Wall clock time and date at job start Tue Mar 31 2020 12:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.87702 * 2 1 4 4 O 1.42905 * 109.46664 * 63.98413 * 3 2 1 5 5 C 1.54324 * 109.88163 * 238.98495 * 2 1 3 6 6 C 1.55159 * 102.94338 * 262.62246 * 5 2 1 7 7 H 1.08997 * 111.00230 * 82.57009 * 6 5 2 8 8 O 1.42898 * 111.00486 * 206.42306 * 6 5 2 9 9 C 1.54915 * 101.58056 * 324.49914 * 6 5 2 10 10 N 1.47024 * 110.01059 * 121.10215 * 2 1 3 11 11 C 1.34780 * 125.64869 * 300.52025 * 10 2 1 12 12 O 1.21579 * 119.99858 * 0.02562 * 11 10 2 13 13 N 1.34769 * 120.00206 * 180.02562 * 11 10 2 14 14 C 1.39242 * 120.00338 * 175.71678 * 13 11 10 15 15 C 1.39480 * 119.83571 * 215.02141 * 14 13 11 16 16 C 1.36367 * 120.17005 * 179.75649 * 15 14 13 17 17 C 1.40877 * 119.82788 * 0.51627 * 16 15 14 18 18 C 1.41152 * 120.16338 * 179.76229 * 17 16 15 19 19 H 1.08003 * 119.99642 * 214.76117 * 18 17 16 20 20 C 1.39887 * 119.99922 * 34.76446 * 18 17 16 21 21 N 1.30874 * 120.00510 * 355.55821 * 20 18 17 22 22 Si 1.86813 * 119.99705 * 175.55982 * 20 18 17 23 23 H 1.48496 * 109.46909 * 59.99573 * 22 20 18 24 24 H 1.48497 * 109.46799 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46663 * 299.99686 * 22 20 18 26 26 C 1.40874 * 119.66920 * 359.73910 * 17 16 15 27 27 C 1.36366 * 119.82958 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.47452 * 60.69529 * 1 2 3 29 29 H 1.08997 * 109.47380 * 180.70081 * 1 2 3 30 30 H 1.09005 * 109.47063 * 300.69666 * 1 2 3 31 31 H 1.09001 * 109.46830 * 303.98944 * 3 2 1 32 32 H 1.08994 * 109.46691 * 183.98162 * 3 2 1 33 33 H 0.96698 * 113.99306 * 179.97438 * 4 3 2 34 34 H 1.09000 * 110.72024 * 20.98294 * 5 2 1 35 35 H 1.08998 * 110.72413 * 144.26115 * 5 2 1 36 36 H 0.96703 * 114.00095 * 179.97438 * 8 6 5 37 37 H 1.09001 * 110.36739 * 155.84867 * 9 6 5 38 38 H 1.08999 * 110.36373 * 278.16670 * 9 6 5 39 39 H 0.97008 * 120.00250 * 355.71198 * 13 11 10 40 40 H 1.08003 * 119.91595 * 0.02562 * 15 14 13 41 41 H 1.07998 * 120.09006 * 180.25549 * 16 15 14 42 42 H 0.97003 * 120.00211 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.08113 * 179.97438 * 26 17 16 44 44 H 1.08003 * 119.91891 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4389 0.0000 4 8 1.6563 2.0877 1.2108 5 6 2.0548 -0.7478 -1.2438 6 6 2.3556 -2.1674 -0.6946 7 1 1.4502 -2.7735 -0.6617 8 8 3.3721 -2.8103 -1.4661 9 6 2.8617 -1.8473 0.7342 10 7 2.0331 -0.7136 1.1829 11 6 1.7792 -0.3854 2.4652 12 8 1.0788 0.5753 2.7196 13 7 2.3019 -1.1219 3.4655 14 6 2.1140 -0.7319 4.7889 15 6 3.1245 -0.9473 5.7260 16 6 2.9497 -0.5636 7.0228 17 6 1.7405 0.0420 7.4175 18 6 1.5501 0.4374 8.7591 19 1 0.5711 0.3657 9.2094 20 6 2.6295 0.9221 9.5052 21 7 3.8320 0.9279 8.9889 22 14 2.3543 1.5613 11.2389 23 1 1.7929 0.4764 12.0831 24 1 3.6479 2.0138 11.8107 25 1 1.4035 2.7014 11.2010 26 6 0.7225 0.2513 6.4665 27 6 0.9142 -0.1325 5.1720 28 1 -0.3634 0.5030 -0.8961 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 1.6334 1.9759 -0.8521 32 1 3.1378 1.4319 -0.0714 33 1 1.9529 3.0055 1.2796 34 1 1.2908 -0.7886 -2.0201 35 1 2.9641 -0.2794 -1.6203 36 1 3.5944 -3.7003 -1.1601 37 1 2.7164 -2.7062 1.3894 38 1 3.9134 -1.5620 0.7089 39 1 2.8089 -1.9239 3.2636 40 1 4.0494 -1.4153 5.4227 41 1 3.7346 -0.7273 7.7464 42 1 4.5805 1.2637 9.5065 43 1 -0.2072 0.7146 6.7618 44 1 0.1346 0.0270 4.4418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929429633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:36 Heat of formation + Delta-G solvation = -109.881635 kcal Electronic energy + Delta-G solvation = -27589.678344 eV Core-core repulsion = 23699.423314 eV Total energy + Delta-G solvation = -3890.255029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79013 -40.12166 -38.66160 -37.69310 -36.32038 -35.95077 -34.71346 -32.96036 -31.41465 -31.04255 -30.34248 -27.62190 -26.85345 -26.16425 -23.79094 -23.01575 -22.59442 -21.58372 -20.12990 -19.22934 -18.72106 -18.53159 -18.03586 -17.77732 -17.00164 -16.72053 -16.46641 -15.79829 -15.52835 -15.38248 -14.85088 -14.78361 -14.70496 -14.40792 -14.33790 -14.09144 -13.90774 -13.53339 -13.41092 -13.21589 -12.92462 -12.90097 -12.79426 -12.70786 -12.43380 -12.18125 -12.08941 -11.79060 -11.65128 -11.35647 -11.15123 -11.10046 -10.77716 -10.69644 -10.44901 -9.55100 -9.42075 -8.62783 -8.46454 -6.28909 0.89710 1.18017 1.39885 1.49690 1.52455 1.64578 2.25701 2.39943 2.84060 2.92415 3.20239 3.48698 3.57882 3.70805 3.72578 3.92945 4.11587 4.17552 4.38931 4.40705 4.49097 4.54639 4.58975 4.61634 4.70683 4.84888 4.86919 4.91857 4.96151 5.08347 5.15644 5.19652 5.29462 5.40390 5.49574 5.59476 5.72735 5.90451 6.08969 6.19398 6.28353 6.44409 6.71783 6.86082 6.98627 7.00261 7.05571 7.17293 7.86401 8.45918 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.002939 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.367766 B = 9524.826145 C =10015.466065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.179 3.821 3 C 0.062 3.938 4 O -0.554 6.554 5 C -0.107 4.107 6 C 0.107 3.893 7 H 0.090 0.910 8 O -0.564 6.564 9 C 0.061 3.939 10 N -0.624 5.624 11 C 0.704 3.296 12 O -0.565 6.565 13 N -0.668 5.668 14 C 0.050 3.950 15 C -0.125 4.125 16 C -0.155 4.155 17 C 0.065 3.935 18 C -0.501 4.501 19 H 0.071 0.929 20 C 0.028 3.972 21 N -0.844 5.844 22 Si 0.988 3.012 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.266 1.266 26 C -0.218 4.218 27 C -0.095 4.095 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.370 0.630 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.401 0.599 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.405 0.595 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.283 0.717 43 H 0.093 0.907 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 -6.623 -21.202 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.094 3.906 3 C -0.017 4.017 4 O -0.359 6.359 5 C -0.145 4.145 6 C 0.047 3.953 7 H 0.108 0.892 8 O -0.372 6.372 9 C -0.062 4.062 10 N -0.365 5.365 11 C 0.407 3.593 12 O -0.440 6.440 13 N -0.317 5.317 14 C -0.044 4.044 15 C -0.146 4.146 16 C -0.175 4.175 17 C 0.063 3.937 18 C -0.532 4.532 19 H 0.089 0.911 20 C -0.184 4.184 21 N -0.472 5.472 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.191 1.191 26 C -0.238 4.238 27 C -0.116 4.116 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.217 0.783 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.241 0.759 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.395 -5.867 -21.148 21.950 hybrid contribution 0.540 0.252 1.146 1.292 sum 0.935 -5.615 -20.001 20.796 Atomic orbital electron populations 1.22067 0.93937 1.02056 1.02698 1.21063 0.94761 0.90824 0.83997 1.22706 0.97647 0.93148 0.88163 1.87152 1.79820 1.29615 1.39266 1.22658 1.03311 0.93464 0.95038 1.22735 0.90935 0.93969 0.87667 0.89238 1.86480 1.58258 1.35727 1.56762 1.23193 0.95708 0.89444 0.97886 1.47456 1.53997 1.32301 1.02731 1.15659 0.81310 0.82306 0.80060 1.90938 1.41913 1.29524 1.81604 1.42010 1.58206 1.28493 1.02947 1.17083 0.94779 1.09510 0.83040 1.20499 0.96827 1.03626 0.93598 1.21128 0.99602 1.01349 0.95467 1.17988 0.92241 0.89842 0.93642 1.19673 0.96370 1.40178 0.96973 0.91057 1.26714 0.93902 0.94032 1.03730 1.69830 1.00698 1.37600 1.39091 0.85171 0.78513 0.79190 0.76254 1.18226 1.19241 1.19082 1.20912 1.00813 1.08683 0.93348 1.20473 0.96023 1.00051 0.95022 0.89742 0.92201 0.93926 0.91029 0.94156 0.78317 0.86897 0.89064 0.74764 0.89485 0.90892 0.75888 0.86259 0.86388 0.90597 0.88838 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.26 71.98 0.59 -2.86 16 2 C 0.18 3.91 0.79 3.95 0.00 3.92 16 3 C 0.06 1.44 6.02 71.98 0.43 1.87 16 4 O -0.55 -17.83 9.34 -125.39 -1.17 -19.00 16 5 C -0.11 -1.50 5.76 31.78 0.18 -1.31 16 6 C 0.11 1.36 4.43 31.99 0.14 1.50 16 7 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 8 O -0.56 -6.30 13.47 -148.98 -2.01 -8.31 16 9 C 0.06 1.06 6.35 86.86 0.55 1.61 16 10 N -0.62 -16.45 2.82 -782.96 -2.21 -18.66 16 11 C 0.70 26.07 7.71 179.06 1.38 27.46 16 12 O -0.56 -25.60 9.44 19.63 0.19 -25.42 16 13 N -0.67 -24.41 5.26 -316.79 -1.67 -26.07 16 14 C 0.05 2.31 6.31 38.57 0.24 2.55 16 15 C -0.12 -5.87 9.90 22.13 0.22 -5.66 16 16 C -0.16 -8.40 8.61 22.48 0.19 -8.21 16 17 C 0.07 3.73 5.55 -21.27 -0.12 3.61 16 18 C -0.50 -28.43 9.02 23.39 0.21 -28.22 16 19 H 0.07 3.91 7.85 -2.91 -0.02 3.88 16 20 C 0.03 1.46 5.42 85.23 0.46 1.92 16 21 N -0.84 -45.85 10.59 21.82 0.23 -45.61 16 22 Si 0.99 40.29 29.56 68.60 2.03 42.32 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 26 C -0.22 -11.84 9.74 22.48 0.22 -11.62 16 27 C -0.10 -4.85 8.61 22.13 0.19 -4.66 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.39 6.44 -2.38 -0.02 1.37 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.90 8.07 -2.39 -0.02 0.88 16 33 H 0.37 9.38 9.12 -74.06 -0.68 8.70 16 34 H 0.11 1.13 7.83 -2.39 -0.02 1.11 16 35 H 0.09 1.26 7.80 -2.39 -0.02 1.24 16 36 H 0.40 1.11 9.12 -74.06 -0.68 0.44 16 37 H 0.09 1.26 7.23 -2.39 -0.02 1.25 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.40 11.59 7.27 -92.70 -0.67 10.91 16 40 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 41 H 0.12 6.62 6.13 -2.91 -0.02 6.60 16 42 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 43 H 0.09 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.11 5.41 6.22 -2.91 -0.02 5.39 16 Total: -1.00 -76.41 352.49 -0.67 -77.08 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.97 Total: 41.78 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.91 Total: -18.10 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -3.65 Total: -90.35 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -2.99 Total: -52.73 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -76.41 -0.67 -77.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929429633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.800 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds