Wall clock time and date at job start Tue Mar 31 2020 13:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46952 * 120.00125 * 2 1 4 4 O 1.21535 * 120.00100 * 179.97438 * 3 2 1 5 5 O 1.34796 * 119.99798 * 359.97438 * 3 2 1 6 6 C 1.45206 * 116.99752 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47021 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00033 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00165 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47101 * 89.99740 * 10 9 7 12 12 H 1.08006 * 120.00021 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00066 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47095 * 90.00115 * 15 13 11 17 17 H 1.48494 * 109.47334 * 210.00562 * 15 13 11 18 18 H 1.48501 * 109.46981 * 330.00571 * 15 13 11 19 19 C 1.46499 * 119.99713 * 359.97438 * 9 7 6 20 20 C 1.53000 * 109.46877 * 90.00647 * 19 9 7 21 21 C 1.47202 * 109.47362 * 179.97438 * 20 19 9 22 22 N 8.47804 * 126.07627 * 347.84620 * 2 1 3 23 23 C 1.33083 * 119.99671 * 179.97438 * 2 1 3 24 24 C 1.51404 * 136.32029 * 359.62934 * 23 2 1 25 25 C 1.53372 * 87.51966 * 206.05732 * 24 23 2 26 26 C 1.51414 * 136.31445 * 180.02562 * 23 2 1 27 27 H 1.08998 * 109.47151 * 89.99914 * 1 2 3 28 28 H 1.09003 * 109.47173 * 210.00195 * 1 2 3 29 29 H 1.09005 * 109.46909 * 330.00188 * 1 2 3 30 30 H 1.09004 * 109.47122 * 299.99978 * 6 5 3 31 31 H 1.09000 * 109.47070 * 60.00004 * 6 5 3 32 32 H 1.08993 * 109.46833 * 209.99640 * 10 9 7 33 33 H 1.08999 * 109.46628 * 329.99824 * 10 9 7 34 34 H 0.97002 * 119.99773 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.47538 * 210.00030 * 19 9 7 36 36 H 1.08998 * 109.47333 * 330.00636 * 19 9 7 37 37 H 1.09009 * 109.47062 * 299.99624 * 20 19 9 38 38 H 1.09003 * 109.47589 * 59.99719 * 20 19 9 39 39 H 1.08997 * 113.56146 * 320.64079 * 24 23 2 40 40 H 1.09004 * 113.55665 * 91.37340 * 24 23 2 41 41 H 1.09012 * 113.96764 * 220.29295 * 25 24 23 42 42 H 1.08995 * 113.60232 * 88.79509 * 25 24 23 43 43 H 1.09002 * 113.55805 * 268.62677 * 26 23 2 44 44 H 1.08998 * 113.55979 * 39.35961 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2418 1.2726 0.0000 4 8 3.4571 1.2726 0.0005 5 8 1.5678 2.4400 -0.0005 6 6 2.3587 3.6578 -0.0011 7 6 1.4407 4.8529 -0.0010 8 8 0.2383 4.6940 0.0000 9 7 1.9558 6.0983 -0.0019 10 6 1.0635 7.2602 -0.0024 11 6 0.7579 7.6594 1.4183 12 1 1.1860 7.1036 2.2394 13 6 -0.0682 8.7343 1.6698 14 7 -0.3344 9.0830 2.9096 15 14 -0.8080 9.6961 0.2496 16 1 -2.1142 9.0978 -0.1263 17 1 -1.0105 11.1086 0.6606 18 1 0.1125 9.6465 -0.9146 19 6 3.4082 6.2902 -0.0025 20 6 3.9133 6.3562 -1.4452 21 6 5.3725 6.5496 -1.4460 22 7 6.4994 6.6987 -1.4426 23 6 2.1723 -1.1526 0.0005 24 6 1.8142 -2.6236 0.0079 25 6 3.1711 -2.8823 0.6744 26 6 3.6255 -1.5780 0.0012 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 2.9875 3.6830 0.8889 31 1 2.9875 3.6822 -0.8911 32 1 1.5478 8.0900 -0.5168 33 1 0.1362 7.0058 -0.5158 34 1 -0.9153 9.8395 3.0866 35 1 3.6521 7.2204 0.5106 36 1 3.8852 5.4558 0.5116 37 1 3.6695 5.4259 -1.9585 38 1 3.4363 7.1906 -1.9594 39 1 0.9641 -2.8619 0.6472 40 1 1.7288 -3.0562 -0.9889 41 1 3.6838 -3.7705 0.3049 42 1 3.1402 -2.8282 1.7626 43 1 4.0373 -1.7236 -0.9975 44 1 4.2604 -0.9589 0.6349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838229202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:56 Heat of formation + Delta-G solvation = -49.852401 kcal Electronic energy + Delta-G solvation = -26304.771707 eV Core-core repulsion = 22417.119741 eV Total energy + Delta-G solvation = -3887.651966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65337 -39.47142 -38.78353 -36.96396 -36.26130 -35.36071 -33.46654 -32.86130 -31.10153 -29.55549 -27.28981 -26.85245 -25.80978 -24.20484 -23.88109 -22.35792 -21.13636 -19.02007 -18.40696 -17.82429 -17.31807 -16.91194 -16.69065 -16.53315 -16.12431 -15.79113 -15.58207 -14.82022 -14.67165 -14.45409 -14.03261 -13.77799 -13.58299 -13.18487 -12.93703 -12.79846 -12.63805 -12.57276 -12.53374 -12.46375 -12.31210 -12.17037 -11.89177 -11.83434 -11.64410 -11.34659 -11.14273 -11.04274 -10.93021 -10.65725 -10.60917 -10.26528 -10.25158 -9.63996 -9.24773 -9.18565 -8.65664 -8.03515 -6.14990 -4.15403 0.91249 2.35300 2.65189 2.74653 2.79665 3.04264 3.24474 3.29574 3.32591 3.50078 3.98504 4.10139 4.20743 4.33189 4.37261 4.67194 4.73775 4.76132 4.87143 4.95024 5.02777 5.07749 5.15484 5.18782 5.24625 5.31003 5.36769 5.44606 5.51791 5.57055 5.66498 5.67651 5.77867 5.87842 5.94851 6.05706 6.26420 6.42147 6.51700 6.78983 7.06883 7.49764 7.51277 7.68945 7.91617 8.36549 8.66674 8.88405 9.43690 10.98164 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.003101 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.376548 B = 9027.567710 C =10656.821340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.136 4.136 3 C 0.505 3.495 4 O -0.512 6.512 5 O -0.323 6.323 6 C 0.048 3.952 7 C 0.512 3.488 8 O -0.507 6.507 9 N -0.588 5.588 10 C 0.216 3.784 11 C -0.534 4.534 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.894 5.894 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.112 3.888 20 C -0.051 4.051 21 C 0.215 3.785 22 N -0.439 5.439 23 C -0.068 4.068 24 C -0.102 4.102 25 C -0.142 4.142 26 C -0.107 4.107 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 -20.103 -8.719 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.351 3.649 4 O -0.402 6.402 5 O -0.238 6.238 6 C -0.030 4.030 7 C 0.297 3.703 8 O -0.381 6.381 9 N -0.321 5.321 10 C 0.097 3.903 11 C -0.573 4.573 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.532 5.532 15 Si 0.702 3.298 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.014 4.014 20 C -0.093 4.093 21 C -0.104 4.104 22 N -0.116 5.116 23 C -0.069 4.069 24 C -0.138 4.138 25 C -0.179 4.179 26 C -0.143 4.143 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.789 -19.777 -8.590 22.606 hybrid contribution -0.647 0.756 -0.517 1.121 sum 6.142 -19.021 -9.107 21.965 Atomic orbital electron populations 1.20668 0.89116 1.03641 1.02967 1.19685 0.96570 0.87840 1.09577 1.21264 0.86049 0.84682 0.72932 1.90830 1.14721 1.88236 1.46438 1.86650 1.39829 1.13619 1.83669 1.22922 0.93515 0.82079 1.04439 1.19752 0.88823 0.83503 0.78219 1.90739 1.14875 1.84993 1.47520 1.47802 1.05778 1.06196 1.72309 1.19783 0.89762 0.81998 0.98786 1.21292 1.30344 1.14507 0.91140 0.90574 1.24853 0.95591 0.96874 0.95575 1.69891 1.36826 1.27785 1.18724 0.86869 0.80558 0.79521 0.82830 1.19830 1.21082 1.18938 1.21428 0.81584 1.05040 0.93351 1.19884 0.82151 1.05919 1.01300 1.29016 0.94953 0.93051 0.93333 1.81249 1.12893 1.09156 1.08348 1.23364 0.98351 0.93867 0.91300 1.22241 0.98785 0.90730 1.02073 1.22731 0.96525 0.98101 1.00566 1.22311 0.93731 0.96210 1.02067 0.90841 0.91459 0.89968 0.88336 0.88667 0.94592 0.94035 0.92442 0.87956 0.90256 0.87554 0.86403 0.90074 0.87898 0.90247 0.89583 0.88229 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.80 36.00 0.35 -0.71 16 2 C -0.14 -1.56 6.00 -102.89 -0.62 -2.18 16 3 C 0.50 7.14 7.88 34.26 0.27 7.41 16 4 O -0.51 -7.77 14.94 -19.29 -0.29 -8.06 16 5 O -0.32 -5.04 9.02 -47.44 -0.43 -5.47 16 6 C 0.05 0.69 4.51 36.01 0.16 0.85 16 7 C 0.51 9.34 7.75 -10.99 -0.09 9.26 16 8 O -0.51 -11.60 16.08 -14.11 -0.23 -11.83 16 9 N -0.59 -10.25 2.46 -175.06 -0.43 -10.68 16 10 C 0.22 4.66 4.23 -5.19 -0.02 4.64 16 11 C -0.53 -14.27 9.94 -34.44 -0.34 -14.61 16 12 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 15 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 19 C 0.11 1.42 5.17 -4.04 -0.02 1.40 16 20 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 21 C 0.21 2.52 15.44 -20.74 -0.32 2.20 16 22 N -0.44 -6.41 18.54 42.18 0.78 -5.62 16 23 C -0.07 -0.65 6.60 -100.45 -0.66 -1.31 16 24 C -0.10 -0.64 7.69 -27.56 -0.21 -0.85 16 25 C -0.14 -0.89 8.17 -26.21 -0.21 -1.10 16 26 C -0.11 -0.92 7.01 -27.41 -0.19 -1.11 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.53 7.84 -51.93 -0.41 0.12 16 29 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 30 H 0.10 1.30 7.40 -51.93 -0.38 0.92 16 31 H 0.10 1.09 7.18 -51.93 -0.37 0.71 16 32 H 0.04 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 37 H 0.11 0.83 7.22 -51.92 -0.37 0.45 16 38 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.90 7.48 -51.93 -0.39 0.51 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -35.14 381.46 -7.27 -42.40 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.35 Total: -1.46 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -2.18 Total: 5.16 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 1.13 Total: -42.13 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.94 Total: -25.36 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.14 -7.27 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838229202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.448 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds