Wall clock time and date at job start Tue Mar 31 2020 12:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.52758 * 2 1 4 4 C 1.34775 * 119.99814 * 60.12027 * 3 2 1 5 5 O 1.21588 * 120.00257 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99809 * 180.02562 * 4 3 2 7 7 C 1.39939 * 119.99893 * 174.96553 * 6 4 3 8 8 C 1.38954 * 120.03603 * 146.40356 * 7 6 4 9 9 C 1.38167 * 120.06966 * 179.97438 * 8 7 6 10 10 C 1.38168 * 120.13432 * 0.02562 * 9 8 7 11 11 C 1.38906 * 120.07238 * 359.97434 * 10 9 8 12 12 O 1.35748 * 120.03402 * 180.02562 * 11 10 9 13 13 C 1.34832 * 117.00444 * 5.91907 * 12 11 10 14 14 H 1.07999 * 119.99462 * 5.40259 * 13 12 11 15 15 C 1.38644 * 120.00141 * 185.40713 * 13 12 11 16 16 N 1.31556 * 120.00441 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99775 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47326 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47314 * 119.99768 * 17 15 13 20 20 H 1.48498 * 109.47055 * 239.99687 * 17 15 13 21 21 C 1.38709 * 120.03260 * 326.12343 * 7 6 4 22 22 C 1.53181 * 109.57454 * 239.84117 * 2 1 3 23 23 C 1.53174 * 109.03525 * 183.08625 * 22 2 1 24 24 C 1.53098 * 109.16647 * 56.98001 * 23 22 2 25 25 O 1.42899 * 109.41271 * 302.39007 * 24 23 22 26 26 C 1.42908 * 114.09846 * 61.15673 * 25 24 23 27 27 H 1.09002 * 109.46887 * 60.00016 * 1 2 3 28 28 H 1.08993 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47281 * 300.00332 * 1 2 3 30 30 H 0.97003 * 120.00220 * 240.13065 * 3 2 1 31 31 H 0.96996 * 119.99860 * 354.68201 * 6 4 3 32 32 H 1.08002 * 119.97209 * 359.97096 * 8 7 6 33 33 H 1.07997 * 119.93146 * 179.97438 * 9 8 7 34 34 H 1.07994 * 119.96284 * 179.97438 * 10 9 8 35 35 H 0.96996 * 120.00070 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.07203 * 0.02562 * 21 7 6 37 37 H 1.08997 * 109.54334 * 302.95028 * 22 2 1 38 38 H 1.08996 * 109.54473 * 63.21453 * 22 2 1 39 39 H 1.09003 * 109.52226 * 297.07261 * 23 22 2 40 40 H 1.09006 * 109.57506 * 176.91427 * 23 22 2 41 41 H 1.08997 * 109.47950 * 182.40601 * 24 23 22 42 42 H 1.09000 * 109.47730 * 62.37449 * 24 23 22 43 43 H 1.09000 * 109.48194 * 178.85770 * 26 25 24 44 44 H 1.08999 * 109.47605 * 58.82558 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3808 0.0000 4 6 1.6969 2.2102 1.0121 5 8 0.9996 1.8124 1.9253 6 7 2.1469 3.4806 1.0118 7 6 1.7271 4.3719 2.0056 8 6 2.5929 5.3548 2.4694 9 6 2.1789 6.2354 3.4502 10 6 0.9035 6.1415 3.9733 11 6 0.0332 5.1612 3.5139 12 8 -1.2198 5.0699 4.0280 13 6 -1.5993 6.0341 4.8907 14 1 -0.9511 6.8776 5.0769 15 6 -2.8215 5.9426 5.5388 16 7 -3.6113 4.9152 5.3117 17 14 -3.3475 7.2787 6.7335 18 1 -2.2890 8.3175 6.8119 19 1 -4.6129 7.8956 6.2606 20 1 -3.5584 6.6853 8.0783 21 6 0.4441 4.2787 2.5246 22 6 2.0432 -0.7251 -1.2479 23 6 3.5729 -0.7856 -1.1969 24 6 4.0056 -1.4795 0.0974 25 8 3.4695 -0.7724 1.2175 26 6 2.0415 -0.7242 1.2481 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.5761 1.6981 -0.7285 31 1 2.7651 3.7760 0.3252 32 1 3.5906 5.4305 2.0628 33 1 2.8538 6.9982 3.8093 34 1 0.5829 6.8310 4.7401 35 1 -4.4662 4.8511 5.7654 36 1 -0.2321 3.5183 2.1629 37 1 1.6389 -1.7370 -1.2738 38 1 1.7292 -0.1828 -2.1397 39 1 3.9784 0.2259 -1.2211 40 1 3.9449 -1.3479 -2.0535 41 1 5.0937 -1.4873 0.1594 42 1 3.6337 -2.5041 0.1024 43 1 1.7149 -0.1879 2.1390 44 1 1.6440 -1.7389 1.2682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772247115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:09 Heat of formation + Delta-G solvation = -96.225372 kcal Electronic energy + Delta-G solvation = -27266.963024 eV Core-core repulsion = 23377.300175 eV Total energy + Delta-G solvation = -3889.662849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02926 -40.82957 -39.91492 -38.23616 -36.44092 -35.52728 -34.25339 -33.54074 -32.37125 -31.01854 -29.65594 -27.92279 -27.31201 -26.13949 -24.39267 -23.35204 -22.96248 -22.07798 -20.64724 -19.88810 -19.63374 -18.90481 -17.67938 -17.01382 -16.88368 -16.76370 -16.59095 -16.23655 -15.97079 -15.74545 -15.53855 -15.45370 -15.32901 -14.85243 -14.43061 -14.23441 -13.91526 -13.61567 -13.57961 -13.38844 -13.23822 -12.93069 -12.92434 -12.82231 -12.64378 -12.34597 -12.10247 -12.07869 -11.83909 -11.47664 -11.32369 -11.21375 -10.80369 -10.73438 -10.69656 -9.92806 -9.26563 -8.80571 -8.45288 -6.14623 0.50907 0.73873 1.34829 1.44340 1.54344 1.56935 2.12503 2.19146 2.86260 2.92803 3.13713 3.21169 3.53073 3.64836 3.79133 3.83557 4.01974 4.16908 4.29716 4.38136 4.39869 4.45288 4.48923 4.66431 4.72165 4.73883 4.76036 4.77637 4.85018 4.92541 5.02290 5.04727 5.12069 5.14693 5.26524 5.29927 5.43721 5.52458 5.54597 5.66751 5.77431 6.02322 6.05367 6.25398 6.29440 6.98554 7.04778 7.56787 7.82250 8.78999 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.002956 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.512734 B = 9470.827098 C =10296.439725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.163 3.837 3 N -0.709 5.709 4 C 0.697 3.303 5 O -0.607 6.607 6 N -0.669 5.669 7 C 0.207 3.793 8 C -0.209 4.209 9 C -0.047 4.047 10 C -0.258 4.258 11 C 0.129 3.871 12 O -0.236 6.236 13 C -0.411 4.411 14 H 0.106 0.894 15 C -0.028 4.028 16 N -0.925 5.925 17 Si 1.024 2.976 18 H -0.247 1.247 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.211 4.211 22 C -0.116 4.116 23 C -0.150 4.150 24 C 0.045 3.955 25 O -0.400 6.400 26 C 0.049 3.951 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.411 0.589 31 H 0.425 0.575 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.122 0.878 35 H 0.272 0.728 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.923 -8.908 -17.200 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.076 3.924 3 N -0.366 5.366 4 C 0.398 3.602 5 O -0.486 6.486 6 N -0.318 5.318 7 C 0.112 3.888 8 C -0.229 4.229 9 C -0.066 4.066 10 C -0.278 4.278 11 C 0.078 3.922 12 O -0.143 6.143 13 C -0.487 4.487 14 H 0.123 0.877 15 C -0.225 4.225 16 N -0.563 5.563 17 Si 0.842 3.158 18 H -0.170 1.170 19 H -0.193 1.193 20 H -0.195 1.195 21 C -0.233 4.233 22 C -0.154 4.154 23 C -0.187 4.187 24 C -0.031 4.031 25 O -0.319 6.319 26 C -0.029 4.029 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.249 0.751 31 H 0.264 0.736 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.054 -9.507 -16.308 25.440 hybrid contribution -0.610 0.436 0.112 0.758 sum 16.443 -9.071 -16.196 24.799 Atomic orbital electron populations 1.22167 0.94478 1.03220 1.02424 1.20884 0.93918 0.80251 0.97319 1.44913 1.56319 1.11294 1.24043 1.16208 0.80109 0.80915 0.82996 1.90955 1.43257 1.76052 1.38293 1.42317 1.50078 1.08663 1.30753 1.17053 0.90582 0.90802 0.90393 1.20840 1.00176 0.99269 1.02666 1.21010 0.93814 0.97756 0.93986 1.21301 0.96527 1.03141 1.06862 1.19654 0.85534 0.94342 0.92703 1.83967 1.26168 1.48481 1.55672 1.21929 1.04203 1.01174 1.21437 0.87718 1.26704 0.94949 1.01001 0.99832 1.70233 1.11174 1.31660 1.43267 0.84470 0.78905 0.76186 0.76209 1.17006 1.19264 1.19494 1.20041 0.97225 1.03098 1.02953 1.21909 0.96333 1.01772 0.95346 1.22194 0.95187 1.02580 0.98788 1.22883 0.99704 0.95020 0.85510 1.87983 1.20020 1.76938 1.47001 1.23009 0.81209 0.99819 0.98845 0.91444 0.89837 0.94072 0.75136 0.73650 0.82133 0.82324 0.85999 0.91942 0.88480 0.88479 0.88815 0.91011 0.87791 0.87943 0.92220 0.90812 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 8.42 71.98 0.61 -3.34 16 2 C 0.16 3.34 0.68 3.69 0.00 3.34 16 3 N -0.71 -15.36 4.74 -437.59 -2.08 -17.43 16 4 C 0.70 22.52 7.72 179.05 1.38 23.91 16 5 O -0.61 -26.62 10.26 -3.99 -0.04 -26.66 16 6 N -0.67 -19.17 5.35 -317.23 -1.70 -20.87 16 7 C 0.21 7.80 6.27 38.13 0.24 8.04 16 8 C -0.21 -6.55 9.96 22.42 0.22 -6.32 16 9 C -0.05 -1.62 10.03 22.24 0.22 -1.40 16 10 C -0.26 -11.77 9.13 22.41 0.20 -11.57 16 11 C 0.13 7.03 6.64 22.56 0.15 7.18 16 12 O -0.24 -15.44 9.76 -22.74 -0.22 -15.66 16 13 C -0.41 -25.26 9.44 67.92 0.64 -24.62 16 14 H 0.11 5.83 5.29 -2.91 -0.02 5.81 16 15 C -0.03 -1.68 5.49 84.83 0.47 -1.22 16 16 N -0.92 -60.04 13.67 21.61 0.30 -59.75 16 17 Si 1.02 44.70 29.55 68.60 2.03 46.73 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 C -0.21 -10.52 8.60 22.51 0.19 -10.33 16 22 C -0.12 -1.26 4.86 30.71 0.15 -1.12 16 23 C -0.15 -1.36 5.95 30.69 0.18 -1.18 16 24 C 0.04 0.62 6.84 72.02 0.49 1.12 16 25 O -0.40 -9.75 10.67 -148.98 -1.59 -11.34 16 26 C 0.05 1.24 5.40 72.01 0.39 1.63 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.41 6.18 -2.39 -0.01 1.39 16 30 H 0.41 5.70 7.55 -92.71 -0.70 5.00 16 31 H 0.42 7.71 8.83 -92.71 -0.82 6.89 16 32 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 34 H 0.12 5.56 5.71 -2.91 -0.02 5.55 16 35 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.10 5.40 6.44 -2.91 -0.02 5.38 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.66 7.11 -2.39 -0.02 0.64 16 40 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 2.61 6.11 -2.39 -0.01 2.59 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -88.59 353.54 1.77 -86.81 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.47 Total: 34.06 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 5.54 Total: -15.87 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -3.48 Total: -98.05 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.85 Total: -53.67 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -88.59 1.77 -86.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772247115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.411 kcal (2) G-P(sol) polarization free energy of solvation -88.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds