 5 2 1 7 7 H 1.09000 * 109.46988 * 175.54404 * 6 5 2 8 8 C 1.50691 * 109.47242 * 295.54340 * 6 5 2 9 9 H 1.08001 * 119.99998 * 115.18614 * 8 6 5 10 10 C 1.37882 * 120.00281 * 295.18795 * 8 6 5 11 11 N 1.31515 * 119.99740 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00286 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46743 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46953 * 119.99950 * 12 10 8 15 15 H 1.48498 * 109.46983 * 239.99918 * 12 10 8 16 16 O 1.42902 * 109.47025 * 55.54629 * 6 5 2 17 17 C 1.35708 * 117.00311 * 110.25331 * 16 6 5 18 18 C 1.40203 * 120.14989 * 275.52695 * 17 16 6 19 19 C 1.43203 * 120.18990 * 359.97332 * 18 17 16 20 20 N 3.52231 * 166.67459 * 301.91448 * 2 1 3 21 21 C 1.39675 * 119.61683 * 179.72269 * 18 17 16 22 22 C 1.37870 * 119.89836 * 0.52858 * 21 18 17 23 23 C 1.38474 * 120.29367 * 359.76405 * 22 21 18 24 24 C 1.38146 * 120.39574 * 359.95698 * 23 22 21 25 25 N 1.48011 * 119.95637 * 180.02562 * 24 23 22 26 26 O 1.21805 * 119.99925 * 359.97438 * 25 24 23 27 27 O 1.21804 * 120.00144 * 179.97438 * 25 24 23 28 28 H 1.08992 * 109.47242 * 42.17614 * 1 2 3 29 29 H 1.09002 * 109.46919 * 162.18105 * 1 2 3 30 30 H 1.09004 * 109.46946 * 282.17215 * 1 2 3 31 31 H 1.08998 * 109.47088 * 77.99933 * 3 2 1 32 32 H 1.09004 * 109.47467 * 197.99652 * 3 2 1 33 33 H 1.09005 * 109.47712 * 318.00185 * 3 2 1 34 34 H 1.08997 * 109.47424 * 59.99811 * 4 2 1 35 35 H 1.08999 * 109.47123 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47188 * 300.00279 * 4 2 1 37 37 H 1.09004 * 109.47114 * 182.80679 * 5 2 1 38 38 H 1.09003 * 109.47353 * 302.81231 * 5 2 1 39 39 H 0.96996 * 119.99926 * 180.02562 * 11 10 8 40 40 H 1.07992 * 120.04936 * 180.24715 * 21 18 17 41 41 H 1.07998 * 119.84958 * 179.74368 * 22 21 18 42 42 H 1.08004 * 119.79814 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 1.1993 5 6 1.9586 -0.6924 -1.1995 6 6 1.5071 0.0686 -2.4477 7 1 1.9360 -0.3996 -3.3337 8 6 0.0034 0.0352 -2.5399 9 1 -0.5632 0.9509 -2.4573 10 6 -0.6492 -1.1645 -2.7297 11 7 0.0407 -2.2797 -2.8298 12 14 -2.5133 -1.2060 -2.8433 13 1 -3.0487 0.1718 -2.7006 14 1 -2.9167 -1.7593 -4.1610 15 1 -3.0562 -2.0634 -1.7592 16 8 1.9493 1.4250 -2.3646 17 6 2.9296 1.8071 -3.2217 18 6 4.2748 1.5762 -2.9010 19 6 4.6215 0.9366 -1.6676 20 7 4.8965 0.4292 -0.6891 21 6 5.2745 1.9689 -3.7940 22 6 4.9341 2.5894 -4.9771 23 6 3.6045 2.8210 -5.2871 24 6 2.6056 2.4325 -4.4154 25 7 1.1876 2.6844 -4.7568 26 8 0.9021 3.2344 -5.8054 27 8 0.3062 2.3418 -3.9890 28 1 -0.3633 0.7615 -0.6899 29 1 -0.3633 -0.9784 -0.3145 30 1 -0.3633 0.2167 1.0046 31 1 1.8783 1.7987 1.0052 32 1 3.0013 1.4018 -0.3175 33 1 1.3597 1.9822 -0.6876 34 1 1.5954 -1.7202 1.1993 35 1 3.0487 -0.6929 1.1991 36 1 1.5954 -0.1788 2.0894 37 1 3.0475 -0.7362 -1.1747 38 1 1.5547 -1.7045 -1.2252 39 1 -0.4183 -3.1236 -2.9637 40 1 6.3126 1.7908 -3.5558 41 1 5.7079 2.8964 -5.6651 42 1 3.3469 3.3081 -6.2160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228769134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:05 Heat of formation + Delta-G solvation = 151.601217 kcal Electronic energy + Delta-G solvation = -29536.234767 eV Core-core repulsion = 25605.548313 eV Total energy + Delta-G solvation = -3930.686454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.29910 -42.84618 -41.08811 -38.80845 -37.92393 -37.32191 -35.49542 -33.30065 -32.41215 -31.04702 -29.75314 -29.54826 -27.80983 -27.50527 -25.50432 -24.51254 -23.79144 -22.84748 -21.17868 -19.69777 -19.48778 -19.04244 -18.61095 -18.41776 -18.01690 -17.78476 -17.28678 -17.17402 -16.68874 -16.08833 -15.95797 -15.07727 -14.87621 -14.84968 -14.77401 -14.45851 -13.91610 -13.90270 -13.82220 -13.48529 -13.45154 -13.36750 -13.12830 -13.10245 -12.90022 -12.77628 -12.68429 -12.54936 -12.43988 -12.15571 -12.07586 -11.97515 -11.62795 -10.99238 -10.74593 -10.67627 -10.20105 -8.47073 -6.46553 -1.23926 -0.77355 0.26183 0.44209 0.99356 1.24862 1.35117 1.49843 1.55571 1.58297 1.99586 2.30937 2.34230 2.46124 2.82736 2.96049 3.07888 3.12233 3.42877 3.47814 3.68318 3.79463 3.85609 3.90420 4.02603 4.11642 4.18684 4.30256 4.35500 4.51455 4.53778 4.58521 4.65827 4.72226 4.74386 4.77099 4.85989 4.95555 5.17255 5.23403 5.34423 5.64580 5.67898 5.99820 6.06718 6.57401 6.78055 7.20100 8.58054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.242 5.242 3 C -0.041 4.041 4 C -0.045 4.045 5 C -0.002 4.002 6 C 0.217 3.783 7 H 0.033 0.967 8 C -0.512 4.512 9 H 0.096 0.904 10 C 0.053 3.947 11 N -0.903 5.903 12 Si 0.922 3.078 13 H -0.260 1.260 14 H -0.311 1.311 15 H -0.274 1.274 16 O -0.322 6.322 17 C 0.203 3.797 18 C -0.071 4.071 19 C 0.276 3.724 20 N -0.412 5.412 21 C 0.013 3.987 22 C -0.107 4.107 23 C -0.016 4.016 24 C -0.087 4.087 25 N 0.024 4.976 26 O -0.224 6.224 27 O -0.112 6.112 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.138 0.862 39 H 0.272 0.728 40 H 0.193 0.807 41 H 0.201 0.799 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.295 5.493 9.539 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 N 0.101 4.899 3 C -0.182 4.182 4 C -0.186 4.186 5 C -0.125 4.125 6 C 0.163 3.837 7 H 0.051 0.949 8 C -0.549 4.549 9 H 0.114 0.886 10 C -0.150 4.150 11 N -0.541 5.541 12 Si 0.751 3.249 13 H -0.184 1.184 14 H -0.239 1.239 15 H -0.200 1.200 16 O -0.239 6.239 17 C 0.154 3.846 18 C -0.076 4.076 19 C -0.038 4.038 20 N -0.088 5.088 21 C -0.007 4.007 22 C -0.125 4.125 23 C -0.036 4.036 24 C -0.171 4.171 25 N 0.539 4.461 26 O -0.423 6.423 27 O -0.340 6.340 28 H 0.149 0.851 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.163 0.837 37 H 0.112 0.888 38 H 0.155 0.845 39 H 0.082 0.918 40 H 0.211 0.789 41 H 0.218 0.782 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 13.292 4.542 11.222 17.979 hybrid contribution -1.844 -0.424 -1.452 2.385 sum 11.449 4.118 9.770 15.604 Atomic orbital electron populations 1.24592 0.75657 1.09734 1.07684 1.45547 1.16025 1.14550 1.13794 1.24473 1.04211 0.80919 1.08630 1.24235 1.04682 1.02378 0.87277 1.24269 1.00984 1.01603 0.85598 1.20252 0.95665 0.74596 0.93170 0.94895 1.21361 0.89353 0.94230 1.49990 0.88622 1.25025 1.00001 0.95361 0.94586 1.69772 1.36809 0.99154 1.48358 0.86026 0.82818 0.78952 0.77134 1.18390 1.23919 1.19959 1.86243 1.52250 1.32222 1.53181 1.18526 0.88469 0.91107 0.86524 1.16260 0.91795 1.07075 0.92460 1.25036 0.93215 0.93101 0.92469 1.81295 1.07067 1.09353 1.11080 1.22101 1.00765 0.87818 0.90017 1.21662 0.94800 0.98167 0.97850 1.21708 0.91992 0.91846 0.98045 1.21658 0.81321 1.14807 0.99330 1.43775 1.03960 0.98228 1.00096 1.94530 1.88788 1.44655 1.14309 1.94692 1.42522 1.50717 1.46096 0.85055 0.88590 0.85564 0.84655 0.89361 0.85471 0.86572 0.87415 0.83704 0.88759 0.84459 0.91841 0.78936 0.78169 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.36 6.89 127.69 0.88 1.24 16 2 N -0.24 3.01 0.05 ******* -0.07 2.94 16 3 C -0.04 0.56 6.93 127.69 0.88 1.45 16 4 C -0.04 0.84 7.88 127.69 1.01 1.85 16 5 C 0.00 0.01 3.81 86.31 0.33 0.33 16 6 C 0.22 0.87 2.18 29.85 0.07 0.94 16 7 H 0.03 0.37 7.74 -2.39 -0.02 0.35 16 8 C -0.51 -5.13 3.97 25.60 0.10 -5.03 16 9 H 0.10 1.12 5.72 -2.91 -0.02 1.10 16 10 C 0.05 0.79 3.88 84.66 0.33 1.12 16 11 N -0.90 -15.80 11.67 21.45 0.25 -15.55 16 12 Si 0.92 14.94 29.54 68.60 2.03 16.97 16 13 H -0.26 -4.18 7.11 99.48 0.71 -3.48 16 14 H -0.31 -7.07 7.11 99.48 0.71 -6.36 16 15 H -0.27 -4.20 7.11 99.48 0.71 -3.50 16 16 O -0.32 0.06 3.19 -69.11 -0.22 -0.16 16 17 C 0.20 -0.31 5.48 22.84 0.13 -0.19 16 18 C -0.07 0.57 5.75 -21.21 -0.12 0.44 16 19 C 0.28 -2.02 10.90 88.33 0.96 -1.05 16 20 N -0.41 2.34 16.14 19.00 0.31 2.65 16 21 C 0.01 -0.19 9.76 22.53 0.22 0.03 16 22 C -0.11 1.51 10.02 22.24 0.22 1.73 16 23 C -0.02 0.10 9.54 22.30 0.21 0.31 16 24 C -0.09 -0.15 6.86 36.44 0.25 0.10 16 25 N 0.02 0.26 4.45 -46.31 -0.21 0.06 16 26 O -0.22 -3.11 18.44 18.88 0.35 -2.76 16 27 O -0.11 -1.59 14.32 25.61 0.37 -1.22 16 28 H 0.13 -0.70 4.68 -2.39 -0.01 -0.71 16 29 H 0.10 -0.40 6.21 -2.39 -0.01 -0.42 16 30 H 0.13 -2.30 7.83 -2.38 -0.02 -2.31 16 31 H 0.14 -2.79 7.83 -2.39 -0.02 -2.81 16 32 H 0.09 -1.01 3.47 -2.38 -0.01 -1.02 16 33 H 0.13 -1.22 5.38 -2.38 -0.01 -1.23 16 34 H 0.12 -2.13 8.14 -2.39 -0.02 -2.15 16 35 H 0.11 -1.91 8.13 -2.39 -0.02 -1.93 16 36 H 0.14 -3.60 7.89 -2.39 -0.02 -3.62 16 37 H 0.09 -0.49 4.93 -2.38 -0.01 -0.51 16 38 H 0.14 0.18 6.17 -2.39 -0.01 0.16 16 39 H 0.27 5.25 8.31 -92.71 -0.77 4.48 16 40 H 0.19 -4.06 8.06 -2.91 -0.02 -4.08 16 41 H 0.20 -4.30 8.06 -2.91 -0.02 -4.33 16 42 H 0.17 -1.23 7.59 -2.91 -0.02 -1.25 16 Total: 0.00 -36.74 329.13 9.35 -27.39 By element: Atomic # 1 Polarization: -34.67 SS G_CDS: 1.08 Total: -33.59 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.47 Total: 3.29 kcal Atomic # 7 Polarization: -10.19 SS G_CDS: 0.28 Total: -9.91 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.49 Total: -4.15 kcal Atomic # 14 Polarization: 14.94 SS G_CDS: 2.03 Total: 16.97 kcal Total: -36.74 9.35 -27.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228769134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.995 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds