Wall clock time and date at job start Tue Mar 31 2020 12:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34770 * 116.99950 * 2 1 4 4 O 1.21533 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47249 * 119.99628 * 179.97438 * 3 2 1 6 6 C 1.38286 * 126.47341 * 270.02063 * 5 3 2 7 7 C 1.50696 * 125.80570 * 359.97438 * 6 5 3 8 8 N 1.34223 * 108.38638 * 180.24630 * 6 5 3 9 9 H 0.97000 * 125.38384 * 179.71825 * 8 6 5 10 10 C 1.37792 * 109.23390 * 359.57413 * 8 6 5 11 11 C 1.46824 * 125.84043 * 180.13824 * 10 8 6 12 12 O 1.21670 * 120.00360 * 175.66542 * 11 10 8 13 13 N 1.34776 * 119.99578 * 355.66603 * 11 10 8 14 14 C 1.46502 * 119.99865 * 185.78465 * 13 11 10 15 15 C 1.52997 * 109.47386 * 183.68864 * 14 13 11 16 16 C 1.50704 * 115.55054 * 306.40972 * 15 14 13 17 17 H 1.08000 * 120.00045 * 145.10950 * 16 15 14 18 18 C 1.37870 * 120.00088 * 325.11151 * 16 15 14 19 19 N 1.31517 * 120.00030 * 349.43823 * 18 16 15 20 20 Si 1.86797 * 120.00457 * 169.44117 * 18 16 15 21 21 H 1.48504 * 109.46850 * 59.99775 * 20 18 16 22 22 H 1.48501 * 109.47681 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46978 * 300.00144 * 20 18 16 24 24 C 1.53002 * 117.50274 * 160.73901 * 15 14 13 25 25 C 1.53002 * 117.49868 * 92.08003 * 15 14 13 26 26 C 1.36320 * 108.32343 * 0.42946 * 10 8 6 27 27 C 1.50705 * 126.50128 * 179.74610 * 26 10 8 28 28 H 1.09003 * 109.47162 * 60.00215 * 1 2 3 29 29 H 1.08993 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47040 * 300.00384 * 1 2 3 31 31 H 1.08998 * 109.46875 * 90.00248 * 7 6 5 32 32 H 1.08991 * 109.47393 * 330.00206 * 7 6 5 33 33 H 1.09004 * 109.47051 * 209.99661 * 7 6 5 34 34 H 0.97004 * 120.00759 * 5.78145 * 13 11 10 35 35 H 1.09005 * 109.47183 * 303.69082 * 14 13 11 36 36 H 1.09007 * 109.47562 * 63.68877 * 14 13 11 37 37 H 0.97000 * 120.00619 * 185.02896 * 19 18 16 38 38 H 1.09005 * 117.49279 * 0.02562 * 24 15 14 39 39 H 1.08999 * 117.50089 * 145.01782 * 24 15 14 40 40 H 1.09004 * 117.49683 * 214.98347 * 25 15 14 41 41 H 1.09003 * 117.49666 * 359.97438 * 25 15 14 42 42 H 1.08996 * 109.47011 * 269.99778 * 27 26 10 43 43 H 1.08995 * 109.47127 * 30.00097 * 27 26 10 44 44 H 1.09001 * 109.46922 * 150.00385 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5343 1.2778 0.0006 6 6 4.3548 1.3206 1.1129 7 6 3.8961 1.2969 2.5482 8 7 5.6288 1.3928 0.6967 9 1 6.4067 1.4386 1.2744 10 6 5.6572 1.3884 -0.6809 11 6 6.8631 1.4520 -1.5161 12 8 6.7707 1.3619 -2.7260 13 7 8.0724 1.6102 -0.9426 14 6 9.2603 1.8007 -1.7786 15 6 10.5045 1.8623 -0.8904 16 6 10.4569 2.8735 0.2260 17 1 10.9296 2.6558 1.1723 18 6 9.8098 4.0765 0.0393 19 7 9.4163 4.4317 -1.1644 20 14 9.4919 5.2021 1.4957 21 1 10.7852 5.5832 2.1182 22 1 8.7859 6.4237 1.0326 23 1 8.6514 4.4939 2.4945 24 6 11.8593 1.6053 -1.5534 25 6 11.2489 0.5520 -0.6254 26 6 4.3739 1.3216 -1.1359 27 6 3.9337 1.2986 -2.5770 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.8390 0.2650 2.8943 32 1 2.9124 1.7602 2.6230 33 1 4.6054 1.8484 3.1654 34 1 8.1564 1.5980 0.0237 35 1 9.3519 0.9673 -2.4751 36 1 9.1661 2.7322 -2.3370 37 1 9.0270 5.3084 -1.3085 38 1 11.8641 1.3928 -2.6225 39 1 12.7161 2.1674 -1.1819 40 1 11.7044 0.4216 0.3563 41 1 10.8518 -0.3539 -1.0836 42 1 3.7741 2.3193 -2.9245 43 1 4.7042 0.8242 -3.1847 44 1 3.0044 0.7357 -2.6641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435956685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:49 Heat of formation + Delta-G solvation = -79.216042 kcal Electronic energy + Delta-G solvation = -27316.335581 eV Core-core repulsion = 23427.410312 eV Total energy + Delta-G solvation = -3888.925269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.83964 -41.10635 -40.09598 -38.42425 -37.41312 -35.10582 -34.19742 -33.95733 -32.78910 -29.54124 -28.68830 -28.30980 -27.58262 -26.48425 -24.27966 -22.98817 -22.27341 -21.21892 -20.93697 -20.40504 -19.43738 -18.43616 -18.14642 -17.38296 -17.10150 -16.78949 -16.58131 -16.41088 -16.24218 -15.61543 -15.21407 -14.82727 -14.61303 -14.52660 -14.27664 -14.12715 -14.03551 -13.75451 -13.60011 -13.44419 -13.22935 -13.20449 -12.98757 -12.86599 -12.69401 -12.62193 -12.33686 -12.05958 -11.80674 -11.78021 -11.47697 -11.10473 -10.87962 -10.65584 -10.16304 -10.02240 -9.81087 -9.18771 -8.04251 -6.21210 0.39041 0.98814 1.02516 1.39579 1.44847 1.51426 1.73534 2.06136 2.27556 2.38631 2.50562 3.02660 3.62586 3.64340 3.85521 3.87511 4.00869 4.23612 4.28736 4.35542 4.36802 4.42600 4.52509 4.61788 4.66759 4.72162 4.73939 4.74553 4.78458 4.92937 4.96456 4.99284 5.08771 5.13059 5.27199 5.31718 5.44194 5.51363 5.58205 5.63909 5.74674 5.90996 6.25359 6.36171 6.67402 6.71509 6.87151 7.32789 7.42398 8.89352 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.003751 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.060911 B = 7462.590520 C = 8225.867893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.354 6.354 3 C 0.561 3.439 4 O -0.528 6.528 5 C -0.246 4.246 6 C 0.128 3.872 7 C -0.096 4.096 8 N -0.509 5.509 9 H 0.435 0.565 10 C -0.062 4.062 11 C 0.576 3.424 12 O -0.577 6.577 13 N -0.682 5.682 14 C 0.175 3.825 15 C 0.011 3.989 16 C -0.509 4.509 17 H 0.063 0.937 18 C 0.040 3.960 19 N -0.891 5.891 20 Si 0.940 3.060 21 H -0.276 1.276 22 H -0.299 1.299 23 H -0.256 1.256 24 C -0.200 4.200 25 C -0.185 4.185 26 C -0.048 4.048 27 C -0.090 4.090 28 H 0.060 0.940 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.401 0.599 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.258 0.742 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 -9.669 8.327 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.405 3.595 4 O -0.417 6.417 5 C -0.253 4.253 6 C 0.004 3.996 7 C -0.153 4.153 8 N -0.106 5.106 9 H 0.276 0.724 10 C -0.173 4.173 11 C 0.364 3.636 12 O -0.458 6.458 13 N -0.329 5.329 14 C 0.052 3.948 15 C 0.011 3.989 16 C -0.546 4.546 17 H 0.081 0.919 18 C -0.162 4.162 19 N -0.528 5.528 20 Si 0.767 3.233 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.180 1.180 24 C -0.238 4.238 25 C -0.222 4.222 26 C -0.055 4.055 27 C -0.147 4.147 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.960 -9.289 7.424 18.338 hybrid contribution 0.482 1.168 0.794 1.492 sum -13.478 -8.121 8.218 17.752 Atomic orbital electron populations 1.23640 0.74439 1.05938 1.02832 1.86688 1.25133 1.31800 1.83366 1.20184 0.87557 0.81309 0.70459 1.90827 1.67300 1.37218 1.46403 1.18336 0.89644 1.23487 0.93869 1.21110 0.82260 0.99311 0.96883 1.20748 1.03067 1.05733 0.85785 1.41575 1.08469 1.54688 1.05834 0.72401 1.19676 0.94502 1.20263 0.82827 1.17267 0.82423 0.77031 0.86927 1.90708 1.86470 1.53870 1.14801 1.45543 1.06264 1.70433 1.10674 1.20715 0.83051 0.99248 0.91825 1.19220 0.88738 0.94267 0.96716 1.20660 1.35279 1.00618 0.98080 0.91933 1.25544 0.94644 0.98816 0.97245 1.69999 1.41047 1.19971 1.21752 0.85884 0.78504 0.78378 0.80573 1.20162 1.22495 1.18012 1.22936 0.99709 1.04431 0.96752 1.22965 1.06267 0.92937 1.00006 1.19663 0.89974 1.00113 0.95792 1.20373 1.01766 1.02284 0.90287 0.92069 0.84791 0.91254 0.87020 0.89596 0.88322 0.76402 0.95452 0.90731 0.93210 0.90804 0.90596 0.89542 0.89799 0.91656 0.90443 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.57 113.37 1.20 1.56 16 2 O -0.35 -8.23 10.58 -56.81 -0.60 -8.84 16 3 C 0.56 15.98 7.14 70.19 0.50 16.48 16 4 O -0.53 -17.39 16.90 19.73 0.33 -17.06 16 5 C -0.25 -7.34 6.01 -20.13 -0.12 -7.46 16 6 C 0.13 3.14 7.21 42.20 0.30 3.44 16 7 C -0.10 -1.42 10.24 71.23 0.73 -0.69 16 8 N -0.51 -13.63 5.91 -171.65 -1.01 -14.64 16 9 H 0.43 9.52 8.15 -92.71 -0.76 8.76 16 10 C -0.06 -2.16 6.98 40.01 0.28 -1.88 16 11 C 0.58 24.03 7.78 86.49 0.67 24.70 16 12 O -0.58 -27.47 14.66 -4.25 -0.06 -27.53 16 13 N -0.68 -28.05 5.27 -466.94 -2.46 -30.51 16 14 C 0.18 8.08 4.75 86.38 0.41 8.49 16 15 C 0.01 0.50 2.00 -52.93 -0.11 0.40 16 16 C -0.51 -24.25 8.27 25.60 0.21 -24.04 16 17 H 0.06 2.92 7.84 -2.91 -0.02 2.90 16 18 C 0.04 1.95 5.13 84.65 0.43 2.38 16 19 N -0.89 -47.15 10.75 21.45 0.23 -46.92 16 20 Si 0.94 38.88 29.55 68.60 2.03 40.91 16 21 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 C -0.20 -8.34 9.96 30.62 0.30 -8.04 16 25 C -0.18 -7.02 9.92 30.62 0.30 -6.71 16 26 C -0.05 -1.63 6.21 -19.54 -0.12 -1.75 16 27 C -0.09 -2.95 9.69 71.24 0.69 -2.26 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.30 7.93 -2.39 -0.02 1.28 16 33 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.40 14.96 7.02 -92.71 -0.65 14.31 16 35 H 0.03 1.25 8.06 -2.38 -0.02 1.23 16 36 H 0.07 4.03 6.04 -2.38 -0.01 4.01 16 37 H 0.26 13.59 8.32 -92.71 -0.77 12.82 16 38 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 41 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.08 2.77 6.32 -2.39 -0.02 2.76 16 44 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 Total: -1.00 -66.02 375.92 3.78 -62.24 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.36 Total: 37.73 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.69 Total: 4.62 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -3.24 Total: -92.07 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.33 Total: -53.43 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -66.02 3.78 -62.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435956685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.977 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds