Wall clock time and date at job start Tue Mar 31 2020 13:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.54211 * 2 1 4 4 C 1.34772 * 120.00378 * 59.82225 * 3 2 1 5 5 O 1.21595 * 119.99473 * 359.97438 * 4 3 2 6 6 N 1.34768 * 120.00596 * 180.02562 * 4 3 2 7 7 C 1.39942 * 120.00537 * 174.58733 * 6 4 3 8 8 C 1.38958 * 120.03661 * 146.68527 * 7 6 4 9 9 C 1.38158 * 120.06605 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.13833 * 359.69782 * 9 8 7 11 11 C 1.38908 * 120.06872 * 0.55745 * 10 9 8 12 12 O 1.35748 * 120.03557 * 179.74660 * 11 10 9 13 13 C 1.34838 * 116.99759 * 353.91429 * 12 11 10 14 14 H 1.07996 * 120.00121 * 354.61139 * 13 12 11 15 15 C 1.38648 * 119.99640 * 174.61191 * 13 12 11 16 16 N 1.31564 * 120.00198 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99846 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47130 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47008 * 119.99679 * 17 15 13 20 20 H 1.48503 * 109.47166 * 239.99934 * 17 15 13 21 21 C 1.38704 * 120.03110 * 326.66147 * 7 6 4 22 22 C 1.53172 * 109.61527 * 120.21993 * 2 1 3 23 23 C 1.53095 * 109.16230 * 176.89263 * 22 2 1 24 24 O 1.42911 * 109.41317 * 302.39139 * 23 22 2 25 25 C 1.42904 * 114.09772 * 61.15835 * 24 23 22 26 26 C 1.53086 * 109.41408 * 298.84318 * 25 24 23 27 27 H 1.09001 * 109.46895 * 59.99920 * 1 2 3 28 28 H 1.08992 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47033 * 299.99967 * 1 2 3 30 30 H 0.96999 * 119.99948 * 239.82169 * 3 2 1 31 31 H 0.97010 * 119.99860 * 354.58457 * 6 4 3 32 32 H 1.07999 * 119.96836 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.93489 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.96554 * 180.29853 * 10 9 8 35 35 H 0.96997 * 119.99445 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.07507 * 0.02562 * 21 7 6 37 37 H 1.09000 * 109.52636 * 296.79990 * 22 2 1 38 38 H 1.09005 * 109.52305 * 56.99144 * 22 2 1 39 39 H 1.08999 * 109.47912 * 182.41386 * 23 22 2 40 40 H 1.08999 * 109.49074 * 62.37948 * 23 22 2 41 41 H 1.08997 * 109.48066 * 178.85430 * 25 24 23 42 42 H 1.09007 * 109.48784 * 58.82780 * 25 24 23 43 43 H 1.09003 * 109.52068 * 297.69944 * 26 25 24 44 44 H 1.09003 * 109.52626 * 177.51358 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0201 1.3806 0.0000 4 6 1.6926 2.2120 1.0089 5 8 0.9900 1.8162 1.9190 6 7 2.1430 3.4822 1.0087 7 6 1.7124 4.3776 1.9942 8 6 2.5714 5.3658 2.4595 9 6 2.1471 6.2497 3.4328 10 6 0.8659 6.1582 3.9422 11 6 0.0042 5.1692 3.4850 12 8 -1.2526 5.0766 3.9896 13 6 -1.5605 5.8916 5.0188 14 1 -0.7974 6.5146 5.4613 15 6 -2.8569 5.9296 5.5089 16 7 -3.7867 5.1710 4.9695 17 14 -3.2838 7.0591 6.9343 18 1 -2.0701 7.8032 7.3568 19 1 -4.3303 8.0221 6.5065 20 1 -3.7904 6.2505 8.0721 21 6 0.4274 4.2798 2.5073 22 6 2.0442 -0.7262 1.2468 23 6 3.5731 -0.7882 1.1975 24 8 3.9834 -1.4476 -0.0022 25 6 3.5714 -0.7877 -1.2009 26 6 2.0425 -0.7256 -1.2479 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.5803 1.6964 -0.7262 31 1 2.7658 3.7759 0.3254 32 1 3.5720 5.4424 2.0604 33 1 2.8166 7.0167 3.7932 34 1 0.5355 6.8536 4.6995 35 1 -4.6937 5.1980 5.3123 36 1 -0.2421 3.5126 2.1474 37 1 1.7302 -0.1848 2.1392 38 1 1.6393 -1.7379 1.2720 39 1 3.9425 -1.3415 2.0609 40 1 3.9788 0.2233 1.2132 41 1 3.9395 -1.3405 -2.0652 42 1 3.9769 0.2240 -1.2168 43 1 1.6375 -1.7373 -1.2731 44 1 1.7271 -0.1838 -2.1396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272128895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:03 Heat of formation + Delta-G solvation = -69.327881 kcal Electronic energy + Delta-G solvation = -27278.768739 eV Core-core repulsion = 23390.272252 eV Total energy + Delta-G solvation = -3888.496487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98660 -39.48435 -38.49283 -36.73212 -35.53232 -34.09896 -32.23735 -31.86591 -31.38715 -29.35111 -28.53261 -28.10870 -25.26720 -23.95129 -23.37797 -22.57577 -21.54489 -20.76449 -19.54748 -18.43417 -18.12380 -17.12210 -16.47460 -16.25261 -15.77064 -15.42101 -15.08332 -15.01944 -14.78422 -14.72252 -14.19542 -13.91515 -13.81287 -13.46714 -12.99917 -12.92408 -12.79214 -12.46043 -12.38707 -12.10665 -11.96482 -11.71571 -11.58072 -11.50138 -11.15915 -11.02211 -10.85415 -10.66472 -10.62336 -10.41597 -9.93437 -9.73484 -9.63624 -9.21910 -9.06062 -8.78713 -7.61590 -7.14622 -6.39593 -3.98381 2.11578 2.38237 2.66936 3.15210 3.16792 3.22642 3.36195 3.63841 3.98827 4.15310 4.35315 4.56835 4.60042 4.64293 4.79912 4.88876 5.15348 5.16329 5.26540 5.35581 5.39957 5.47359 5.59672 5.63253 5.64935 5.70389 5.79624 5.85589 5.89718 6.08144 6.14996 6.25463 6.34122 6.43050 6.54454 6.55126 6.88415 6.95795 7.05470 7.10790 7.26092 7.37949 7.51822 7.85252 8.05153 8.06710 8.71015 9.05746 9.77654 10.78541 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.002950 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.103804 B = 9490.801689 C =10298.180122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.196 3.804 3 N -0.741 5.741 4 C 0.701 3.299 5 O -0.554 6.554 6 N -0.683 5.683 7 C 0.196 3.804 8 C -0.239 4.239 9 C -0.058 4.058 10 C -0.247 4.247 11 C 0.168 3.832 12 O -0.175 6.175 13 C -0.389 4.389 14 H 0.093 0.907 15 C 0.038 3.962 16 N -0.861 5.861 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.187 4.187 22 C -0.169 4.169 23 C 0.064 3.936 24 O -0.384 6.384 25 C 0.061 3.939 26 C -0.157 4.157 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.391 0.609 31 H 0.400 0.600 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.269 0.731 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.409 -8.487 -13.100 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.110 3.890 3 N -0.398 5.398 4 C 0.402 3.598 5 O -0.429 6.429 6 N -0.330 5.330 7 C 0.102 3.898 8 C -0.260 4.260 9 C -0.077 4.077 10 C -0.267 4.267 11 C 0.114 3.886 12 O -0.078 6.078 13 C -0.466 4.466 14 H 0.110 0.890 15 C -0.166 4.166 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.208 4.208 22 C -0.207 4.207 23 C -0.012 4.012 24 O -0.303 6.303 25 C -0.016 4.016 26 C -0.196 4.196 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.225 0.775 31 H 0.234 0.766 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.385 -9.276 -12.304 20.411 hybrid contribution 0.227 1.220 -0.039 1.242 sum 13.612 -8.056 -12.343 20.064 Atomic orbital electron populations 1.22249 0.93547 1.02394 1.04144 1.20124 0.94577 0.79468 0.94877 1.45328 1.57039 1.12027 1.25427 1.15946 0.80700 0.80426 0.82749 1.90966 1.40591 1.75134 1.36192 1.42550 1.49514 1.09319 1.31635 1.16920 0.92083 0.90178 0.90579 1.20219 0.98832 1.01963 1.04979 1.20483 0.95094 0.97108 0.94975 1.21174 0.95267 1.03132 1.07113 1.19130 0.86197 0.91941 0.91359 1.84004 1.23377 1.55669 1.44721 1.21378 0.95701 1.21589 1.07915 0.89009 1.25297 0.94480 0.97773 0.99048 1.70065 1.02391 1.36887 1.40273 0.85652 0.78936 0.79153 0.79696 1.19090 1.20202 1.20166 1.20030 0.95130 1.02906 1.02781 1.22665 0.96206 1.01569 1.00304 1.22562 0.94204 0.97355 0.87109 1.87928 1.77105 1.51421 1.13817 1.22542 0.93379 0.97481 0.88200 1.22510 0.97165 1.02219 0.97658 0.92634 0.91939 0.89407 0.77481 0.76611 0.87536 0.87110 0.85513 0.92127 0.85183 0.87953 0.90400 0.88899 0.93240 0.88772 0.93431 0.89229 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 8.42 37.16 0.31 -1.65 16 2 C 0.20 2.03 0.66 -131.63 -0.09 1.94 16 3 N -0.74 -7.77 4.23 -52.24 -0.22 -8.00 16 4 C 0.70 10.49 7.72 -86.93 -0.67 9.82 16 5 O -0.55 -10.80 10.25 5.28 0.05 -10.75 16 6 N -0.68 -9.70 5.35 -14.24 -0.08 -9.77 16 7 C 0.20 3.65 6.28 -83.72 -0.53 3.12 16 8 C -0.24 -4.08 9.96 -39.34 -0.39 -4.47 16 9 C -0.06 -1.06 10.03 -39.63 -0.40 -1.46 16 10 C -0.25 -5.48 9.13 -39.36 -0.36 -5.84 16 11 C 0.17 4.26 6.64 -39.13 -0.26 4.00 16 12 O -0.17 -5.19 9.76 0.03 0.00 -5.19 16 13 C -0.39 -11.15 9.44 30.88 0.29 -10.86 16 14 H 0.09 2.43 5.30 -52.49 -0.28 2.15 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 17 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 C -0.19 -4.29 8.60 -39.21 -0.34 -4.63 16 22 C -0.17 -1.94 4.77 -26.59 -0.13 -2.07 16 23 C 0.06 0.68 6.68 37.21 0.25 0.93 16 24 O -0.38 -3.99 10.77 -35.23 -0.38 -4.37 16 25 C 0.06 0.45 6.67 37.20 0.25 0.70 16 26 C -0.16 -1.17 4.96 -26.59 -0.13 -1.30 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.38 6.16 -51.93 -0.32 1.06 16 30 H 0.39 2.89 7.54 -40.82 -0.31 2.59 16 31 H 0.40 4.00 8.83 -40.82 -0.36 3.64 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 2.80 5.71 -52.48 -0.30 2.50 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 3.21 6.41 -52.49 -0.34 2.87 16 37 H 0.10 1.50 6.14 -51.93 -0.32 1.18 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.54 7.75 -51.93 -0.40 0.14 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.31 7.09 -51.92 -0.37 -0.06 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 352.69 15.07 5.32 5.32 Total: -1.00 -34.35 352.69 -7.79 -42.13 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.93 Total: 10.65 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.28 Total: -10.79 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.46 Total: -42.88 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.32 Total: -20.30 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.35 -7.79 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272128895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.193 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds