Wall clock time and date at job start Tue Mar 31 2020 13:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.54211 * 2 1 4 4 C 1.34772 * 120.00378 * 59.82225 * 3 2 1 5 5 O 1.21595 * 119.99473 * 359.97438 * 4 3 2 6 6 N 1.34768 * 120.00596 * 180.02562 * 4 3 2 7 7 C 1.39942 * 120.00537 * 174.58733 * 6 4 3 8 8 C 1.38958 * 120.03661 * 146.68527 * 7 6 4 9 9 C 1.38158 * 120.06605 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.13833 * 359.69782 * 9 8 7 11 11 C 1.38908 * 120.06872 * 0.55745 * 10 9 8 12 12 O 1.35748 * 120.03557 * 179.74660 * 11 10 9 13 13 C 1.34838 * 116.99759 * 353.91429 * 12 11 10 14 14 H 1.07996 * 120.00121 * 354.61139 * 13 12 11 15 15 C 1.38648 * 119.99640 * 174.61191 * 13 12 11 16 16 N 1.31564 * 120.00198 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99846 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47130 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47008 * 119.99679 * 17 15 13 20 20 H 1.48503 * 109.47166 * 239.99934 * 17 15 13 21 21 C 1.38704 * 120.03110 * 326.66147 * 7 6 4 22 22 C 1.53172 * 109.61527 * 120.21993 * 2 1 3 23 23 C 1.53095 * 109.16230 * 176.89263 * 22 2 1 24 24 O 1.42911 * 109.41317 * 302.39139 * 23 22 2 25 25 C 1.42904 * 114.09772 * 61.15835 * 24 23 22 26 26 C 1.53086 * 109.41408 * 298.84318 * 25 24 23 27 27 H 1.09001 * 109.46895 * 59.99920 * 1 2 3 28 28 H 1.08992 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47033 * 299.99967 * 1 2 3 30 30 H 0.96999 * 119.99948 * 239.82169 * 3 2 1 31 31 H 0.97010 * 119.99860 * 354.58457 * 6 4 3 32 32 H 1.07999 * 119.96836 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.93489 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.96554 * 180.29853 * 10 9 8 35 35 H 0.96997 * 119.99445 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.07507 * 0.02562 * 21 7 6 37 37 H 1.09000 * 109.52636 * 296.79990 * 22 2 1 38 38 H 1.09005 * 109.52305 * 56.99144 * 22 2 1 39 39 H 1.08999 * 109.47912 * 182.41386 * 23 22 2 40 40 H 1.08999 * 109.49074 * 62.37948 * 23 22 2 41 41 H 1.08997 * 109.48066 * 178.85430 * 25 24 23 42 42 H 1.09007 * 109.48784 * 58.82780 * 25 24 23 43 43 H 1.09003 * 109.52068 * 297.69944 * 26 25 24 44 44 H 1.09003 * 109.52626 * 177.51358 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0201 1.3806 0.0000 4 6 1.6926 2.2120 1.0089 5 8 0.9900 1.8162 1.9190 6 7 2.1430 3.4822 1.0087 7 6 1.7124 4.3776 1.9942 8 6 2.5714 5.3658 2.4595 9 6 2.1471 6.2497 3.4328 10 6 0.8659 6.1582 3.9422 11 6 0.0042 5.1692 3.4850 12 8 -1.2526 5.0766 3.9896 13 6 -1.5605 5.8916 5.0188 14 1 -0.7974 6.5146 5.4613 15 6 -2.8569 5.9296 5.5089 16 7 -3.7867 5.1710 4.9695 17 14 -3.2838 7.0591 6.9343 18 1 -2.0701 7.8032 7.3568 19 1 -4.3303 8.0221 6.5065 20 1 -3.7904 6.2505 8.0721 21 6 0.4274 4.2798 2.5073 22 6 2.0442 -0.7262 1.2468 23 6 3.5731 -0.7882 1.1975 24 8 3.9834 -1.4476 -0.0022 25 6 3.5714 -0.7877 -1.2009 26 6 2.0425 -0.7256 -1.2479 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.5803 1.6964 -0.7262 31 1 2.7658 3.7759 0.3254 32 1 3.5720 5.4424 2.0604 33 1 2.8166 7.0167 3.7932 34 1 0.5355 6.8536 4.6995 35 1 -4.6937 5.1980 5.3123 36 1 -0.2421 3.5126 2.1474 37 1 1.7302 -0.1848 2.1392 38 1 1.6393 -1.7379 1.2720 39 1 3.9425 -1.3415 2.0609 40 1 3.9788 0.2233 1.2132 41 1 3.9395 -1.3405 -2.0652 42 1 3.9769 0.2240 -1.2168 43 1 1.6375 -1.7373 -1.2731 44 1 1.7271 -0.1838 -2.1396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272128895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:03 Heat of formation + Delta-G solvation = -95.131209 kcal Electronic energy + Delta-G solvation = -27279.887655 eV Core-core repulsion = 23390.272252 eV Total energy + Delta-G solvation = -3889.615403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09295 -40.84388 -39.92544 -38.28165 -36.61022 -35.53900 -34.26216 -32.96753 -32.13444 -31.04226 -29.74450 -29.33440 -27.32106 -24.73203 -24.49860 -23.74154 -23.13280 -22.16448 -20.58339 -19.90707 -19.60296 -18.91424 -17.50139 -16.99284 -16.90649 -16.78763 -16.58837 -16.32507 -16.06172 -15.89596 -15.61816 -15.47110 -15.42311 -14.82096 -14.40884 -14.22809 -13.85803 -13.65247 -13.58091 -13.32542 -13.22929 -12.97470 -12.89431 -12.87685 -12.66207 -12.34782 -12.29532 -12.09022 -11.75097 -11.47514 -11.34585 -11.18773 -10.87204 -10.76679 -10.58570 -10.07751 -9.27112 -8.82036 -8.46321 -6.15435 0.49723 0.73219 1.34282 1.43510 1.52593 1.54654 2.09360 2.18519 2.85872 2.93516 3.07876 3.20476 3.53351 3.63017 3.77584 3.83748 4.00528 4.16241 4.22392 4.38701 4.39682 4.44727 4.53595 4.67229 4.69074 4.72026 4.73739 4.76190 4.79137 4.91040 5.00981 5.07727 5.10159 5.12842 5.13927 5.28828 5.42641 5.51229 5.55626 5.66342 5.77033 6.00947 6.04582 6.23620 6.24771 6.97711 7.02602 7.54392 7.81245 8.77876 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.002950 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.103804 B = 9490.801689 C =10298.180122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.193 3.807 3 N -0.717 5.717 4 C 0.696 3.304 5 O -0.602 6.602 6 N -0.668 5.668 7 C 0.208 3.792 8 C -0.207 4.207 9 C -0.048 4.048 10 C -0.258 4.258 11 C 0.128 3.872 12 O -0.236 6.236 13 C -0.411 4.411 14 H 0.105 0.895 15 C -0.028 4.028 16 N -0.924 5.924 17 Si 1.023 2.977 18 H -0.247 1.247 19 H -0.267 1.267 20 H -0.270 1.270 21 C -0.212 4.212 22 C -0.168 4.168 23 C 0.072 3.928 24 O -0.396 6.396 25 C 0.054 3.946 26 C -0.146 4.146 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.412 0.588 31 H 0.425 0.575 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.272 0.728 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.118 0.882 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.519 -7.511 -14.943 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.107 3.893 3 N -0.375 5.375 4 C 0.396 3.604 5 O -0.480 6.480 6 N -0.318 5.318 7 C 0.112 3.888 8 C -0.228 4.228 9 C -0.066 4.066 10 C -0.278 4.278 11 C 0.077 3.923 12 O -0.143 6.143 13 C -0.487 4.487 14 H 0.122 0.878 15 C -0.224 4.224 16 N -0.563 5.563 17 Si 0.842 3.158 18 H -0.171 1.171 19 H -0.192 1.192 20 H -0.195 1.195 21 C -0.234 4.234 22 C -0.206 4.206 23 C -0.005 4.005 24 O -0.315 6.315 25 C -0.022 4.022 26 C -0.184 4.184 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.250 0.750 31 H 0.265 0.735 32 H 0.180 0.820 33 H 0.176 0.824 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.605 -8.307 -14.250 24.124 hybrid contribution -0.760 0.793 0.297 1.138 sum 16.845 -7.514 -13.953 23.127 Atomic orbital electron populations 1.22199 0.95068 1.02744 1.02118 1.20232 0.93472 0.79336 0.96238 1.45104 1.56299 1.11527 1.24532 1.16203 0.80218 0.80899 0.83033 1.90981 1.42548 1.76068 1.38435 1.42331 1.49598 1.08466 1.31375 1.17029 0.90463 0.90806 0.90508 1.20836 1.00282 0.99122 1.02552 1.21014 0.93683 0.97832 0.94073 1.21308 0.96735 1.02357 1.07426 1.19668 0.85787 0.93992 0.92863 1.83963 1.26052 1.57832 1.46468 1.21915 0.96601 1.21704 1.08488 0.87796 1.26692 0.93929 0.99530 1.02287 1.70230 1.03036 1.39928 1.43098 0.84480 0.79267 0.76778 0.75314 1.17050 1.19198 1.19539 1.20041 0.97060 1.02471 1.03788 1.22590 0.97409 1.01338 0.99307 1.22430 0.92931 0.97306 0.87828 1.87923 1.77195 1.52009 1.14377 1.22822 0.93069 0.98610 0.87719 1.22474 0.97351 1.02244 0.96365 0.91837 0.90508 0.94094 0.75031 0.73546 0.81982 0.82363 0.86091 0.91936 0.88507 0.91794 0.90000 0.88772 0.93477 0.86363 0.92049 0.88669 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 8.42 71.98 0.61 -3.38 16 2 C 0.19 3.81 0.66 3.72 0.00 3.82 16 3 N -0.72 -13.85 4.23 -437.46 -1.85 -15.70 16 4 C 0.70 20.68 7.72 179.06 1.38 22.06 16 5 O -0.60 -25.03 10.25 -4.01 -0.04 -25.07 16 6 N -0.67 -17.54 5.35 -317.24 -1.70 -19.24 16 7 C 0.21 7.42 6.28 38.13 0.24 7.66 16 8 C -0.21 -6.14 9.96 22.42 0.22 -5.91 16 9 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 10 C -0.26 -11.51 9.13 22.42 0.20 -11.31 16 11 C 0.13 6.86 6.64 22.56 0.15 7.01 16 12 O -0.24 -15.29 9.76 -22.80 -0.22 -15.51 16 13 C -0.41 -25.06 9.44 67.92 0.64 -24.42 16 14 H 0.10 5.76 5.30 -2.91 -0.02 5.74 16 15 C -0.03 -1.64 5.49 84.83 0.47 -1.17 16 16 N -0.92 -59.53 13.67 21.61 0.30 -59.23 16 17 Si 1.02 44.39 29.55 68.60 2.03 46.42 16 18 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 C -0.21 -10.26 8.60 22.51 0.19 -10.06 16 22 C -0.17 -3.90 4.77 30.68 0.15 -3.75 16 23 C 0.07 1.43 6.68 72.01 0.48 1.91 16 24 O -0.40 -7.19 10.77 -148.98 -1.60 -8.80 16 25 C 0.05 0.59 6.67 72.01 0.48 1.07 16 26 C -0.15 -1.70 4.96 30.68 0.15 -1.54 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.41 6.16 -2.39 -0.01 1.39 16 30 H 0.41 4.61 7.54 -92.71 -0.70 3.91 16 31 H 0.43 6.67 8.83 -92.70 -0.82 5.85 16 32 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.12 5.43 5.71 -2.91 -0.02 5.41 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.10 5.28 6.41 -2.91 -0.02 5.26 16 37 H 0.06 2.02 6.14 -2.39 -0.01 2.00 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 0.94 7.75 -2.39 -0.02 0.93 16 41 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.51 7.09 -2.38 -0.02 0.50 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -86.35 352.69 2.03 -84.31 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.47 Total: 32.19 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.59 Total: -19.36 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -3.25 Total: -94.17 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -1.87 Total: -49.38 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -86.35 2.03 -84.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272128895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.818 kcal (2) G-P(sol) polarization free energy of solvation -86.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds