Wall clock time and date at job start Tue Mar 31 2020 12:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 109.47245 * 2 1 4 4 C 1.46903 * 109.46879 * 240.00041 * 2 1 3 5 5 C 1.46899 * 109.47100 * 120.00098 * 2 1 3 6 6 C 1.53000 * 109.47260 * 63.72114 * 5 2 1 7 7 H 1.09003 * 109.46921 * 54.98421 * 6 5 2 8 8 C 1.50700 * 109.47243 * 174.97982 * 6 5 2 9 9 H 1.08002 * 120.00358 * 240.00940 * 8 6 5 10 10 C 1.37878 * 119.99953 * 59.99928 * 8 6 5 11 11 N 1.31517 * 119.99540 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 120.00148 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47297 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47402 * 120.00382 * 12 10 8 15 15 H 1.48504 * 109.47276 * 240.00800 * 12 10 8 16 16 O 1.42894 * 109.47665 * 294.98354 * 6 5 2 17 17 C 1.35906 * 117.00560 * 151.98311 * 16 6 5 18 18 C 1.38867 * 119.97793 * 5.17849 * 17 16 6 19 19 C 1.38247 * 120.25080 * 179.71801 * 18 17 16 20 20 C 1.37997 * 120.20949 * 0.27868 * 19 18 17 21 21 C 1.39617 * 119.96314 * 359.97438 * 20 19 18 22 22 C 1.43203 * 120.12860 * 180.02562 * 21 20 19 23 23 N 8.00532 * 35.74282 * 181.78850 * 2 1 3 24 24 C 1.38436 * 119.98432 * 185.45011 * 17 16 6 25 25 N 1.48016 * 120.10709 * 0.02562 * 24 17 16 26 26 O 1.21797 * 120.00367 * 270.27587 * 25 24 17 27 27 O 1.21804 * 119.99844 * 90.27946 * 25 24 17 28 28 H 1.08998 * 109.46878 * 290.97691 * 1 2 3 29 29 H 1.09005 * 109.46773 * 50.97701 * 1 2 3 30 30 H 1.08994 * 109.47303 * 170.97702 * 1 2 3 31 31 H 1.09001 * 109.47431 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47045 * 300.00048 * 3 2 1 33 33 H 1.09002 * 109.47346 * 59.99987 * 3 2 1 34 34 H 1.09002 * 109.47006 * 299.99940 * 4 2 1 35 35 H 1.09000 * 109.47276 * 60.00035 * 4 2 1 36 36 H 1.09001 * 109.46452 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.46849 * 303.72412 * 5 2 1 38 38 H 1.08999 * 109.47200 * 183.72668 * 5 2 1 39 39 H 0.97009 * 119.99388 * 179.97438 * 11 10 8 40 40 H 1.08002 * 119.86996 * 359.97438 * 18 17 16 41 41 H 1.07997 * 119.89388 * 180.29419 * 19 18 17 42 42 H 1.07999 * 120.01388 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5266 -2.1595 1.1535 7 1 1.8682 -2.6098 0.2215 8 6 2.1316 -2.8981 2.3195 9 1 2.7920 -3.7347 2.1449 10 6 1.8421 -2.5059 3.6092 11 7 1.0376 -1.4874 3.8217 12 14 2.5925 -3.4209 5.0544 13 1 3.4560 -4.5190 4.5507 14 1 3.4089 -2.4819 5.8649 15 1 1.5095 -3.9891 5.8968 16 8 0.1018 -2.2390 1.2268 17 6 -0.4875 -3.3127 0.6377 18 6 0.2955 -4.3237 0.0964 19 6 -0.2981 -5.4212 -0.4990 20 6 -1.6732 -5.5166 -0.5645 21 6 -2.4689 -4.5027 -0.0278 22 6 -3.8962 -4.5984 -0.0933 23 7 -5.0284 -4.6740 -0.1459 24 6 -1.8679 -3.3951 0.5726 25 7 -2.7039 -2.3151 1.1433 26 8 -3.0576 -2.3693 2.3075 27 8 -3.0383 -1.3722 0.4485 28 1 -0.3633 0.3679 0.9595 29 1 -0.3633 0.6471 -0.7984 30 1 -0.3633 -1.0149 -0.1612 31 1 3.0488 1.3850 0.0005 32 1 1.5954 1.8988 -0.8900 33 1 1.5954 1.8988 0.8900 34 1 1.5953 -1.7202 -1.1994 35 1 1.5953 -0.1787 -2.0895 36 1 3.0487 -0.6929 -1.1992 37 1 1.5419 -0.2187 2.0881 38 1 3.0467 -0.6350 1.2335 39 1 0.8337 -1.2116 4.7292 40 1 1.3722 -4.2543 0.1444 41 1 0.3164 -6.2064 -0.9139 42 1 -2.1335 -6.3752 -1.0307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229600250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:11 Heat of formation + Delta-G solvation = 131.176049 kcal Electronic energy + Delta-G solvation = -28907.131254 eV Core-core repulsion = 24975.559099 eV Total energy + Delta-G solvation = -3931.572155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.39702 -42.82436 -41.06520 -39.14631 -37.67635 -37.62957 -35.31549 -33.32796 -32.24595 -31.16539 -29.54147 -29.53517 -28.00326 -27.69810 -25.71212 -24.58316 -23.54528 -22.69222 -21.18870 -19.91333 -19.82304 -19.06111 -18.78228 -18.37261 -17.89830 -17.56932 -17.33527 -16.72992 -16.58721 -16.14746 -16.10868 -15.38418 -15.20605 -14.73025 -14.58429 -14.23437 -14.15310 -13.83992 -13.48859 -13.38475 -13.31385 -13.27582 -13.22917 -13.14060 -13.06440 -13.03105 -12.92133 -12.80978 -12.68046 -12.36415 -12.30895 -12.22370 -11.47342 -11.33849 -10.92263 -10.61093 -9.54845 -8.46902 -6.65218 -0.88919 -0.69360 -0.09582 0.29393 0.95986 1.06082 1.31662 1.46132 1.51126 1.52663 1.87367 2.24651 2.36084 2.44648 2.79097 3.02426 3.06073 3.18752 3.48401 3.65375 3.71945 3.85847 3.99647 4.02769 4.10610 4.18290 4.27076 4.29461 4.36355 4.48603 4.55817 4.62470 4.72140 4.77258 4.80549 4.82368 4.95666 5.07147 5.08036 5.14805 5.33930 5.52560 5.65364 5.91624 6.15130 6.32213 6.59335 7.20589 8.51485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.260 5.260 3 C -0.043 4.043 4 C -0.057 4.057 5 C 0.010 3.990 6 C 0.180 3.820 7 H 0.101 0.899 8 C -0.560 4.560 9 H 0.084 0.916 10 C 0.070 3.930 11 N -0.866 5.866 12 Si 0.916 3.084 13 H -0.261 1.261 14 H -0.287 1.287 15 H -0.309 1.309 16 O -0.308 6.308 17 C 0.193 3.807 18 C -0.155 4.155 19 C -0.023 4.023 20 C -0.083 4.083 21 C 0.032 3.968 22 C 0.245 3.755 23 N -0.420 5.420 24 C -0.069 4.069 25 N 0.031 4.969 26 O -0.211 6.211 27 O -0.109 6.109 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.152 0.848 39 H 0.267 0.733 40 H 0.185 0.815 41 H 0.199 0.801 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.426 6.161 -18.923 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 N 0.082 4.918 3 C -0.183 4.183 4 C -0.197 4.197 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.119 0.881 8 C -0.597 4.597 9 H 0.102 0.898 10 C -0.138 4.138 11 N -0.501 5.501 12 Si 0.746 3.254 13 H -0.185 1.185 14 H -0.213 1.213 15 H -0.237 1.237 16 O -0.220 6.220 17 C 0.143 3.857 18 C -0.175 4.175 19 C -0.041 4.041 20 C -0.104 4.104 21 C 0.027 3.973 22 C -0.071 4.071 23 N -0.095 5.095 24 C -0.153 4.153 25 N 0.559 4.441 26 O -0.418 6.418 27 O -0.347 6.347 28 H 0.107 0.893 29 H 0.159 0.841 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.169 0.831 39 H 0.076 0.924 40 H 0.202 0.798 41 H 0.216 0.784 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.972 5.736 -18.915 22.606 hybrid contribution -0.167 -0.194 2.366 2.380 sum 10.805 5.542 -16.549 20.526 Atomic orbital electron populations 1.24183 0.77562 1.08316 1.07980 1.46051 1.14323 1.16018 1.15370 1.24216 1.06045 0.78939 1.09127 1.24380 1.06603 1.01769 0.86976 1.24255 1.04442 0.94392 0.87953 1.20878 0.74709 0.92903 0.98823 0.88138 1.21567 1.30564 1.17565 0.90001 0.89788 1.25235 0.93487 0.94455 1.00661 1.69717 1.32523 1.25453 1.22433 0.86150 0.78189 0.79802 0.81268 1.18460 1.21300 1.23673 1.86538 1.27665 1.38016 1.69827 1.18442 0.87245 0.90392 0.89617 1.22034 1.02670 0.93058 0.99732 1.21808 0.93409 0.96875 0.91996 1.21588 0.93998 0.96674 0.98117 1.15434 0.84032 0.94995 1.02823 1.25886 0.92990 0.94292 0.93904 1.81329 1.12813 1.07116 1.08265 1.20261 0.89139 0.92359 1.13504 1.43679 0.98814 1.01515 1.00109 1.94671 1.59736 1.85183 1.02164 1.94421 1.56305 1.25116 1.58811 0.89260 0.84137 0.88309 0.84794 0.84206 0.87930 0.87641 0.84044 0.84090 0.85824 0.83067 0.92356 0.79785 0.78367 0.80183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.65 7.13 127.69 0.91 1.56 16 2 N -0.26 6.05 0.05 ******* -0.07 5.98 16 3 C -0.04 1.22 8.00 127.69 1.02 2.24 16 4 C -0.06 1.68 7.56 127.69 0.96 2.65 16 5 C 0.01 -0.12 3.55 86.30 0.31 0.18 16 6 C 0.18 -0.87 1.35 29.85 0.04 -0.83 16 7 H 0.10 -1.44 3.89 -2.39 -0.01 -1.45 16 8 C -0.56 -4.03 8.32 25.60 0.21 -3.82 16 9 H 0.08 0.59 7.81 -2.91 -0.02 0.57 16 10 C 0.07 1.08 5.24 84.65 0.44 1.53 16 11 N -0.87 -15.51 10.93 21.45 0.23 -15.28 16 12 Si 0.92 16.06 29.54 68.60 2.03 18.08 16 13 H -0.26 -4.23 7.11 99.48 0.71 -3.53 16 14 H -0.29 -5.50 7.11 99.48 0.71 -4.80 16 15 H -0.31 -7.21 7.11 99.48 0.71 -6.50 16 16 O -0.31 -0.37 5.91 -92.50 -0.55 -0.92 16 17 C 0.19 -0.04 5.89 22.47 0.13 0.09 16 18 C -0.16 1.32 8.79 22.42 0.20 1.51 16 19 C -0.02 0.29 10.03 22.21 0.22 0.52 16 20 C -0.08 0.65 9.75 22.55 0.22 0.87 16 21 C 0.03 0.06 5.73 -21.37 -0.12 -0.06 16 22 C 0.24 2.17 14.81 88.33 1.31 3.48 16 23 N -0.42 -6.08 18.54 19.00 0.35 -5.73 16 24 C -0.07 -0.36 6.17 36.75 0.23 -0.13 16 25 N 0.03 0.39 3.48 -45.58 -0.16 0.24 16 26 O -0.21 -4.44 19.25 18.89 0.36 -4.08 16 27 O -0.11 -1.15 19.26 18.88 0.36 -0.79 16 28 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 29 H 0.14 -3.33 8.01 -2.38 -0.02 -3.35 16 30 H 0.10 -1.16 4.92 -2.39 -0.01 -1.17 16 31 H 0.13 -4.23 8.12 -2.39 -0.02 -4.25 16 32 H 0.14 -4.64 8.08 -2.39 -0.02 -4.66 16 33 H 0.10 -2.50 8.14 -2.39 -0.02 -2.52 16 34 H 0.11 -2.88 5.91 -2.39 -0.01 -2.90 16 35 H 0.14 -4.84 8.14 -2.39 -0.02 -4.86 16 36 H 0.14 -4.70 8.14 -2.39 -0.02 -4.72 16 37 H 0.12 -0.33 6.08 -2.39 -0.01 -0.34 16 38 H 0.15 -2.48 8.11 -2.39 -0.02 -2.50 16 39 H 0.27 5.66 8.31 -92.70 -0.77 4.89 16 40 H 0.19 -2.34 5.73 -2.91 -0.02 -2.36 16 41 H 0.20 -4.13 8.06 -2.91 -0.02 -4.16 16 42 H 0.18 -2.35 8.06 -2.91 -0.02 -2.38 16 Total: 0.00 -54.23 354.04 9.71 -44.52 By element: Atomic # 1 Polarization: -52.88 SS G_CDS: 1.06 Total: -51.82 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.08 Total: 9.79 kcal Atomic # 7 Polarization: -15.15 SS G_CDS: 0.36 Total: -14.79 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: 0.18 Total: -5.78 kcal Atomic # 14 Polarization: 16.06 SS G_CDS: 2.03 Total: 18.08 kcal Total: -54.23 9.71 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229600250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.697 kcal (2) G-P(sol) polarization free energy of solvation -54.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds