Wall clock time and date at job start Tue Mar 31 2020 13:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.63278 * 2 1 4 4 O 1.43757 * 109.62749 * 120.39621 * 2 1 3 5 5 C 1.44789 * 104.81848 * 95.56236 * 4 2 1 6 6 C 1.54919 * 101.71767 * 36.10010 * 5 4 2 7 7 H 1.09003 * 110.68834 * 83.01192 * 6 5 4 8 8 C 1.53002 * 110.69085 * 206.03863 * 6 5 4 9 9 N 1.46500 * 109.47007 * 185.00055 * 8 6 5 10 10 C 1.34775 * 120.00404 * 179.97438 * 9 8 6 11 11 O 1.21586 * 119.99519 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00385 * 179.72627 * 10 9 8 13 13 C 1.39235 * 119.99930 * 174.92392 * 12 10 9 14 14 C 1.39483 * 119.83388 * 325.31561 * 13 12 10 15 15 C 1.36375 * 120.16784 * 179.76204 * 14 13 12 16 16 C 1.40874 * 119.82923 * 0.49447 * 15 14 13 17 17 C 1.41154 * 120.16456 * 179.78568 * 16 15 14 18 18 H 1.08000 * 119.99728 * 205.34024 * 17 16 15 19 19 C 1.39891 * 120.00056 * 25.33634 * 17 16 15 20 20 N 1.30875 * 119.99924 * 16.84532 * 19 17 16 21 21 Si 1.86803 * 119.99965 * 196.84497 * 19 17 16 22 22 H 1.48499 * 109.46961 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47008 * 119.99717 * 21 19 17 24 24 H 1.48497 * 109.47134 * 240.00202 * 21 19 17 25 25 C 1.40873 * 119.66938 * 359.76064 * 16 15 14 26 26 C 1.36373 * 119.83020 * 0.02562 * 25 16 15 27 27 O 1.43368 * 109.62941 * 239.75372 * 2 1 3 28 28 H 1.08997 * 109.46868 * 301.06630 * 1 2 3 29 29 H 1.09002 * 109.46911 * 61.05792 * 1 2 3 30 30 H 1.08997 * 109.47571 * 181.06046 * 1 2 3 31 31 H 1.08998 * 109.47063 * 178.93843 * 3 2 1 32 32 H 1.08997 * 109.47264 * 298.93607 * 3 2 1 33 33 H 1.08995 * 109.47235 * 58.93956 * 3 2 1 34 34 H 1.08998 * 110.97331 * 277.99483 * 5 4 2 35 35 H 1.08993 * 111.01159 * 154.22331 * 5 4 2 36 36 H 1.09001 * 109.46967 * 65.00874 * 8 6 5 37 37 H 1.08993 * 109.47665 * 305.00374 * 8 6 5 38 38 H 0.97009 * 119.99758 * 0.02562 * 9 8 6 39 39 H 0.97006 * 119.99755 * 354.91799 * 12 10 9 40 40 H 1.07995 * 119.91698 * 0.02562 * 14 13 12 41 41 H 1.07994 * 120.08708 * 180.27543 * 15 14 13 42 42 H 0.97001 * 120.00126 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.08552 * 180.02562 * 25 16 15 44 44 H 1.08002 * 119.91329 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 8 2.0128 -0.6851 1.1679 5 6 2.2650 -2.0402 0.7246 6 6 2.7883 -1.8080 -0.7150 7 1 3.8514 -1.5675 -0.7041 8 6 2.5221 -3.0337 -1.5912 9 7 3.1312 -2.8338 -2.9085 10 6 3.0249 -3.7900 -3.8523 11 8 2.4230 -4.8184 -3.6105 12 7 3.5805 -3.6038 -5.0660 13 6 3.5628 -4.6318 -6.0049 14 6 3.6757 -5.9571 -5.5849 15 6 3.6543 -6.9696 -6.4983 16 6 3.5282 -6.6736 -7.8698 17 6 3.5098 -7.7158 -8.8216 18 1 3.8201 -7.5242 -9.8381 19 6 3.0898 -8.9968 -8.4481 20 7 2.4126 -9.1666 -7.3411 21 14 3.4954 -10.4651 -9.5294 22 1 4.2644 -10.0091 -10.7151 23 1 4.3085 -11.4388 -8.7573 24 1 2.2365 -11.1145 -9.9750 25 6 3.4200 -5.3323 -8.2866 26 6 3.4386 -4.3308 -7.3611 27 8 2.0116 -0.6802 -1.1665 28 1 -0.3633 0.5303 0.8803 29 1 -0.3633 0.4973 -0.8993 30 1 -0.3634 -1.0274 0.0190 31 1 3.1338 1.4380 0.0190 32 1 1.6978 1.9503 -0.8993 33 1 1.6667 1.9613 0.8803 34 1 1.3455 -2.6253 0.7159 35 1 3.0240 -2.5189 1.3432 36 1 1.4469 -3.1720 -1.7054 37 1 2.9542 -3.9171 -1.1214 38 1 3.6117 -2.0134 -3.1012 39 1 3.9926 -2.7535 -5.2854 40 1 3.7761 -6.1823 -4.5335 41 1 3.7374 -7.9955 -6.1713 42 1 2.1217 -10.0549 -7.0819 43 1 3.3226 -5.0977 -9.3363 44 1 3.3561 -3.3020 -7.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769235957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:23 Heat of formation + Delta-G solvation = -96.438227 kcal Electronic energy + Delta-G solvation = -26174.296201 eV Core-core repulsion = 22284.624122 eV Total energy + Delta-G solvation = -3889.672079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04922 -39.76690 -37.45028 -35.74017 -34.83272 -34.28022 -33.16248 -32.71065 -29.99959 -29.41896 -28.72265 -27.80955 -25.98861 -24.53851 -22.30884 -21.60982 -21.38399 -21.01843 -19.90742 -18.03510 -17.82545 -17.26958 -16.88178 -16.56477 -15.54431 -15.46290 -15.13849 -15.07082 -14.52500 -14.10760 -13.92638 -13.87706 -13.69559 -13.15624 -13.01736 -12.83776 -12.69707 -12.57084 -12.51951 -12.36258 -12.05812 -12.02938 -11.78800 -11.60676 -11.43312 -11.10791 -10.88095 -10.56278 -10.47406 -10.02174 -9.94600 -9.84263 -9.50089 -9.22965 -8.91091 -8.65376 -7.46838 -6.93171 -6.67648 -4.23543 2.71296 2.88879 3.02245 3.10787 3.12169 3.16419 3.19174 3.54009 3.76710 3.97659 4.14840 4.33080 4.42057 4.57354 4.61910 4.70506 4.73853 4.92553 5.08281 5.16169 5.20595 5.27694 5.34525 5.50525 5.55782 5.69552 5.75704 5.75728 5.80697 6.20143 6.41664 6.56683 6.74308 6.85632 6.87341 7.10124 7.16201 7.34383 7.40007 7.66876 7.90480 8.05654 8.11057 8.31913 8.53632 8.68724 8.94280 8.97942 9.16923 10.25146 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.002131 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.548223 B =13137.188394 C =13561.939270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.248 3.752 3 C -0.153 4.153 4 O -0.372 6.372 5 C 0.025 3.975 6 C 0.040 3.960 7 H 0.094 0.906 8 C 0.146 3.854 9 N -0.749 5.749 10 C 0.694 3.306 11 O -0.575 6.575 12 N -0.667 5.667 13 C 0.015 3.985 14 C -0.086 4.086 15 C -0.154 4.154 16 C 0.104 3.896 17 C -0.460 4.460 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.791 5.791 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.214 4.214 26 C -0.107 4.107 27 O -0.369 6.369 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.395 0.605 39 H 0.390 0.610 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.280 0.720 43 H 0.095 0.905 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 16.276 15.054 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.172 3.828 3 C -0.211 4.211 4 O -0.293 6.293 5 C -0.052 4.052 6 C -0.018 4.018 7 H 0.111 0.889 8 C 0.021 3.979 9 N -0.407 5.407 10 C 0.395 3.605 11 O -0.452 6.452 12 N -0.313 5.313 13 C -0.077 4.077 14 C -0.106 4.106 15 C -0.174 4.174 16 C 0.101 3.899 17 C -0.490 4.490 18 H 0.096 0.904 19 C -0.144 4.144 20 N -0.416 5.416 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.234 4.234 26 C -0.128 4.128 27 O -0.290 6.290 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.228 0.772 39 H 0.223 0.777 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.004 15.285 15.441 21.727 hybrid contribution 0.390 0.036 -0.586 0.705 sum 0.394 15.321 14.856 21.344 Atomic orbital electron populations 1.22375 0.93697 1.03526 1.03324 1.23418 0.93112 0.91455 0.74841 1.22064 1.02413 0.93347 1.03248 1.89262 1.86024 1.21810 1.32157 1.24313 1.02044 0.85099 0.93711 1.24051 0.97021 0.86965 0.93742 0.88873 1.21165 0.99646 0.94950 0.82171 1.44944 1.61412 1.21164 1.13185 1.15979 0.80077 0.83630 0.80830 1.90953 1.46398 1.27676 1.80161 1.42087 1.60141 1.16506 1.12528 1.16968 1.16952 0.86861 0.86952 1.20421 1.00337 0.91305 0.98579 1.20983 1.05307 0.98193 0.92889 1.17665 0.87962 0.91568 0.92722 1.19546 1.38839 0.93131 0.97462 0.90423 1.25930 0.92605 1.00539 0.95363 1.69873 1.25332 1.24540 1.21838 0.86280 0.79072 0.80695 0.80756 1.18446 1.19763 1.20064 1.20538 1.12732 0.92987 0.97179 1.20025 1.03683 0.97431 0.91635 1.88975 1.69345 1.41442 1.29282 0.90686 0.90583 0.91668 0.91459 0.90365 0.90757 0.89999 0.86828 0.90709 0.89951 0.77177 0.77673 0.88129 0.86251 0.90919 0.88663 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.20 37.16 0.34 -1.03 16 2 C 0.25 2.23 1.47 -26.74 -0.04 2.19 16 3 C -0.15 -1.12 9.24 37.15 0.34 -0.77 16 4 O -0.37 -3.51 11.01 -59.04 -0.65 -4.16 16 5 C 0.03 0.19 7.36 38.17 0.28 0.47 16 6 C 0.04 0.35 3.72 -25.72 -0.10 0.25 16 7 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 8 C 0.15 1.64 5.42 -4.04 -0.02 1.62 16 9 N -0.75 -9.82 5.56 -65.23 -0.36 -10.18 16 10 C 0.69 12.83 8.28 -86.92 -0.72 12.11 16 11 O -0.58 -13.38 14.09 5.29 0.07 -13.30 16 12 N -0.67 -12.14 5.31 -14.10 -0.07 -12.21 16 13 C 0.02 0.35 6.26 -83.57 -0.52 -0.18 16 14 C -0.09 -2.19 8.57 -39.79 -0.34 -2.53 16 15 C -0.15 -4.19 8.63 -39.26 -0.34 -4.53 16 16 C 0.10 2.82 5.57 -106.80 -0.59 2.23 16 17 C -0.46 -12.38 9.04 -37.86 -0.34 -12.72 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 19 C 0.07 1.88 5.15 -17.34 -0.09 1.80 16 20 N -0.79 -21.21 10.94 55.54 0.61 -20.60 16 21 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 26 C -0.11 -2.41 9.90 -39.79 -0.39 -2.80 16 27 O -0.37 -3.81 10.57 -59.04 -0.62 -4.43 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.39 4.09 8.49 -40.82 -0.35 3.74 16 39 H 0.39 5.51 8.83 -40.82 -0.36 5.15 16 40 H 0.10 2.57 6.49 -52.49 -0.34 2.23 16 41 H 0.12 3.37 6.17 -52.49 -0.32 3.04 16 42 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 43 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 44 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -33.03 367.69 -9.85 -42.88 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.41 Total: 12.08 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.92 Total: -9.56 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.17 Total: -42.99 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.20 Total: -21.89 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.03 -9.85 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769235957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.559 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds