Wall clock time and date at job start Tue Mar 31 2020 12:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38618 * 120.75403 * 2 1 4 4 C 1.38590 * 119.36105 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.54869 * 179.97438 * 4 3 2 6 6 N 1.31503 * 120.90092 * 359.97438 * 4 3 2 7 7 C 1.32748 * 121.64417 * 0.02562 * 6 4 3 8 8 C 1.48068 * 119.72778 * 179.97438 * 7 6 4 9 9 O 1.21428 * 120.00337 * 179.97438 * 8 7 6 10 10 O 1.34686 * 120.00009 * 0.02562 * 8 7 6 11 11 C 1.45190 * 117.00088 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47368 * 329.99853 * 11 10 8 13 13 C 1.53003 * 109.47293 * 89.99989 * 11 10 8 14 14 C 1.50703 * 109.47105 * 209.99712 * 11 10 8 15 15 O 1.21283 * 119.99897 * 345.90312 * 14 11 10 16 16 N 1.34780 * 120.00046 * 165.90106 * 14 11 10 17 17 C 1.46494 * 119.99924 * 4.21152 * 16 14 11 18 18 C 1.46497 * 119.99998 * 184.48528 * 16 14 11 19 19 C 1.50697 * 109.47173 * 269.72835 * 18 16 14 20 20 H 1.07997 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.37876 * 120.00054 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00039 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47262 * 59.99449 * 23 21 19 25 25 H 1.48495 * 109.47321 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46859 * 299.99626 * 23 21 19 27 27 C 1.38590 * 120.75451 * 180.25894 * 2 1 3 28 28 H 1.08999 * 109.47669 * 89.99869 * 1 2 3 29 29 H 1.09000 * 109.46997 * 210.00361 * 1 2 3 30 30 H 1.09005 * 109.47363 * 329.99847 * 1 2 3 31 31 H 1.08000 * 120.32366 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.46950 * 270.02095 * 5 4 3 33 33 H 1.09005 * 109.47117 * 30.01912 * 5 4 3 34 34 H 1.09001 * 109.47048 * 150.02312 * 5 4 3 35 35 H 1.08999 * 109.46773 * 292.29735 * 13 11 10 36 36 H 1.08990 * 109.47447 * 52.29731 * 13 11 10 37 37 H 1.09007 * 109.47024 * 172.30331 * 13 11 10 38 38 H 1.08998 * 109.47193 * 268.49342 * 17 16 14 39 39 H 1.09004 * 109.47193 * 28.49459 * 17 16 14 40 40 H 1.08997 * 109.47135 * 148.49484 * 17 16 14 41 41 H 1.09008 * 109.47110 * 29.72389 * 18 16 14 42 42 H 1.08996 * 109.47055 * 149.72270 * 18 16 14 43 43 H 0.97000 * 120.00098 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.47578 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1912 0.0000 4 6 3.6013 1.1575 -0.0005 5 6 4.3761 2.4500 -0.0011 6 7 4.2490 0.0131 -0.0005 7 6 3.6085 -1.1497 -0.0005 8 6 4.3805 -2.4132 -0.0011 9 8 3.7998 -3.4796 -0.0007 10 8 5.7270 -2.3797 -0.0011 11 6 6.4181 -3.6565 -0.0023 12 1 5.8084 -4.4002 0.5109 13 6 6.6608 -4.1038 -1.4452 14 6 7.7394 -3.5132 0.7082 15 8 8.1850 -2.4100 0.9432 16 7 8.4259 -4.6111 1.0824 17 6 7.9342 -5.9420 0.7178 18 6 9.6605 -4.4736 1.8589 19 6 10.8356 -4.3741 0.9207 20 1 10.6785 -4.4102 -0.1472 21 6 12.1113 -4.2382 1.4256 22 7 12.3027 -4.1948 2.7260 23 14 13.5680 -4.1156 0.2627 24 1 13.4017 -2.9301 -0.6160 25 1 14.8195 -3.9762 1.0498 26 1 13.6409 -5.3428 -0.5704 27 6 2.2157 -1.1910 -0.0054 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6935 2.1365 -0.0004 32 1 4.5622 2.7616 -1.0289 33 1 3.7999 3.2193 0.5131 34 1 5.3267 2.3041 0.5120 35 1 5.7073 -4.3392 -1.9179 36 1 7.1514 -3.3018 -1.9966 37 1 7.2966 -4.9893 -1.4491 38 1 7.2937 -6.3232 1.5131 39 1 7.3637 -5.8774 -0.2087 40 1 8.7795 -6.6158 0.5777 41 1 9.6067 -3.5728 2.4705 42 1 9.7829 -5.3438 2.5037 43 1 13.2002 -4.0988 3.0812 44 1 1.6959 -2.1376 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801446970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:02 Heat of formation + Delta-G solvation = -79.092532 kcal Electronic energy + Delta-G solvation = -26561.658758 eV Core-core repulsion = 22672.738844 eV Total energy + Delta-G solvation = -3888.919914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11348 -40.12234 -38.79695 -36.42083 -34.84291 -34.59165 -33.22394 -32.76522 -31.48327 -28.43808 -27.87639 -27.68183 -26.19439 -25.57959 -24.05372 -22.44587 -21.59316 -20.79938 -18.83557 -18.27213 -16.97141 -16.57139 -16.51244 -16.38669 -16.13022 -15.79888 -15.20639 -14.91175 -14.52307 -14.37075 -14.10180 -13.72266 -13.60983 -13.23926 -13.15522 -12.98451 -12.85228 -12.56672 -12.41246 -12.38599 -12.08971 -12.04247 -12.01040 -11.60873 -11.30914 -11.17049 -10.92667 -10.82607 -10.68147 -10.51357 -10.13411 -9.89891 -9.79717 -9.63195 -9.34531 -8.84188 -8.41374 -7.67639 -6.02349 -4.07037 0.24979 0.85753 2.24214 2.35996 3.29855 3.34353 3.38515 3.42827 3.48794 3.70972 3.98761 4.18233 4.41017 4.46956 4.58604 4.63607 4.82796 4.93038 5.01022 5.06413 5.09146 5.14888 5.22027 5.29272 5.32102 5.39192 5.43727 5.45474 5.63031 5.68987 5.75963 5.83512 5.86176 5.91402 6.10017 6.25503 6.29404 6.35174 7.01877 7.40512 7.42796 7.51642 7.77670 7.93591 8.23803 8.33950 8.89233 9.04005 9.57619 11.05869 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.002757 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.639267 B =10152.940944 C =10996.164843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.145 4.145 4 C 0.130 3.870 5 C -0.106 4.106 6 N -0.432 5.432 7 C 0.106 3.894 8 C 0.522 3.478 9 O -0.502 6.502 10 O -0.298 6.298 11 C 0.067 3.933 12 H 0.104 0.896 13 C -0.170 4.170 14 C 0.507 3.493 15 O -0.512 6.512 16 N -0.597 5.597 17 C 0.067 3.933 18 C 0.247 3.753 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C -0.116 4.116 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.606 6.869 -6.949 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.165 4.165 4 C -0.010 4.010 5 C -0.164 4.164 6 N -0.144 5.144 7 C -0.031 4.031 8 C 0.365 3.635 9 O -0.391 6.391 10 O -0.211 6.211 11 C 0.009 3.991 12 H 0.122 0.878 13 C -0.228 4.228 14 C 0.291 3.709 15 O -0.387 6.387 16 N -0.331 5.331 17 C -0.076 4.076 18 C 0.129 3.871 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.136 4.136 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.404 7.096 -6.656 25.346 hybrid contribution -0.020 -0.248 -0.592 0.642 sum -23.424 6.848 -7.248 25.458 Atomic orbital electron populations 1.20833 0.89326 1.03761 1.03230 1.20306 0.97224 0.92262 0.95957 1.22183 0.94817 0.99030 1.00479 1.21449 0.91080 0.93962 0.94522 1.20775 1.00876 0.91147 1.03564 1.67579 1.40565 0.97284 1.09004 1.19990 0.90224 0.90509 1.02340 1.20855 0.81933 0.88120 0.72628 1.90814 1.71201 1.30716 1.46334 1.86819 1.18266 1.34059 1.81998 1.22748 0.93291 0.84154 0.98941 0.87839 1.22305 1.03309 1.03359 0.93779 1.19735 0.84993 0.85581 0.80556 1.90726 1.68828 1.25136 1.54002 1.48069 1.26296 1.04254 1.54512 1.21966 1.00355 0.85735 0.99563 1.19338 0.78530 0.98431 0.90818 1.21378 0.91135 1.50653 0.93322 0.92403 1.24937 0.98917 0.95049 0.95215 1.69922 1.22324 1.50000 1.11188 0.86542 0.81406 0.78671 0.80708 1.20125 1.21187 1.20254 1.21952 0.92976 0.99959 0.98733 0.90182 0.90603 0.90659 0.84016 0.89992 0.90456 0.89600 0.91234 0.90523 0.88988 0.93438 0.91600 0.90279 0.93814 0.94634 0.92643 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.06 36.01 0.36 -0.19 16 2 C -0.05 -0.42 5.91 -104.35 -0.62 -1.03 16 3 C -0.15 -1.19 9.45 -39.31 -0.37 -1.56 16 4 C 0.13 1.44 6.78 -82.61 -0.56 0.88 16 5 C -0.11 -0.89 10.17 36.00 0.37 -0.52 16 6 N -0.43 -6.42 10.03 -6.07 -0.06 -6.48 16 7 C 0.11 1.53 6.75 -83.03 -0.56 0.97 16 8 C 0.52 8.60 7.92 34.76 0.28 8.88 16 9 O -0.50 -8.24 15.58 -19.21 -0.30 -8.54 16 10 O -0.30 -5.65 9.27 -47.01 -0.44 -6.09 16 11 C 0.07 1.20 2.17 -27.88 -0.06 1.14 16 12 H 0.10 1.67 6.70 -51.93 -0.35 1.33 16 13 C -0.17 -2.51 9.15 37.16 0.34 -2.17 16 14 C 0.51 11.43 7.00 -10.98 -0.08 11.35 16 15 O -0.51 -14.00 16.18 -13.67 -0.22 -14.22 16 16 N -0.60 -13.14 2.86 -182.96 -0.52 -13.66 16 17 C 0.07 1.09 9.86 59.84 0.59 1.68 16 18 C 0.25 6.61 5.14 -5.20 -0.03 6.58 16 19 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 23 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C -0.12 -1.26 9.34 -39.04 -0.36 -1.62 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.24 5.52 -51.93 -0.29 0.95 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.89 4.22 -51.93 -0.22 0.67 16 40 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 41 H 0.04 1.32 7.48 -51.92 -0.39 0.93 16 42 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.15 1.43 7.64 -52.49 -0.40 1.03 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -36.72 377.63 -7.51 -44.22 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.25 Total: -2.45 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -1.12 Total: 10.60 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.15 Total: -46.33 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.96 Total: -28.85 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.72 -7.51 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801446970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.869 kcal (2) G-P(sol) polarization free energy of solvation -36.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds