Wall clock time and date at job start Tue Mar 31 2020 13:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46952 * 120.00125 * 2 1 4 4 O 1.21535 * 120.00100 * 179.97438 * 3 2 1 5 5 O 1.34796 * 119.99798 * 359.97438 * 3 2 1 6 6 C 1.45206 * 116.99752 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47021 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00033 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00165 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47101 * 89.99740 * 10 9 7 12 12 H 1.08006 * 120.00021 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00066 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47095 * 90.00115 * 15 13 11 17 17 H 1.48494 * 109.47334 * 210.00562 * 15 13 11 18 18 H 1.48501 * 109.46981 * 330.00571 * 15 13 11 19 19 C 1.46499 * 119.99713 * 359.97438 * 9 7 6 20 20 C 1.53000 * 109.46877 * 90.00647 * 19 9 7 21 21 C 1.47202 * 109.47362 * 179.97438 * 20 19 9 22 22 N 8.47804 * 126.07627 * 347.84620 * 2 1 3 23 23 C 1.33083 * 119.99671 * 179.97438 * 2 1 3 24 24 C 1.51404 * 136.32029 * 359.62934 * 23 2 1 25 25 C 1.53372 * 87.51966 * 206.05732 * 24 23 2 26 26 C 1.51414 * 136.31445 * 180.02562 * 23 2 1 27 27 H 1.08998 * 109.47151 * 89.99914 * 1 2 3 28 28 H 1.09003 * 109.47173 * 210.00195 * 1 2 3 29 29 H 1.09005 * 109.46909 * 330.00188 * 1 2 3 30 30 H 1.09004 * 109.47122 * 299.99978 * 6 5 3 31 31 H 1.09000 * 109.47070 * 60.00004 * 6 5 3 32 32 H 1.08993 * 109.46833 * 209.99640 * 10 9 7 33 33 H 1.08999 * 109.46628 * 329.99824 * 10 9 7 34 34 H 0.97002 * 119.99773 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.47538 * 210.00030 * 19 9 7 36 36 H 1.08998 * 109.47333 * 330.00636 * 19 9 7 37 37 H 1.09009 * 109.47062 * 299.99624 * 20 19 9 38 38 H 1.09003 * 109.47589 * 59.99719 * 20 19 9 39 39 H 1.08997 * 113.56146 * 320.64079 * 24 23 2 40 40 H 1.09004 * 113.55665 * 91.37340 * 24 23 2 41 41 H 1.09012 * 113.96764 * 220.29295 * 25 24 23 42 42 H 1.08995 * 113.60232 * 88.79509 * 25 24 23 43 43 H 1.09002 * 113.55805 * 268.62677 * 26 23 2 44 44 H 1.08998 * 113.55979 * 39.35961 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2418 1.2726 0.0000 4 8 3.4571 1.2726 0.0005 5 8 1.5678 2.4400 -0.0005 6 6 2.3587 3.6578 -0.0011 7 6 1.4407 4.8529 -0.0010 8 8 0.2383 4.6940 0.0000 9 7 1.9558 6.0983 -0.0019 10 6 1.0635 7.2602 -0.0024 11 6 0.7579 7.6594 1.4183 12 1 1.1860 7.1036 2.2394 13 6 -0.0682 8.7343 1.6698 14 7 -0.3344 9.0830 2.9096 15 14 -0.8080 9.6961 0.2496 16 1 -2.1142 9.0978 -0.1263 17 1 -1.0105 11.1086 0.6606 18 1 0.1125 9.6465 -0.9146 19 6 3.4082 6.2902 -0.0025 20 6 3.9133 6.3562 -1.4452 21 6 5.3725 6.5496 -1.4460 22 7 6.4994 6.6987 -1.4426 23 6 2.1723 -1.1526 0.0005 24 6 1.8142 -2.6236 0.0079 25 6 3.1711 -2.8823 0.6744 26 6 3.6255 -1.5780 0.0012 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 2.9875 3.6830 0.8889 31 1 2.9875 3.6822 -0.8911 32 1 1.5478 8.0900 -0.5168 33 1 0.1362 7.0058 -0.5158 34 1 -0.9153 9.8395 3.0866 35 1 3.6521 7.2204 0.5106 36 1 3.8852 5.4558 0.5116 37 1 3.6695 5.4259 -1.9585 38 1 3.4363 7.1906 -1.9594 39 1 0.9641 -2.8619 0.6472 40 1 1.7288 -3.0562 -0.9889 41 1 3.6838 -3.7705 0.3049 42 1 3.1402 -2.8282 1.7626 43 1 4.0373 -1.7236 -0.9975 44 1 4.2604 -0.9589 0.6349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838229202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:56 Heat of formation + Delta-G solvation = -70.543697 kcal Electronic energy + Delta-G solvation = -26305.668949 eV Core-core repulsion = 22417.119741 eV Total energy + Delta-G solvation = -3888.549208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75109 -40.73119 -39.60543 -38.06602 -37.39019 -36.74009 -34.83407 -34.23748 -32.42815 -30.96672 -28.83764 -27.56777 -26.42310 -25.32684 -25.01664 -23.89969 -21.97001 -20.34230 -19.41990 -19.18752 -18.55890 -18.38281 -17.81157 -17.64491 -17.29405 -16.81572 -16.43023 -16.17433 -15.82477 -15.73682 -15.20453 -14.90794 -14.73847 -14.44861 -14.13062 -13.94130 -13.76157 -13.75137 -13.61147 -13.33391 -13.32372 -13.21980 -13.04422 -12.93441 -12.71745 -12.46729 -12.39667 -12.10057 -12.00909 -11.96554 -11.75362 -11.68695 -11.66352 -11.07409 -10.77729 -10.75456 -9.94884 -9.57993 -8.27506 -6.33063 0.04942 1.24075 1.41103 1.44939 1.52120 1.54009 1.76070 1.82349 1.83658 2.30307 2.37639 3.01432 3.10005 3.35470 3.49639 3.52570 3.76259 3.82942 3.93685 3.96650 4.06279 4.10572 4.23888 4.37917 4.51733 4.70438 4.74287 4.76670 4.81822 4.84046 4.85450 4.91679 4.96028 5.04539 5.05457 5.07042 5.23621 5.33518 5.38057 5.49691 5.54848 5.64275 6.26725 6.46380 6.59565 6.65863 6.70462 7.18588 7.33610 8.89454 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.003101 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.376548 B = 9027.567710 C =10656.821340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.169 4.169 3 C 0.501 3.499 4 O -0.530 6.530 5 O -0.343 6.343 6 C 0.053 3.947 7 C 0.509 3.491 8 O -0.563 6.563 9 N -0.586 5.586 10 C 0.223 3.777 11 C -0.537 4.537 12 H 0.029 0.971 13 C 0.008 3.992 14 N -0.950 5.950 15 Si 0.945 3.055 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.223 1.223 19 C 0.106 3.894 20 C -0.038 4.038 21 C 0.244 3.756 22 N -0.489 5.489 23 C -0.059 4.059 24 C -0.093 4.093 25 C -0.132 4.132 26 C -0.117 4.117 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -21.819 -11.342 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.170 4.170 3 C 0.349 3.651 4 O -0.422 6.422 5 O -0.259 6.259 6 C -0.023 4.023 7 C 0.296 3.704 8 O -0.441 6.441 9 N -0.318 5.318 10 C 0.101 3.899 11 C -0.575 4.575 12 H 0.047 0.953 13 C -0.189 4.189 14 N -0.590 5.590 15 Si 0.768 3.232 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.146 1.146 19 C -0.019 4.019 20 C -0.079 4.079 21 C -0.074 4.074 22 N -0.167 5.167 23 C -0.060 4.060 24 C -0.129 4.129 25 C -0.170 4.170 26 C -0.154 4.154 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.130 0.870 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.573 -21.507 -11.231 25.417 hybrid contribution -0.796 1.165 0.417 1.472 sum 6.777 -20.342 -10.814 24.013 Atomic orbital electron populations 1.20608 0.88379 1.03354 1.03322 1.19761 0.97189 0.87222 1.12846 1.21796 0.86114 0.84887 0.72279 1.90805 1.15282 1.88354 1.47730 1.86655 1.40800 1.14363 1.84034 1.22914 0.92445 0.80358 1.06621 1.20407 0.88620 0.84579 0.76752 1.90709 1.17412 1.85887 1.50131 1.47727 1.07357 1.05074 1.71642 1.19517 0.90741 0.84288 0.95328 1.21609 1.29532 1.13638 0.92758 0.95291 1.25875 0.96196 0.98341 0.98508 1.70067 1.38395 1.28933 1.21606 0.85758 0.79895 0.77302 0.80273 1.20352 1.21026 1.14570 1.21647 0.78778 1.05587 0.95857 1.19870 0.80538 1.08282 0.99231 1.29190 0.94931 0.91433 0.91826 1.81294 1.14512 1.11056 1.09868 1.23906 0.99343 0.95029 0.87699 1.22378 0.99265 0.87682 1.03560 1.22723 0.96341 0.97506 1.00391 1.22481 0.92880 0.97350 1.02647 0.90226 0.89286 0.92616 0.87268 0.85070 0.91300 0.95215 0.92481 0.88732 0.88426 0.84706 0.84518 0.88763 0.85613 0.88011 0.89766 0.87048 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.80 71.24 0.70 -1.25 16 2 C -0.17 -3.79 6.00 -18.74 -0.11 -3.91 16 3 C 0.50 14.14 7.88 70.10 0.55 14.69 16 4 O -0.53 -15.84 14.94 19.72 0.29 -15.55 16 5 O -0.34 -10.80 9.02 -50.68 -0.46 -11.25 16 6 C 0.05 1.48 4.51 71.24 0.32 1.80 16 7 C 0.51 18.49 7.75 87.66 0.68 19.17 16 8 O -0.56 -26.46 16.08 15.76 0.25 -26.21 16 9 N -0.59 -19.82 2.46 -826.16 -2.03 -21.85 16 10 C 0.22 9.36 4.23 85.63 0.36 9.72 16 11 C -0.54 -29.37 9.94 25.60 0.25 -29.11 16 12 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 13 C 0.01 0.47 5.47 84.65 0.46 0.94 16 14 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 15 Si 0.95 41.54 27.47 68.60 1.88 43.42 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.22 -8.26 6.54 99.48 0.65 -7.61 16 19 C 0.11 2.46 5.17 86.38 0.45 2.90 16 20 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 21 C 0.24 5.09 15.44 89.44 1.38 6.47 16 22 N -0.49 -13.51 18.54 20.01 0.37 -13.13 16 23 C -0.06 -1.03 6.60 -17.16 -0.11 -1.14 16 24 C -0.09 -0.86 7.69 30.06 0.23 -0.63 16 25 C -0.13 -1.26 8.17 30.93 0.25 -1.01 16 26 C -0.12 -1.81 7.01 30.15 0.21 -1.60 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 1.27 7.84 -2.39 -0.02 1.25 16 29 H 0.05 1.36 7.68 -2.38 -0.02 1.35 16 30 H 0.11 2.79 7.40 -2.38 -0.02 2.77 16 31 H 0.13 2.64 7.18 -2.39 -0.02 2.62 16 32 H 0.07 2.48 7.13 -2.39 -0.02 2.46 16 33 H 0.03 1.35 6.85 -2.39 -0.02 1.33 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 36 H 0.10 1.93 6.44 -2.39 -0.02 1.91 16 37 H 0.14 1.47 7.22 -2.38 -0.02 1.46 16 38 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 0.70 8.07 -2.39 -0.02 0.68 16 40 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 1.31 7.48 -2.39 -0.02 1.30 16 Total: -1.00 -82.11 381.46 7.38 -74.73 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.96 Total: 11.56 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 5.80 Total: 16.62 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -1.36 Total: -93.32 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: 0.09 Total: -53.01 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -82.11 7.38 -74.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838229202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.184 kcal (2) G-P(sol) polarization free energy of solvation -82.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds