Wall clock time and date at job start Tue Mar 31 2020 12:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38618 * 120.75403 * 2 1 4 4 C 1.38590 * 119.36105 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.54869 * 179.97438 * 4 3 2 6 6 N 1.31503 * 120.90092 * 359.97438 * 4 3 2 7 7 C 1.32748 * 121.64417 * 0.02562 * 6 4 3 8 8 C 1.48068 * 119.72778 * 179.97438 * 7 6 4 9 9 O 1.21428 * 120.00337 * 179.97438 * 8 7 6 10 10 O 1.34686 * 120.00009 * 0.02562 * 8 7 6 11 11 C 1.45190 * 117.00088 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47368 * 329.99853 * 11 10 8 13 13 C 1.53003 * 109.47293 * 89.99989 * 11 10 8 14 14 C 1.50703 * 109.47105 * 209.99712 * 11 10 8 15 15 O 1.21283 * 119.99897 * 345.90312 * 14 11 10 16 16 N 1.34780 * 120.00046 * 165.90106 * 14 11 10 17 17 C 1.46494 * 119.99924 * 4.21152 * 16 14 11 18 18 C 1.46497 * 119.99998 * 184.48528 * 16 14 11 19 19 C 1.50697 * 109.47173 * 269.72835 * 18 16 14 20 20 H 1.07997 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.37876 * 120.00054 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00039 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47262 * 59.99449 * 23 21 19 25 25 H 1.48495 * 109.47321 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46859 * 299.99626 * 23 21 19 27 27 C 1.38590 * 120.75451 * 180.25894 * 2 1 3 28 28 H 1.08999 * 109.47669 * 89.99869 * 1 2 3 29 29 H 1.09000 * 109.46997 * 210.00361 * 1 2 3 30 30 H 1.09005 * 109.47363 * 329.99847 * 1 2 3 31 31 H 1.08000 * 120.32366 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.46950 * 270.02095 * 5 4 3 33 33 H 1.09005 * 109.47117 * 30.01912 * 5 4 3 34 34 H 1.09001 * 109.47048 * 150.02312 * 5 4 3 35 35 H 1.08999 * 109.46773 * 292.29735 * 13 11 10 36 36 H 1.08990 * 109.47447 * 52.29731 * 13 11 10 37 37 H 1.09007 * 109.47024 * 172.30331 * 13 11 10 38 38 H 1.08998 * 109.47193 * 268.49342 * 17 16 14 39 39 H 1.09004 * 109.47193 * 28.49459 * 17 16 14 40 40 H 1.08997 * 109.47135 * 148.49484 * 17 16 14 41 41 H 1.09008 * 109.47110 * 29.72389 * 18 16 14 42 42 H 1.08996 * 109.47055 * 149.72270 * 18 16 14 43 43 H 0.97000 * 120.00098 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.47578 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1912 0.0000 4 6 3.6013 1.1575 -0.0005 5 6 4.3761 2.4500 -0.0011 6 7 4.2490 0.0131 -0.0005 7 6 3.6085 -1.1497 -0.0005 8 6 4.3805 -2.4132 -0.0011 9 8 3.7998 -3.4796 -0.0007 10 8 5.7270 -2.3797 -0.0011 11 6 6.4181 -3.6565 -0.0023 12 1 5.8084 -4.4002 0.5109 13 6 6.6608 -4.1038 -1.4452 14 6 7.7394 -3.5132 0.7082 15 8 8.1850 -2.4100 0.9432 16 7 8.4259 -4.6111 1.0824 17 6 7.9342 -5.9420 0.7178 18 6 9.6605 -4.4736 1.8589 19 6 10.8356 -4.3741 0.9207 20 1 10.6785 -4.4102 -0.1472 21 6 12.1113 -4.2382 1.4256 22 7 12.3027 -4.1948 2.7260 23 14 13.5680 -4.1156 0.2627 24 1 13.4017 -2.9301 -0.6160 25 1 14.8195 -3.9762 1.0498 26 1 13.6409 -5.3428 -0.5704 27 6 2.2157 -1.1910 -0.0054 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6935 2.1365 -0.0004 32 1 4.5622 2.7616 -1.0289 33 1 3.7999 3.2193 0.5131 34 1 5.3267 2.3041 0.5120 35 1 5.7073 -4.3392 -1.9179 36 1 7.1514 -3.3018 -1.9966 37 1 7.2966 -4.9893 -1.4491 38 1 7.2937 -6.3232 1.5131 39 1 7.3637 -5.8774 -0.2087 40 1 8.7795 -6.6158 0.5777 41 1 9.6067 -3.5728 2.4705 42 1 9.7829 -5.3438 2.5037 43 1 13.2002 -4.0988 3.0812 44 1 1.6959 -2.1376 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801446970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:01 Heat of formation + Delta-G solvation = -102.787283 kcal Electronic energy + Delta-G solvation = -26562.686239 eV Core-core repulsion = 22672.738844 eV Total energy + Delta-G solvation = -3889.947395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.21595 -41.28764 -40.38414 -37.78112 -36.72374 -35.28497 -34.90048 -34.03068 -32.96305 -29.67400 -29.15073 -28.42839 -27.71986 -26.69517 -25.75538 -24.10107 -22.37484 -21.95873 -20.50275 -19.41158 -18.71057 -18.32440 -17.73157 -17.48114 -17.29243 -17.02044 -16.85795 -16.25907 -16.21732 -15.64646 -15.07083 -14.88619 -14.70892 -14.34526 -14.13979 -14.11149 -13.82134 -13.72866 -13.64613 -13.43270 -13.37461 -13.19730 -13.13663 -13.05369 -12.89419 -12.64635 -12.62377 -12.41296 -12.20248 -12.05478 -12.01200 -11.74039 -10.71138 -10.65525 -10.61346 -10.57915 -10.15256 -9.54982 -8.24014 -6.38624 -0.64602 0.11172 1.07697 1.18918 1.36072 1.41316 1.47871 1.57832 2.23442 2.40246 2.61711 2.94458 3.05891 3.34532 3.49799 3.59391 3.68341 3.77940 3.84004 3.93850 4.16190 4.24093 4.43206 4.48101 4.54852 4.57622 4.63800 4.68492 4.76433 4.82443 4.82765 4.89725 4.93135 5.06160 5.08423 5.10719 5.16645 5.22614 5.25513 5.49862 5.59016 5.76091 6.02085 6.28023 6.56227 6.69314 6.82678 7.17954 7.34342 8.83577 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.002757 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.639267 B =10152.940944 C =10996.164843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 C -0.127 4.127 4 C 0.111 3.889 5 C -0.105 4.105 6 N -0.482 5.482 7 C 0.069 3.931 8 C 0.519 3.481 9 O -0.509 6.509 10 O -0.326 6.326 11 C 0.076 3.924 12 H 0.124 0.876 13 C -0.163 4.163 14 C 0.499 3.501 15 O -0.576 6.576 16 N -0.600 5.600 17 C 0.060 3.940 18 C 0.260 3.740 19 C -0.543 4.543 20 H 0.056 0.944 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.969 3.031 24 H -0.279 1.279 25 H -0.278 1.278 26 H -0.257 1.257 27 C -0.113 4.113 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.185 0.815 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.080 0.920 41 H -0.004 1.004 42 H 0.033 0.967 43 H 0.268 0.732 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.224 6.945 -8.636 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.146 4.146 4 C -0.029 4.029 5 C -0.162 4.162 6 N -0.196 5.196 7 C -0.066 4.066 8 C 0.363 3.637 9 O -0.397 6.397 10 O -0.241 6.241 11 C 0.018 3.982 12 H 0.142 0.858 13 C -0.220 4.220 14 C 0.286 3.714 15 O -0.455 6.455 16 N -0.332 5.332 17 C -0.081 4.081 18 C 0.139 3.861 19 C -0.582 4.582 20 H 0.074 0.926 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.793 3.207 24 H -0.205 1.205 25 H -0.203 1.203 26 H -0.182 1.182 27 C -0.133 4.133 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.203 0.797 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.014 0.986 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -26.062 7.107 -8.359 28.277 hybrid contribution 0.674 -0.195 -0.014 0.701 sum -25.388 6.912 -8.372 27.612 Atomic orbital electron populations 1.20945 0.86180 1.05143 1.04559 1.20788 0.99195 0.91202 0.94069 1.22627 0.93561 1.00879 0.97535 1.21985 0.92870 0.93505 0.94566 1.20862 0.99977 0.91024 1.04315 1.67454 1.42520 0.98561 1.11026 1.19950 0.91267 0.89642 1.05737 1.21364 0.80975 0.89295 0.72041 1.90772 1.70897 1.31078 1.46975 1.86822 1.19993 1.34629 1.82630 1.22667 0.90627 0.84595 1.00329 0.85848 1.22309 1.04935 1.03307 0.91410 1.20623 0.86426 0.84613 0.79784 1.90682 1.70734 1.27524 1.56565 1.48065 1.24925 1.06688 1.53543 1.22314 1.01112 0.82597 1.02099 1.18857 0.80538 0.95962 0.90728 1.21642 0.92172 1.50984 0.93389 0.92618 1.25883 1.02009 0.94360 0.96962 1.70044 1.23231 1.50503 1.13051 0.85442 0.77631 0.79070 0.78519 1.20492 1.20256 1.18163 1.22158 0.91527 1.01657 0.97963 0.88653 0.90056 0.88530 0.79733 0.89005 0.87047 0.92243 0.88553 0.91817 0.87460 0.90826 0.88314 0.90164 0.98579 0.94885 0.92320 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.06 71.24 0.72 0.10 16 2 C -0.04 -0.62 5.91 -19.69 -0.12 -0.74 16 3 C -0.13 -1.71 9.45 22.44 0.21 -1.50 16 4 C 0.11 2.39 6.78 42.69 0.29 2.68 16 5 C -0.10 -1.67 10.17 71.23 0.72 -0.95 16 6 N -0.48 -14.92 10.03 -173.12 -1.74 -16.65 16 7 C 0.07 2.03 6.75 41.88 0.28 2.32 16 8 C 0.52 17.59 7.92 70.43 0.56 18.15 16 9 O -0.51 -16.57 15.58 20.07 0.31 -16.26 16 10 O -0.33 -12.93 9.27 -49.68 -0.46 -13.39 16 11 C 0.08 2.74 2.17 29.85 0.06 2.80 16 12 H 0.12 3.89 6.70 -2.38 -0.02 3.88 16 13 C -0.16 -4.62 9.15 71.98 0.66 -3.96 16 14 C 0.50 23.42 7.00 87.66 0.61 24.03 16 15 O -0.58 -33.69 16.18 15.35 0.25 -33.44 16 16 N -0.60 -27.06 2.86 -851.14 -2.43 -29.49 16 17 C 0.06 1.87 9.86 127.77 1.26 3.13 16 18 C 0.26 14.55 5.14 85.63 0.44 14.99 16 19 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 20 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 21 C 0.01 0.40 5.46 84.65 0.46 0.87 16 22 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 23 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 27 C -0.11 -2.33 9.34 22.62 0.21 -2.12 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.41 8.10 -2.39 -0.02 0.39 16 30 H 0.10 0.18 8.10 -2.38 -0.02 0.16 16 31 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 0.95 8.08 -2.38 -0.02 0.93 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.11 2.67 5.52 -2.38 -0.01 2.65 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.10 2.42 4.22 -2.38 -0.01 2.41 16 40 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 41 H 0.00 -0.25 7.48 -2.38 -0.02 -0.27 16 42 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.16 2.85 7.64 -2.91 -0.02 2.82 16 Total: -1.00 -86.53 377.63 5.87 -80.66 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.01 Total: 9.82 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 6.62 Total: 27.94 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.88 Total: -103.13 kcal Atomic # 8 Polarization: -63.19 SS G_CDS: 0.10 Total: -63.09 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -86.53 5.87 -80.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801446970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.125 kcal (2) G-P(sol) polarization free energy of solvation -86.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds