Wall clock time and date at job start Tue Mar 31 2020 12:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.87022 * 2 1 4 4 O 1.42901 * 109.47130 * 301.01977 * 3 2 1 5 5 C 1.54319 * 109.88607 * 121.01957 * 2 1 3 6 6 C 1.55155 * 102.94367 * 97.38088 * 5 2 1 7 7 H 1.08997 * 111.00138 * 277.42686 * 6 5 2 8 8 O 1.42906 * 111.00511 * 153.57298 * 6 5 2 9 9 C 1.54911 * 101.58299 * 35.50279 * 6 5 2 10 10 N 1.47029 * 110.01127 * 238.90699 * 2 1 3 11 11 C 1.34777 * 125.64535 * 59.42390 * 10 2 1 12 12 O 1.21581 * 120.00437 * 359.97438 * 11 10 2 13 13 N 1.34777 * 119.99601 * 180.02562 * 11 10 2 14 14 C 1.39247 * 119.99998 * 174.85336 * 13 11 10 15 15 C 1.39482 * 119.82965 * 325.31238 * 14 13 11 16 16 C 1.36374 * 120.16319 * 179.76010 * 15 14 13 17 17 C 1.40864 * 119.83028 * 0.51635 * 16 15 14 18 18 C 1.41163 * 120.16449 * 179.75938 * 17 16 15 19 19 H 1.07998 * 119.99637 * 205.34118 * 18 17 16 20 20 C 1.39885 * 119.99592 * 25.34158 * 18 17 16 21 21 N 1.30878 * 120.00486 * 16.83090 * 20 18 17 22 22 Si 1.86803 * 119.99719 * 196.83057 * 20 18 17 23 23 H 1.48497 * 109.47367 * 60.00228 * 22 20 18 24 24 H 1.48508 * 109.47091 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46938 * 300.00100 * 22 20 18 26 26 C 1.40869 * 119.67535 * 359.73993 * 17 16 15 27 27 C 1.36374 * 119.82495 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47550 * 59.29723 * 1 2 3 29 29 H 1.09003 * 109.46766 * 179.29828 * 1 2 3 30 30 H 1.09000 * 109.47048 * 299.29226 * 1 2 3 31 31 H 1.08992 * 109.47301 * 61.01941 * 3 2 1 32 32 H 1.09004 * 109.46851 * 181.01949 * 3 2 1 33 33 H 0.96702 * 113.99880 * 180.02562 * 4 3 2 34 34 H 1.09004 * 110.71695 * 215.74416 * 5 2 1 35 35 H 1.08997 * 110.71938 * 338.83361 * 5 2 1 36 36 H 0.96700 * 113.99632 * 179.97438 * 8 6 5 37 37 H 1.08999 * 110.36894 * 81.82751 * 9 6 5 38 38 H 1.09002 * 110.36615 * 204.04470 * 9 6 5 39 39 H 0.96997 * 120.00251 * 354.84709 * 13 11 10 40 40 H 1.08000 * 119.91598 * 0.02562 * 15 14 13 41 41 H 1.08003 * 120.08321 * 180.25199 * 16 15 14 42 42 H 0.97009 * 120.00403 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.08968 * 180.02562 * 26 17 16 44 44 H 1.07999 * 119.91476 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 8 1.5590 2.1229 -1.1546 5 6 2.0549 -0.7478 1.2436 6 6 2.3558 -2.1673 0.6943 7 1 1.4505 -2.7735 0.6614 8 8 3.3726 -2.8102 1.4657 9 6 2.8619 -1.8472 -0.7344 10 7 2.0331 -0.7135 -1.1830 11 6 1.7784 -0.3856 -2.4653 12 8 1.0771 0.5745 -2.7195 13 7 2.3004 -1.1226 -3.4657 14 6 1.9519 -0.8503 -4.7861 15 6 0.6618 -0.4138 -5.0872 16 6 0.3146 -0.1405 -6.3774 17 6 1.2594 -0.3106 -7.4083 18 6 0.9061 -0.0346 -8.7469 19 1 1.4304 -0.5224 -9.5553 20 6 -0.1232 0.8706 -9.0261 21 7 -0.5343 1.7000 -8.1009 22 14 -0.9110 0.8957 -10.7197 23 1 -1.5131 -0.4314 -11.0053 24 1 -1.9680 1.9381 -10.7586 25 1 0.1222 1.2008 -11.7418 26 6 2.5587 -0.7569 -7.0969 27 6 2.8927 -1.0216 -5.8015 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8963 31 1 1.7053 1.9499 0.8989 32 1 3.1399 1.4313 -0.0183 33 1 1.8499 3.0428 -1.2202 34 1 2.9642 -0.2792 1.6201 35 1 1.2921 -0.7859 2.0212 36 1 3.5943 -3.7005 1.1601 37 1 3.9135 -1.5617 -0.7092 38 1 2.7183 -2.7067 -1.3892 39 1 2.9189 -1.8426 -3.2660 40 1 -0.0626 -0.2879 -4.2962 41 1 -0.6835 0.2013 -6.6087 42 1 -1.2483 2.3275 -8.2944 43 1 3.2885 -0.8892 -7.8820 44 1 3.8885 -1.3634 -5.5610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929429634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:39 Heat of formation + Delta-G solvation = -112.480114 kcal Electronic energy + Delta-G solvation = -27642.028986 eV Core-core repulsion = 23751.661278 eV Total energy + Delta-G solvation = -3890.367708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77934 -40.10275 -38.66061 -37.70353 -36.32521 -35.99896 -34.72672 -32.96189 -31.40038 -31.00242 -30.42815 -27.65478 -26.85569 -26.15841 -23.73489 -23.09485 -22.62932 -21.54064 -20.12179 -19.20493 -18.77150 -18.51265 -18.04907 -17.76203 -17.12535 -16.67699 -16.36452 -15.76795 -15.63882 -15.38817 -14.84224 -14.80078 -14.69229 -14.41186 -14.32287 -14.06322 -13.89938 -13.62284 -13.43332 -13.29419 -12.93581 -12.87473 -12.75955 -12.66182 -12.28898 -12.16742 -12.08589 -11.77550 -11.66682 -11.60818 -11.17018 -11.10258 -10.78638 -10.69085 -10.39009 -9.55963 -9.41347 -8.77493 -8.55829 -6.22647 0.91757 1.16914 1.38458 1.49422 1.52583 1.66124 2.22506 2.38209 2.81732 2.93073 3.21197 3.48893 3.57408 3.71236 3.77934 3.93521 4.11943 4.16624 4.38088 4.44496 4.48744 4.49811 4.54895 4.61424 4.69427 4.84134 4.86526 4.91569 4.99995 5.08434 5.10820 5.19182 5.31220 5.36746 5.48114 5.60405 5.70700 5.87722 6.11588 6.17567 6.27946 6.40051 6.72119 6.86193 6.96495 6.99104 7.06214 7.18778 7.88377 8.37940 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023700 B = 0.003078 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.149796 B = 9095.045793 C = 9778.229014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.179 3.821 3 C 0.064 3.936 4 O -0.557 6.557 5 C -0.106 4.106 6 C 0.107 3.893 7 H 0.087 0.913 8 O -0.563 6.563 9 C 0.062 3.938 10 N -0.625 5.625 11 C 0.701 3.299 12 O -0.569 6.569 13 N -0.666 5.666 14 C 0.038 3.962 15 C -0.097 4.097 16 C -0.176 4.176 17 C 0.071 3.929 18 C -0.498 4.498 19 H 0.081 0.919 20 C 0.029 3.971 21 N -0.832 5.832 22 Si 0.985 3.015 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.220 4.220 27 C -0.106 4.106 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.372 0.628 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.405 0.595 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.285 0.715 43 H 0.110 0.890 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -7.464 19.663 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.094 3.906 3 C -0.015 4.015 4 O -0.361 6.361 5 C -0.144 4.144 6 C 0.047 3.953 7 H 0.105 0.895 8 O -0.371 6.371 9 C -0.062 4.062 10 N -0.366 5.366 11 C 0.403 3.597 12 O -0.444 6.444 13 N -0.315 5.315 14 C -0.057 4.057 15 C -0.118 4.118 16 C -0.196 4.196 17 C 0.069 3.931 18 C -0.527 4.527 19 H 0.099 0.901 20 C -0.185 4.185 21 N -0.458 5.458 22 Si 0.805 3.195 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.240 4.240 27 C -0.126 4.126 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.218 0.782 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.252 0.748 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.242 0.758 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.353 -6.574 19.713 21.459 hybrid contribution 0.069 0.195 -1.045 1.066 sum 5.422 -6.379 18.668 20.459 Atomic orbital electron populations 1.22050 0.94323 1.01819 1.02580 1.21050 0.94554 0.90957 0.84085 1.22682 0.96932 0.92674 0.89207 1.87112 1.75710 1.28549 1.44771 1.22635 1.03361 0.93464 0.94901 1.22710 0.90900 0.93919 0.87791 0.89540 1.86479 1.58157 1.35683 1.56790 1.23192 0.95784 0.89423 0.97768 1.47476 1.54160 1.32276 1.02686 1.15719 0.81424 0.82358 0.80173 1.90999 1.42388 1.29184 1.81785 1.41981 1.49939 1.36404 1.03176 1.17006 0.93560 1.12349 0.82742 1.20400 0.95068 1.00871 0.95463 1.20856 0.99606 1.06642 0.92464 1.17962 0.91270 0.90010 0.93865 1.19773 1.16874 1.22943 0.93154 0.90060 1.26848 0.95661 0.92720 1.03227 1.69957 1.23864 1.14786 1.37208 0.85217 0.78316 0.79045 0.76873 1.18297 1.19646 1.18021 1.20795 0.95947 1.11435 0.95843 1.20343 0.97407 1.02777 0.92101 0.94172 0.92428 0.89817 0.90935 0.94003 0.78157 0.88805 0.87055 0.74758 0.90439 0.89545 0.75821 0.89454 0.88729 0.90432 0.87216 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.22 71.98 0.59 -3.21 16 2 C 0.18 4.11 0.79 3.95 0.00 4.11 16 3 C 0.06 1.52 5.98 71.98 0.43 1.95 16 4 O -0.56 -18.50 9.42 -125.63 -1.18 -19.68 16 5 C -0.11 -1.54 5.76 31.78 0.18 -1.36 16 6 C 0.11 1.41 4.43 31.99 0.14 1.55 16 7 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 8 O -0.56 -6.28 13.47 -148.98 -2.01 -8.29 16 9 C 0.06 1.07 6.27 86.86 0.54 1.62 16 10 N -0.63 -16.99 2.82 -782.94 -2.21 -19.20 16 11 C 0.70 26.86 7.68 179.05 1.37 28.23 16 12 O -0.57 -27.34 9.85 19.37 0.19 -27.15 16 13 N -0.67 -24.56 5.26 -316.78 -1.66 -26.22 16 14 C 0.04 1.74 6.27 38.56 0.24 1.98 16 15 C -0.10 -5.25 8.57 22.13 0.19 -5.06 16 16 C -0.18 -10.22 8.63 22.48 0.19 -10.02 16 17 C 0.07 4.07 5.57 -21.27 -0.12 3.95 16 18 C -0.50 -27.91 9.04 23.39 0.21 -27.70 16 19 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 20 C 0.03 1.56 5.15 85.23 0.44 2.00 16 21 N -0.83 -47.20 10.94 21.82 0.24 -46.96 16 22 Si 0.99 40.07 29.59 68.60 2.03 42.10 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 26 C -0.22 -10.99 9.74 22.48 0.22 -10.77 16 27 C -0.11 -4.69 9.90 22.13 0.22 -4.47 16 28 H 0.04 1.43 6.32 -2.39 -0.02 1.42 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.37 9.65 9.12 -74.06 -0.68 8.98 16 34 H 0.09 1.29 7.85 -2.38 -0.02 1.27 16 35 H 0.11 1.21 7.83 -2.39 -0.02 1.19 16 36 H 0.40 1.09 9.12 -74.06 -0.68 0.41 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.29 7.38 -2.39 -0.02 1.27 16 39 H 0.41 11.44 7.36 -92.71 -0.68 10.76 16 40 H 0.09 4.86 6.48 -2.91 -0.02 4.84 16 41 H 0.09 5.84 6.18 -2.91 -0.02 5.82 16 42 H 0.29 14.79 8.30 -92.70 -0.77 14.02 16 43 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 44 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -79.21 353.45 -0.72 -79.92 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -0.97 Total: 42.64 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.86 Total: -17.18 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -3.64 Total: -92.38 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -3.00 Total: -55.11 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -79.21 -0.72 -79.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929429634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.555 kcal (2) G-P(sol) polarization free energy of solvation -79.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds