Wall clock time and date at job start Tue Mar 31 2020 13:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46504 * 110.80424 * 2 1 4 4 C 1.34769 * 120.00076 * 303.63075 * 3 2 1 5 5 O 1.21593 * 120.00027 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00293 * 180.02562 * 4 3 2 7 7 C 1.46491 * 120.00310 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47656 * 179.97438 * 7 6 4 9 9 C 1.38300 * 119.93104 * 269.73426 * 8 7 6 10 10 C 1.38102 * 120.07095 * 179.72307 * 9 8 7 11 11 C 1.38883 * 119.92791 * 0.53790 * 10 9 8 12 12 O 1.35747 * 120.07235 * 179.75339 * 11 10 9 13 13 C 1.34823 * 117.00323 * 174.44090 * 12 11 10 14 14 H 1.07998 * 119.99721 * 5.05766 * 13 12 11 15 15 C 1.38659 * 120.00117 * 185.04936 * 13 12 11 16 16 N 1.31556 * 119.99581 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46941 * 60.00351 * 17 15 13 19 19 H 1.48494 * 109.47100 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47183 * 300.00538 * 17 15 13 21 21 C 1.38880 * 119.85830 * 359.73088 * 11 10 9 22 22 C 1.38102 * 119.93445 * 359.97438 * 21 11 10 23 23 C 1.54810 * 110.90879 * 123.62752 * 2 1 3 24 24 C 1.54111 * 104.18795 * 139.08038 * 23 2 1 25 25 O 1.43742 * 107.41823 * 1.95463 * 24 23 2 26 26 C 1.44576 * 106.87341 * 333.67411 * 25 24 23 27 27 H 1.08999 * 109.47217 * 296.36929 * 1 2 3 28 28 H 1.08998 * 109.47407 * 56.37199 * 1 2 3 29 29 H 1.09003 * 109.47146 * 176.37073 * 1 2 3 30 30 H 0.97003 * 119.99613 * 123.62570 * 3 2 1 31 31 H 0.97003 * 119.99396 * 359.97438 * 6 4 3 32 32 H 1.08998 * 109.47074 * 299.99711 * 7 6 4 33 33 H 1.09004 * 109.47410 * 59.99779 * 7 6 4 34 34 H 1.08003 * 119.96181 * 359.97438 * 9 8 7 35 35 H 1.07994 * 120.03571 * 180.26777 * 10 9 8 36 36 H 0.97001 * 119.99606 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.02976 * 179.97438 * 21 11 10 38 38 H 1.08000 * 119.96350 * 180.02562 * 22 21 11 39 39 H 1.09003 * 110.48818 * 20.40882 * 23 2 1 40 40 H 1.08998 * 110.49321 * 257.75606 * 23 2 1 41 41 H 1.08999 * 109.87800 * 121.45509 * 24 23 2 42 42 H 1.08997 * 109.87670 * 242.46072 * 24 23 2 43 43 H 1.08999 * 110.50135 * 281.37999 * 26 25 24 44 44 H 1.08995 * 110.77804 * 158.51075 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0503 1.3695 0.0000 4 6 1.6853 2.2290 -0.9718 5 8 0.9246 1.8677 -1.8488 6 7 2.1644 3.4888 -0.9721 7 6 1.7682 4.4229 -2.0287 8 6 2.4369 5.7538 -1.7995 9 6 1.8075 6.7198 -1.0357 10 6 2.4201 7.9384 -0.8190 11 6 3.6647 8.1974 -1.3783 12 8 4.2673 9.3960 -1.1713 13 6 5.5214 9.5405 -1.6446 14 1 5.9709 8.7535 -2.2319 15 6 6.2341 10.6996 -1.3776 16 7 5.6865 11.6581 -0.6619 17 14 7.9719 10.8994 -2.0328 18 1 7.9536 10.8233 -3.5157 19 1 8.5115 12.2170 -1.6110 20 1 8.8324 9.8166 -1.4921 21 6 4.2916 7.2273 -2.1494 22 6 3.6764 6.0084 -2.3573 23 6 2.0824 -0.8009 1.2042 24 6 3.2719 -1.5880 0.6205 25 8 3.3955 -1.2179 -0.7629 26 6 2.0831 -0.8026 -1.2051 27 1 -0.3633 0.4564 0.9207 28 1 -0.3634 0.5691 -0.8557 29 1 -0.3633 -1.0256 -0.0651 30 1 2.6574 1.6576 0.6995 31 1 2.7716 3.7769 -0.2726 32 1 2.0715 4.0256 -2.9974 33 1 0.6861 4.5527 -2.0120 34 1 0.8375 6.5195 -0.6049 35 1 1.9300 8.6907 -0.2189 36 1 6.1852 12.4688 -0.4748 37 1 5.2593 7.4259 -2.5860 38 1 4.1637 5.2535 -2.9565 39 1 1.3246 -1.4839 1.5881 40 1 2.4209 -0.1247 1.9892 41 1 4.1855 -1.3303 1.1562 42 1 3.0837 -2.6585 0.7023 43 1 1.4562 -1.6708 -1.4082 44 1 2.1556 -0.1679 -2.0882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270356742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:00 Heat of formation + Delta-G solvation = -98.672523 kcal Electronic energy + Delta-G solvation = -26085.342575 eV Core-core repulsion = 22195.573609 eV Total energy + Delta-G solvation = -3889.768966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62769 -40.83771 -39.88365 -38.49297 -36.02291 -35.48174 -34.28815 -32.73037 -31.82915 -31.07339 -30.41841 -27.65480 -27.26873 -26.16985 -23.83115 -23.64392 -22.44920 -21.99779 -20.94630 -19.88142 -19.39216 -18.83092 -17.95340 -16.95748 -16.65568 -16.63213 -16.41572 -16.18085 -15.99856 -15.91971 -15.53138 -15.27856 -14.94984 -14.81360 -14.38465 -14.29617 -14.15141 -13.79153 -13.65854 -13.41420 -13.09608 -13.01213 -12.76354 -12.54264 -12.51698 -12.38154 -12.29724 -12.21423 -12.14378 -11.76674 -11.20586 -11.03167 -10.79111 -10.74065 -10.23200 -9.81862 -9.70269 -9.01718 -8.48443 -6.16673 0.53115 0.57861 1.35666 1.45023 1.51393 1.81627 2.17158 2.19841 2.79976 2.99546 3.12476 3.34496 3.47753 3.48807 3.80102 3.89369 3.99420 4.04005 4.17254 4.17688 4.32628 4.47652 4.50904 4.57064 4.73727 4.76306 4.78006 4.81274 4.82182 4.87792 4.97874 5.04608 5.05977 5.14295 5.26770 5.32029 5.51852 5.57157 5.62653 5.69140 5.76134 5.87759 6.01209 6.05951 6.16614 6.96294 7.12569 7.63710 7.75497 8.74105 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.002209 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.455294 B =12669.631869 C =13312.844995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 N -0.724 5.724 4 C 0.702 3.298 5 O -0.624 6.624 6 N -0.733 5.733 7 C 0.206 3.794 8 C -0.181 4.181 9 C -0.042 4.042 10 C -0.204 4.204 11 C 0.122 3.878 12 O -0.228 6.228 13 C -0.415 4.415 14 H 0.103 0.897 15 C -0.021 4.021 16 N -0.918 5.918 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.257 1.257 21 C -0.244 4.244 22 C -0.046 4.046 23 C -0.146 4.146 24 C 0.037 3.963 25 O -0.403 6.403 26 C 0.040 3.960 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.408 0.592 31 H 0.406 0.594 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -25.822 4.754 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 N -0.380 5.380 4 C 0.402 3.598 5 O -0.505 6.505 6 N -0.388 5.388 7 C 0.082 3.918 8 C -0.182 4.182 9 C -0.060 4.060 10 C -0.224 4.224 11 C 0.071 3.929 12 O -0.134 6.134 13 C -0.491 4.491 14 H 0.120 0.880 15 C -0.219 4.219 16 N -0.556 5.556 17 Si 0.836 3.164 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.181 1.181 21 C -0.263 4.263 22 C -0.064 4.064 23 C -0.184 4.184 24 C -0.039 4.039 25 O -0.322 6.322 26 C -0.037 4.037 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.245 0.755 31 H 0.241 0.759 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.166 0.834 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.394 -25.747 4.024 27.089 hybrid contribution 1.213 1.075 0.348 1.658 sum -6.181 -24.673 4.372 25.808 Atomic orbital electron populations 1.22069 0.92546 1.03525 1.03160 1.21678 0.94862 0.80640 0.95673 1.45057 1.52213 1.11276 1.29468 1.16099 0.80520 0.80935 0.82227 1.90848 1.41453 1.78046 1.40183 1.45285 1.51916 1.10231 1.31398 1.19683 0.98263 0.83960 0.89876 1.19500 0.96745 0.96527 1.05446 1.20876 0.99086 0.90745 0.95317 1.20455 0.95076 0.99910 1.06921 1.19997 0.93452 0.85800 0.93620 1.83944 1.29465 1.29063 1.70976 1.21786 0.88476 1.05073 1.33718 0.87982 1.26573 1.04580 0.94083 0.96664 1.70172 1.39832 1.07480 1.38137 0.84667 0.74334 0.78441 0.78930 1.18240 1.19691 1.18121 1.21238 1.02910 0.95845 1.06333 1.20930 0.93965 0.94896 0.96628 1.23284 0.98744 0.99578 0.96806 1.23394 0.99487 0.99516 0.81521 1.88935 1.29945 1.86578 1.26763 1.24002 0.84163 0.97814 0.97735 0.91474 0.92217 0.89802 0.75538 0.75918 0.91694 0.91064 0.83440 0.86625 0.91782 0.86258 0.84579 0.86813 0.88144 0.88966 0.90796 0.90082 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.46 71.98 0.61 -1.72 16 2 C 0.16 2.40 0.93 4.90 0.00 2.40 16 3 N -0.72 -12.32 5.19 -432.09 -2.24 -14.56 16 4 C 0.70 16.57 7.93 179.06 1.42 17.99 16 5 O -0.62 -18.87 13.15 -4.01 -0.05 -18.92 16 6 N -0.73 -15.95 5.55 -482.31 -2.68 -18.63 16 7 C 0.21 5.04 5.80 85.63 0.50 5.54 16 8 C -0.18 -5.21 5.25 -19.84 -0.10 -5.31 16 9 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 10 C -0.20 -8.16 9.99 22.39 0.22 -7.94 16 11 C 0.12 5.82 6.65 22.58 0.15 5.97 16 12 O -0.23 -13.36 9.76 -22.64 -0.22 -13.59 16 13 C -0.41 -23.56 9.49 67.92 0.64 -22.92 16 14 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 15 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 16 N -0.92 -55.43 13.67 21.61 0.30 -55.14 16 17 Si 1.02 41.99 29.55 68.60 2.03 44.02 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 C -0.24 -10.09 9.17 22.39 0.21 -9.89 16 22 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 23 C -0.15 -1.22 6.28 31.59 0.20 -1.02 16 24 C 0.04 0.42 7.69 72.36 0.56 0.98 16 25 O -0.40 -8.21 11.54 -148.98 -1.72 -9.92 16 26 C 0.04 0.78 6.62 72.67 0.48 1.26 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.32 5.93 -2.39 -0.01 1.30 16 29 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.41 5.00 8.32 -92.71 -0.77 4.23 16 31 H 0.41 7.60 8.48 -92.71 -0.79 6.81 16 32 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 33 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 37 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 38 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.11 0.51 7.86 -2.39 -0.02 0.49 16 40 H 0.10 0.56 7.77 -2.39 -0.02 0.54 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 1.28 8.01 -2.39 -0.02 1.26 16 44 H 0.07 1.88 6.84 -2.39 -0.02 1.86 16 Total: -1.00 -74.30 364.08 0.68 -73.61 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.51 Total: 30.82 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 5.78 Total: -17.69 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -4.62 Total: -88.33 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.99 Total: -42.43 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -74.30 0.68 -73.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270356742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.060 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds