Wall clock time and date at job start Tue Mar 31 2020 13:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47231 * 2 1 4 4 C 1.37657 * 119.96203 * 265.01728 * 3 2 1 5 5 C 1.39792 * 119.92110 * 179.97438 * 4 3 2 6 6 C 1.47449 * 120.07970 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99887 * 359.97438 * 6 5 4 8 8 O 1.34754 * 120.00225 * 180.02562 * 6 5 4 9 9 C 1.45199 * 117.00055 * 179.97438 * 8 6 5 10 10 C 1.39839 * 119.84681 * 359.97438 * 5 4 3 11 11 C 1.37618 * 119.91385 * 359.74626 * 10 5 4 12 12 C 1.39134 * 119.96370 * 84.99700 * 3 2 1 13 13 N 1.39406 * 119.91768 * 0.02562 * 12 3 2 14 14 C 1.34777 * 120.00076 * 155.38976 * 13 12 3 15 15 O 1.21577 * 119.99728 * 354.37720 * 14 13 12 16 16 N 1.34773 * 120.00092 * 174.37996 * 14 13 12 17 17 C 1.46504 * 119.99882 * 180.28003 * 16 14 13 18 18 H 1.08992 * 109.47298 * 34.71640 * 17 16 14 19 19 C 1.53010 * 109.46387 * 274.71777 * 17 16 14 20 20 C 1.50694 * 109.47113 * 154.72502 * 17 16 14 21 21 H 1.08004 * 120.00482 * 25.02457 * 20 17 16 22 22 C 1.37885 * 119.99848 * 205.03661 * 20 17 16 23 23 N 1.31509 * 120.00142 * 185.00449 * 22 20 17 24 24 Si 1.86803 * 119.99893 * 4.99803 * 22 20 17 25 25 H 1.48497 * 109.47110 * 94.97364 * 24 22 20 26 26 H 1.48500 * 109.46765 * 214.97580 * 24 22 20 27 27 H 1.48504 * 109.46858 * 334.97207 * 24 22 20 28 28 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47121 * 300.00463 * 1 2 3 30 30 H 1.09000 * 109.46605 * 60.00069 * 1 2 3 31 31 H 1.09000 * 109.47358 * 240.00009 * 2 1 3 32 32 H 1.09006 * 109.47015 * 120.00036 * 2 1 3 33 33 H 1.08002 * 120.03629 * 359.96244 * 4 3 2 34 34 H 1.09001 * 109.47316 * 300.00537 * 9 8 6 35 35 H 1.09008 * 109.46975 * 59.99476 * 9 8 6 36 36 H 1.08995 * 109.47506 * 179.97438 * 9 8 6 37 37 H 1.07995 * 120.04201 * 180.02562 * 10 5 4 38 38 H 1.07998 * 119.95675 * 180.27398 * 11 10 5 39 39 H 0.97000 * 120.00219 * 335.39304 * 13 12 3 40 40 H 0.97000 * 119.99914 * 359.97438 * 16 14 13 41 41 H 1.08998 * 109.46812 * 65.00343 * 19 17 16 42 42 H 1.09003 * 109.46331 * 185.00150 * 19 17 16 43 43 H 1.08992 * 109.47128 * 304.99793 * 19 17 16 44 44 H 0.96998 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3592 2.0344 -1.1881 5 6 2.8246 3.3526 -1.1871 6 6 3.1762 4.0131 -2.4577 7 8 3.0620 3.4114 -3.5071 8 8 3.6252 5.2836 -2.4549 9 6 3.9528 5.8698 -3.7423 10 6 2.9559 4.0434 0.0216 11 6 2.6218 3.4255 1.2050 12 6 2.1649 2.1110 1.2008 13 7 1.8331 1.4863 2.4021 14 6 2.3912 1.9041 3.5555 15 8 3.2590 2.7554 3.5375 16 7 1.9875 1.3781 4.7288 17 6 2.5899 1.8367 5.9831 18 1 2.8221 2.8989 5.9076 19 6 3.8758 1.0510 6.2482 20 6 1.6221 1.6132 7.1164 21 1 0.8652 0.8468 7.0371 22 6 1.7027 2.3873 8.2545 23 7 0.9240 2.1286 9.2822 24 14 2.9181 3.8035 8.3368 25 1 2.2348 5.0651 7.9542 26 1 3.4436 3.9249 9.7204 27 1 4.0422 3.5459 7.4011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2563 1.4980 -2.1198 34 1 4.7374 5.2829 -4.2197 35 1 3.0657 5.8739 -4.3759 36 1 4.3004 6.8927 -3.5979 37 1 3.3148 5.0620 0.0259 38 1 2.7188 3.9599 2.1385 39 1 1.2005 0.7510 2.4079 40 1 1.2949 0.6991 4.7432 41 1 4.6086 1.2819 5.4750 42 1 4.2766 1.3286 7.2232 43 1 3.6583 -0.0169 6.2354 44 1 0.9809 2.6730 10.0831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932819371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:39 Heat of formation + Delta-G solvation = -113.844453 kcal Electronic energy + Delta-G solvation = -26569.148087 eV Core-core repulsion = 22678.721217 eV Total energy + Delta-G solvation = -3890.426870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.06667 -41.37350 -39.84895 -37.53176 -36.96329 -36.06663 -34.84238 -34.41421 -32.09126 -30.78800 -30.40099 -28.40448 -27.27409 -25.30288 -24.88084 -23.29892 -22.71384 -21.61718 -21.38946 -20.06312 -18.97325 -18.61663 -18.28275 -17.98650 -17.37339 -17.02544 -16.61749 -16.17742 -15.84719 -15.51578 -15.12798 -14.86593 -14.78668 -14.62326 -14.51908 -14.43757 -14.29066 -14.05298 -13.65831 -13.40804 -13.07771 -13.06187 -12.88420 -12.80139 -12.70614 -12.36831 -12.10804 -11.86735 -11.81453 -11.80415 -11.72346 -11.54165 -11.22518 -11.06320 -10.81294 -9.95965 -9.87901 -9.10019 -8.36960 -6.42805 -0.39532 0.32821 1.30783 1.36875 1.38385 1.48994 1.60379 1.72096 2.09469 2.29829 2.76126 2.99053 3.28973 3.66701 3.73515 3.78479 4.13071 4.16677 4.30705 4.31929 4.34262 4.45259 4.48285 4.50148 4.69631 4.72943 4.75086 4.83635 4.89402 5.02789 5.08976 5.09917 5.13919 5.22486 5.26663 5.33184 5.35585 5.42158 5.45639 5.48843 5.67139 5.87401 5.91251 6.25588 6.61662 6.66240 7.05660 7.23121 7.50909 8.77864 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002945 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.378988 B = 9506.809734 C =10686.728033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.128 4.128 4 C -0.025 4.025 5 C -0.170 4.170 6 C 0.517 3.483 7 O -0.537 6.537 8 O -0.361 6.361 9 C 0.029 3.971 10 C -0.036 4.036 11 C -0.166 4.166 12 C 0.212 3.788 13 N -0.668 5.668 14 C 0.694 3.306 15 O -0.610 6.610 16 N -0.708 5.708 17 C 0.255 3.745 18 H 0.033 0.967 19 C -0.145 4.145 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.033 3.967 23 N -0.931 5.931 24 Si 0.922 3.078 25 H -0.276 1.276 26 H -0.278 1.278 27 H -0.247 1.247 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.149 0.851 38 H 0.135 0.865 39 H 0.423 0.577 40 H 0.406 0.594 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 0.034 -23.743 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.131 4.131 4 C -0.044 4.044 5 C -0.173 4.173 6 C 0.364 3.636 7 O -0.429 6.429 8 O -0.277 6.277 9 C -0.064 4.064 10 C -0.055 4.055 11 C -0.187 4.187 12 C 0.114 3.886 13 N -0.315 5.315 14 C 0.395 3.605 15 O -0.490 6.490 16 N -0.360 5.360 17 C 0.151 3.849 18 H 0.050 0.950 19 C -0.204 4.204 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.168 4.168 23 N -0.570 5.570 24 Si 0.747 3.253 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.170 1.170 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.262 0.738 40 H 0.241 0.759 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.646 0.669 -23.736 23.892 hybrid contribution -0.203 0.225 0.500 0.585 sum 2.443 0.895 -23.235 23.380 Atomic orbital electron populations 1.21811 0.93641 1.03072 1.02176 1.20563 0.96872 0.90072 1.04465 1.19660 1.05207 0.98039 0.90183 1.21006 0.93015 0.92086 0.98256 1.19066 1.11450 0.96244 0.90521 1.21197 0.73027 0.80184 0.89152 1.90798 1.52117 1.65712 1.34258 1.86562 1.75923 1.27754 1.37469 1.23585 1.01404 0.99754 0.81644 1.21356 0.93947 1.00219 0.90009 1.21427 1.03548 0.94049 0.99690 1.17866 0.94830 0.91151 0.84782 1.42570 1.47069 1.38027 1.03788 1.16200 0.81542 0.81745 0.81015 1.90838 1.35444 1.36415 1.86350 1.45445 1.42477 1.43868 1.04257 1.18791 0.91312 0.94553 0.80275 0.94952 1.22204 0.97397 1.00910 0.99852 1.21171 1.16365 1.19370 0.99638 0.92363 1.25543 0.96947 0.99192 0.95077 1.69976 1.40719 1.40874 1.05386 0.86121 0.80902 0.80181 0.78131 1.20178 1.20390 1.17025 0.90337 0.93135 0.92264 0.88748 0.90467 0.83123 0.91764 0.91650 0.85043 0.83374 0.84695 0.73799 0.75889 0.94540 0.93215 0.92220 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.80 71.98 0.71 -1.19 16 2 C -0.08 -1.20 5.43 29.85 0.16 -1.04 16 3 C -0.13 -2.67 5.14 -19.79 -0.10 -2.77 16 4 C -0.02 -0.54 9.21 22.51 0.21 -0.33 16 5 C -0.17 -4.11 5.88 -20.09 -0.12 -4.23 16 6 C 0.52 12.68 7.89 70.25 0.55 13.24 16 7 O -0.54 -14.95 16.13 19.81 0.32 -14.63 16 8 O -0.36 -7.61 9.81 -56.65 -0.56 -8.17 16 9 C 0.03 0.40 10.57 113.37 1.20 1.60 16 10 C -0.04 -0.91 9.60 22.51 0.22 -0.70 16 11 C -0.17 -4.86 8.68 22.35 0.19 -4.67 16 12 C 0.21 5.57 6.41 38.38 0.25 5.81 16 13 N -0.67 -17.43 4.98 -317.17 -1.58 -19.01 16 14 C 0.69 24.46 8.33 179.06 1.49 25.95 16 15 O -0.61 -25.86 13.14 -3.96 -0.05 -25.91 16 16 N -0.71 -25.78 5.07 -461.42 -2.34 -28.12 16 17 C 0.26 11.38 2.09 44.25 0.09 11.48 16 18 H 0.03 1.59 5.15 -2.39 -0.01 1.58 16 19 C -0.14 -5.94 9.05 71.99 0.65 -5.29 16 20 C -0.53 -27.23 9.06 25.60 0.23 -27.00 16 21 H 0.06 3.19 8.02 -2.91 -0.02 3.17 16 22 C 0.03 1.78 5.47 84.66 0.46 2.24 16 23 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16 24 Si 0.92 42.75 26.34 68.60 1.81 44.56 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.25 -11.04 5.96 99.48 0.59 -10.45 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.69 7.44 -2.39 -0.02 0.67 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 32 H 0.08 1.09 7.24 -2.38 -0.02 1.08 16 33 H 0.15 2.84 7.64 -2.91 -0.02 2.82 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.15 3.27 7.60 -2.91 -0.02 3.25 16 38 H 0.14 4.68 5.77 -2.91 -0.02 4.66 16 39 H 0.42 8.17 6.72 -92.71 -0.62 7.55 16 40 H 0.41 12.53 8.58 -92.71 -0.80 11.73 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 2.08 6.89 -2.39 -0.02 2.06 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -68.50 366.63 3.61 -64.89 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.49 Total: 27.13 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.19 Total: 13.09 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -3.62 Total: -100.97 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.29 Total: -48.70 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.81 Total: 44.56 kcal Total: -68.50 3.61 -64.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932819371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.954 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds