Wall clock time and date at job start Tue Mar 31 2020 12:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 109.46711 * 2 1 4 4 C 1.46895 * 109.47230 * 120.00056 * 2 1 3 5 5 C 1.46901 * 109.47258 * 240.00468 * 2 1 3 6 6 C 1.52992 * 109.47344 * 63.56073 * 5 2 1 7 7 H 1.09005 * 109.47151 * 52.71651 * 6 5 2 8 8 C 1.50700 * 109.46985 * 172.71312 * 6 5 2 9 9 H 1.08003 * 120.00280 * 239.99875 * 8 6 5 10 10 C 1.37877 * 119.99926 * 60.00139 * 8 6 5 11 11 N 1.31521 * 119.99909 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 120.00243 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46745 * 60.00349 * 12 10 8 14 14 H 1.48495 * 109.46975 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47161 * 300.00467 * 12 10 8 16 16 O 1.42892 * 109.47397 * 292.71405 * 6 5 2 17 17 C 1.35909 * 117.00014 * 156.28231 * 16 6 5 18 18 C 1.38857 * 119.98451 * 5.14432 * 17 16 6 19 19 C 1.38249 * 120.25328 * 179.72160 * 18 17 16 20 20 C 1.37997 * 120.20983 * 0.54496 * 19 18 17 21 21 N 1.48015 * 120.01791 * 179.70507 * 20 19 18 22 22 O 1.21803 * 120.00072 * 0.02893 * 21 20 19 23 23 O 1.21806 * 120.00011 * 180.02562 * 21 20 19 24 24 C 1.39616 * 119.95827 * 359.72871 * 20 19 18 25 25 C 1.43202 * 120.12192 * 180.02562 * 24 20 19 26 26 N 8.08681 * 36.16002 * 297.12756 * 2 1 3 27 27 C 1.38438 * 119.98095 * 185.40910 * 17 16 6 28 28 H 1.08999 * 109.47170 * 49.55912 * 1 2 3 29 29 H 1.09000 * 109.46870 * 169.54957 * 1 2 3 30 30 H 1.08994 * 109.47540 * 289.55221 * 1 2 3 31 31 H 1.09004 * 109.47305 * 60.00188 * 3 2 1 32 32 H 1.09005 * 109.46845 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47733 * 299.99756 * 3 2 1 34 34 H 1.08992 * 109.47323 * 60.00041 * 4 2 1 35 35 H 1.09002 * 109.47331 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47084 * 299.99995 * 4 2 1 37 37 H 1.09003 * 109.47042 * 183.56573 * 5 2 1 38 38 H 1.09003 * 109.46903 * 303.55715 * 5 2 1 39 39 H 0.96994 * 119.99591 * 179.97438 * 11 10 8 40 40 H 1.08002 * 119.86990 * 359.97438 * 18 17 16 41 41 H 1.07998 * 119.89102 * 180.27824 * 19 18 17 42 42 H 1.08006 * 120.10742 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 1.9587 -0.6924 -1.1995 6 6 1.5232 0.0787 -2.4470 7 1 1.8273 1.1214 -2.3543 8 6 2.1726 -0.5275 -3.6644 9 1 2.8244 0.0712 -4.2834 10 6 1.9344 -1.8464 -3.9880 11 7 1.1402 -2.5753 -3.2346 12 14 2.7387 -2.5977 -5.4974 13 1 4.2155 -2.5230 -5.3602 14 1 2.3250 -4.0183 -5.6233 15 1 2.3156 -1.8492 -6.7081 16 8 0.1023 0.0070 -2.5796 17 6 -0.5015 0.9937 -3.2930 18 6 0.2674 1.9500 -3.9431 19 6 -0.3408 2.9527 -4.6751 20 6 -1.7170 3.0167 -4.7555 21 7 -2.3638 4.0960 -5.5350 22 8 -1.6814 4.9277 -6.1062 23 8 -3.5785 4.1524 -5.6053 24 6 -2.4987 2.0631 -4.1006 25 6 -3.9270 2.1259 -4.1822 26 7 -5.0601 2.1757 -4.2467 27 6 -1.8828 1.0480 -3.3667 28 1 -0.3633 0.6666 -0.7821 29 1 -0.3633 -1.0106 -0.1864 30 1 -0.3634 0.3439 0.9683 31 1 1.5952 1.8989 0.8900 32 1 3.0486 1.3851 0.0005 33 1 1.5953 1.8989 -0.8899 34 1 1.5954 -1.7201 1.1994 35 1 3.0487 -0.6921 1.1996 36 1 1.5953 -0.1786 2.0894 37 1 3.0469 -0.7481 -1.1681 38 1 1.5442 -1.7000 -1.2320 39 1 0.9724 -3.5030 -3.4625 40 1 1.3447 1.9078 -3.8799 41 1 0.2629 3.6909 -5.1821 42 1 -2.4821 0.3071 -2.8584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229525967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:59 Heat of formation + Delta-G solvation = 127.120748 kcal Electronic energy + Delta-G solvation = -27880.536382 eV Core-core repulsion = 23948.788375 eV Total energy + Delta-G solvation = -3931.748007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.31888 -42.80328 -41.12724 -39.00804 -37.87063 -37.31729 -35.26026 -32.94148 -32.48882 -31.35514 -29.48736 -29.42092 -27.93984 -27.49308 -25.50714 -24.68085 -23.54643 -22.59222 -21.17183 -20.05221 -19.78133 -18.76106 -18.63199 -18.41026 -17.85075 -17.54697 -17.34895 -16.86254 -16.60340 -15.96500 -15.64930 -15.28690 -15.12765 -14.54628 -14.49560 -14.32124 -14.06521 -14.02546 -13.75798 -13.40446 -13.28993 -13.18858 -13.14005 -13.11151 -12.93454 -12.87708 -12.83089 -12.71615 -12.55110 -12.39273 -12.35418 -12.26782 -11.46135 -11.35996 -10.85498 -10.50540 -9.63292 -8.44749 -6.60066 -1.43474 -0.44955 0.24562 0.33963 1.04323 1.34088 1.38404 1.46436 1.57268 1.65019 1.95551 2.28056 2.40437 2.58123 2.85156 3.09323 3.16300 3.23871 3.25871 3.57548 3.69939 3.89880 3.95010 4.13537 4.20571 4.30330 4.33836 4.38428 4.46839 4.52282 4.55308 4.63110 4.67095 4.78431 4.84677 4.86797 4.89268 4.96400 5.07898 5.22255 5.25469 5.57129 5.70638 6.17285 6.23148 6.38332 6.63525 7.24940 8.53665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.261 5.261 3 C -0.058 4.058 4 C -0.042 4.042 5 C 0.015 3.985 6 C 0.178 3.822 7 H 0.096 0.904 8 C -0.564 4.564 9 H 0.077 0.923 10 C 0.080 3.920 11 N -0.861 5.861 12 Si 0.907 3.093 13 H -0.271 1.271 14 H -0.304 1.304 15 H -0.289 1.289 16 O -0.283 6.283 17 C 0.218 3.782 18 C -0.168 4.168 19 C 0.003 3.997 20 C -0.080 4.080 21 N 0.036 4.964 22 O -0.147 6.147 23 O -0.234 6.234 24 C 0.073 3.927 25 C 0.252 3.748 26 N -0.410 5.410 27 C -0.103 4.103 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.269 0.731 40 H 0.186 0.814 41 H 0.179 0.821 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.928 2.276 22.006 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 N 0.081 4.919 3 C -0.199 4.199 4 C -0.183 4.183 5 C -0.106 4.106 6 C 0.124 3.876 7 H 0.114 0.886 8 C -0.601 4.601 9 H 0.095 0.905 10 C -0.129 4.129 11 N -0.496 5.496 12 Si 0.737 3.263 13 H -0.196 1.196 14 H -0.230 1.230 15 H -0.216 1.216 16 O -0.194 6.194 17 C 0.167 3.833 18 C -0.188 4.188 19 C -0.016 4.016 20 C -0.167 4.167 21 N 0.546 4.454 22 O -0.370 6.370 23 O -0.431 6.431 24 C 0.069 3.931 25 C -0.064 4.064 26 N -0.086 5.086 27 C -0.125 4.125 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.203 0.797 41 H 0.196 0.804 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.221 1.441 22.445 24.308 hybrid contribution 0.368 -0.593 -2.187 2.296 sum 9.589 0.848 20.257 22.429 Atomic orbital electron populations 1.24291 0.76777 1.08971 1.08621 1.46049 1.15165 1.15564 1.15098 1.24353 1.06332 0.79907 1.09271 1.24186 1.05779 1.01733 0.86611 1.24179 1.04263 1.01333 0.80815 1.20812 0.75470 0.97874 0.93402 0.88630 1.21505 1.30787 0.96027 1.11829 0.90519 1.25045 0.93571 0.97941 0.96309 1.69649 1.33313 1.09044 1.37626 0.86419 0.79969 0.77351 0.82596 1.19575 1.23030 1.21571 1.86458 1.26500 1.42855 1.63583 1.19040 0.90947 0.85658 0.87660 1.21832 1.03274 0.94148 0.99548 1.21062 0.89346 0.97771 0.93441 1.21051 0.94335 0.93869 1.07451 1.43908 1.00822 1.01476 0.99172 1.94496 1.63296 1.34608 1.44580 1.94617 0.97066 1.81893 1.69512 1.15293 0.83768 0.95602 0.98477 1.25403 0.92649 0.93892 0.94456 1.81228 1.13163 1.07366 1.06820 1.20554 0.93161 0.97807 1.01014 0.87167 0.87612 0.84581 0.84236 0.84968 0.87320 0.87321 0.85633 0.84461 0.83950 0.84948 0.92070 0.79686 0.80379 0.80573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.21 7.10 127.69 0.91 2.12 16 2 N -0.26 7.62 0.05 ******* -0.07 7.56 16 3 C -0.06 1.91 7.56 127.69 0.97 2.88 16 4 C -0.04 1.40 7.99 127.69 1.02 2.42 16 5 C 0.01 -0.26 3.49 86.30 0.30 0.04 16 6 C 0.18 -1.81 1.39 29.85 0.04 -1.76 16 7 H 0.10 -1.71 4.06 -2.38 -0.01 -1.72 16 8 C -0.56 -1.78 7.88 25.60 0.20 -1.58 16 9 H 0.08 0.36 7.81 -2.91 -0.02 0.33 16 10 C 0.08 0.85 5.24 84.65 0.44 1.29 16 11 N -0.86 -9.41 10.96 21.45 0.24 -9.17 16 12 Si 0.91 13.43 29.54 68.60 2.03 15.46 16 13 H -0.27 -4.04 7.11 99.48 0.71 -3.33 16 14 H -0.30 -5.75 7.11 99.48 0.71 -5.05 16 15 H -0.29 -5.28 7.11 99.48 0.71 -4.57 16 16 O -0.28 2.17 6.21 -92.52 -0.57 1.60 16 17 C 0.22 -1.46 6.08 22.47 0.14 -1.32 16 18 C -0.17 1.31 8.68 22.42 0.19 1.51 16 19 C 0.00 -0.01 9.54 22.22 0.21 0.20 16 20 C -0.08 -0.28 6.88 36.65 0.25 -0.03 16 21 N 0.04 0.43 4.45 -45.81 -0.20 0.22 16 22 O -0.15 -1.74 18.44 18.88 0.35 -1.39 16 23 O -0.23 -4.16 16.35 18.88 0.31 -3.85 16 24 C 0.07 0.17 5.73 -21.38 -0.12 0.04 16 25 C 0.25 2.38 12.72 88.33 1.12 3.50 16 26 N -0.41 -6.18 18.38 19.00 0.35 -5.83 16 27 C -0.10 0.47 9.69 22.64 0.22 0.69 16 28 H 0.11 -2.64 5.31 -2.39 -0.01 -2.65 16 29 H 0.11 -2.35 7.93 -2.39 -0.02 -2.36 16 30 H 0.14 -4.47 7.98 -2.39 -0.02 -4.49 16 31 H 0.14 -5.21 8.14 -2.38 -0.02 -5.23 16 32 H 0.13 -4.62 8.14 -2.38 -0.02 -4.64 16 33 H 0.11 -3.36 5.85 -2.39 -0.01 -3.37 16 34 H 0.11 -3.29 8.14 -2.39 -0.02 -3.30 16 35 H 0.13 -4.32 8.13 -2.39 -0.02 -4.34 16 36 H 0.14 -5.13 8.06 -2.38 -0.02 -5.15 16 37 H 0.14 -2.81 8.10 -2.39 -0.02 -2.83 16 38 H 0.13 -1.35 6.15 -2.39 -0.01 -1.37 16 39 H 0.27 3.89 8.31 -92.71 -0.77 3.12 16 40 H 0.19 -2.17 5.64 -2.91 -0.02 -2.18 16 41 H 0.18 -1.26 7.60 -2.91 -0.02 -1.28 16 42 H 0.18 -1.39 8.06 -2.91 -0.02 -1.42 16 Total: 0.00 -50.62 349.11 9.38 -41.24 By element: Atomic # 1 Polarization: -56.90 SS G_CDS: 1.06 Total: -55.84 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.90 Total: 10.01 kcal Atomic # 7 Polarization: -7.54 SS G_CDS: 0.31 Total: -7.23 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.65 kcal Atomic # 14 Polarization: 13.43 SS G_CDS: 2.03 Total: 15.46 kcal Total: -50.62 9.38 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229525967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.366 kcal (2) G-P(sol) polarization free energy of solvation -50.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds