Wall clock time and date at job start Tue Mar 31 2020 13:42:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50700 * 119.99720 * 2 1
4 4 N 1.46499 * 109.47514 * 124.99617 * 3 2 1
5 5 C 1.46497 * 120.00430 * 270.00565 * 4 3 2
6 6 C 1.50703 * 109.46696 * 269.99561 * 5 4 3
7 7 H 1.08000 * 120.00194 * 359.97438 * 6 5 4
8 8 C 1.37872 * 120.00246 * 179.97438 * 6 5 4
9 9 N 1.31511 * 120.00527 * 179.97438 * 8 6 5
10 10 Si 1.86804 * 119.99748 * 359.97438 * 8 6 5
11 11 H 1.48507 * 109.46609 * 90.00326 * 10 8 6
12 12 H 1.48500 * 109.47406 * 210.00183 * 10 8 6
13 13 H 1.48496 * 109.47392 * 330.00644 * 10 8 6
14 14 C 1.34780 * 119.99440 * 89.99896 * 4 3 2
15 15 O 1.21587 * 119.99713 * 180.02562 * 14 4 3
16 16 N 1.34772 * 120.00499 * 359.97438 * 14 4 3
17 17 C 1.46500 * 120.00385 * 185.06315 * 16 14 4
18 18 C 1.53004 * 109.46791 * 56.71594 * 17 16 14
19 19 C 1.52992 * 109.47096 * 296.71616 * 17 16 14
20 20 C 1.53009 * 117.49861 * 174.99535 * 19 17 16
21 21 C 1.53001 * 117.49854 * 243.61598 * 19 17 16
22 22 C 1.53000 * 109.46911 * 176.71266 * 17 16 14
23 23 F 1.39903 * 109.46602 * 177.79978 * 22 17 16
24 24 F 1.39894 * 109.47333 * 297.79780 * 22 17 16
25 25 F 1.39899 * 109.47119 * 57.80613 * 22 17 16
26 26 H 1.07999 * 120.00207 * 0.02562 * 1 2 3
27 27 H 1.07999 * 119.99460 * 180.02562 * 1 2 3
28 28 H 1.07999 * 120.00207 * 179.97438 * 2 1 3
29 29 H 1.09008 * 109.47333 * 4.99760 * 3 2 1
30 30 H 1.09004 * 109.46986 * 245.00194 * 3 2 1
31 31 H 1.08999 * 109.47229 * 29.99153 * 5 4 3
32 32 H 1.08993 * 109.47354 * 149.99709 * 5 4 3
33 33 H 0.97003 * 120.00200 * 179.97438 * 9 8 6
34 34 H 0.97008 * 119.99610 * 5.07744 * 16 14 4
35 35 H 1.09000 * 109.46897 * 300.00099 * 18 17 16
36 36 H 1.08998 * 109.46949 * 59.99670 * 18 17 16
37 37 H 1.08993 * 109.47058 * 180.02562 * 18 17 16
38 38 H 1.09000 * 115.56670 * 29.31053 * 19 17 16
39 39 H 1.08999 * 117.49528 * 0.02562 * 20 19 17
40 40 H 1.08993 * 117.50011 * 214.98116 * 20 19 17
41 41 H 1.09001 * 117.49565 * 145.02495 * 21 19 17
42 42 H 1.08993 * 117.51908 * 359.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3321 1.1314
5 6 2.5588 1.8651 2.4249
6 6 2.8441 3.3438 2.4803
7 1 3.3038 3.8371 1.6367
8 6 2.5183 4.0670 3.6081
9 7 2.7677 5.3573 3.6567
10 14 1.7224 3.2139 5.0670
11 1 2.7778 2.7230 5.9893
12 1 0.8458 4.1742 5.7842
13 1 0.9113 2.0662 4.5873
14 6 4.2497 0.8664 0.9824
15 8 5.0216 0.8883 1.9215
16 7 4.6497 0.3755 -0.2073
17 6 5.9761 -0.2319 -0.3406
18 6 6.1170 -1.3752 0.6663
19 6 7.0499 0.8232 -0.0677
20 6 8.5073 0.3580 -0.0425
21 6 7.9897 1.1888 -1.2184
22 6 6.1467 -0.7780 -1.7596
23 9 7.4315 -1.3132 -1.9019
24 9 5.1966 -1.7783 -1.9916
25 9 5.9682 0.2580 -2.6826
26 1 -0.5400 0.9353 -0.0004
27 1 -0.5399 -0.9353 0.0004
28 1 1.8501 -0.9353 0.0004
29 1 1.3585 2.1317 0.0895
30 1 2.6212 1.4027 -0.9314
31 1 1.4887 1.6968 2.5459
32 1 3.0989 1.3605 3.2259
33 1 2.5381 5.8661 4.4500
34 1 4.0592 0.4245 -0.9755
35 1 5.9954 -0.9861 1.6772
36 1 5.3519 -2.1269 0.4719
37 1 7.1040 -1.8268 0.5675
38 1 6.7636 1.6187 0.6204
39 1 8.7010 -0.6997 -0.2207
40 1 9.1797 0.8472 0.6622
41 1 8.3216 2.2248 -1.2873
42 1 7.8436 0.6775 -2.1698
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000933574101.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:36
Heat of formation + Delta-G solvation = -109.070345 kcal
Electronic energy + Delta-G solvation = -29264.150414 eV
Core-core repulsion = 24832.073824 eV
Total energy + Delta-G solvation = -4432.076589 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-50.48638 -47.89859 -47.82130 -40.15428 -37.91615 -35.80168 -34.50766 -33.14166
-32.21485 -30.61490 -28.00127 -26.67787 -25.60022 -23.68227 -22.49827 -22.34525
-20.82187 -20.06915 -19.21734 -18.71541 -18.55851 -18.13557 -16.92731 -16.81230
-15.99990 -15.44232 -15.11389 -14.79007 -14.67632 -14.59366 -14.32055 -14.19826
-14.17262 -13.99391 -13.70854 -13.63798 -13.43878 -13.02792 -12.55491 -12.41060
-12.33347 -12.15993 -11.80387 -11.62428 -11.31877 -11.27383 -11.15710 -10.96324
-10.53765 -10.44100 -10.15743 -10.13382 -9.58785 -9.32658 -9.30192 -9.00242
-8.58998 -7.76243 -6.08858 -4.07480 2.26886 2.39839 2.90310 3.29261
3.35311 3.37211 3.45784 3.61871 3.81998 3.93344 4.01790 4.27112
4.39350 4.56289 4.79942 4.95729 5.09742 5.15737 5.24136 5.28761
5.32572 5.46087 5.54145 5.66123 5.71079 5.89572 5.90892 6.07144
6.09063 6.24299 6.27963 6.47689 6.57083 6.68888 6.81273 6.86581
7.22166 7.44276 7.61662 8.43880 8.47133 8.94412 9.13493 9.51653
11.04503
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.015488 B = 0.004616 C = 0.003966
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1807.404884 B = 6064.532145 C = 7057.994279
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.172 4.172
3 C 0.137 3.863
4 N -0.599 5.599
5 C 0.233 3.767
6 C -0.528 4.528
7 H 0.074 0.926
8 C 0.073 3.927
9 N -0.898 5.898
10 Si 0.875 3.125
11 H -0.274 1.274
12 H -0.285 1.285
13 H -0.266 1.266
14 C 0.714 3.286
15 O -0.572 6.572
16 N -0.746 5.746
17 C 0.196 3.804
18 C -0.168 4.168
19 C -0.157 4.157
20 C -0.169 4.169
21 C -0.196 4.196
22 C 0.450 3.550
23 F -0.171 7.171
24 F -0.178 7.178
25 F -0.173 7.173
26 H 0.100 0.900
27 H 0.095 0.905
28 H 0.105 0.895
29 H 0.093 0.907
30 H 0.069 0.931
31 H 0.031 0.969
32 H 0.038 0.962
33 H 0.264 0.736
34 H 0.396 0.604
35 H 0.109 0.891
36 H 0.065 0.935
37 H 0.073 0.927
38 H 0.140 0.860
39 H 0.100 0.900
40 H 0.100 0.900
41 H 0.099 0.901
42 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.384 -14.231 -12.243 19.278
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.191 4.191
3 C 0.013 3.987
4 N -0.333 5.333
5 C 0.113 3.887
6 C -0.567 4.567
7 H 0.093 0.907
8 C -0.129 4.129
9 N -0.536 5.536
10 Si 0.701 3.299
11 H -0.199 1.199
12 H -0.211 1.211
13 H -0.190 1.190
14 C 0.416 3.584
15 O -0.448 6.448
16 N -0.406 5.406
17 C 0.107 3.893
18 C -0.226 4.226
19 C -0.176 4.176
20 C -0.206 4.206
21 C -0.232 4.232
22 C 0.395 3.605
23 F -0.152 7.152
24 F -0.159 7.159
25 F -0.155 7.155
26 H 0.118 0.882
27 H 0.113 0.887
28 H 0.123 0.877
29 H 0.111 0.889
30 H 0.087 0.913
31 H 0.049 0.951
32 H 0.056 0.944
33 H 0.074 0.926
34 H 0.233 0.767
35 H 0.127 0.873
36 H 0.084 0.916
37 H 0.091 0.909
38 H 0.158 0.842
39 H 0.118 0.882
40 H 0.118 0.882
41 H 0.118 0.882
42 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 4.901 -14.042 -11.409 18.745
hybrid contribution -0.731 -0.284 0.051 0.785
sum 4.170 -14.326 -11.358 18.752
Atomic orbital electron populations
1.23843 0.95808 1.01865 1.00271 1.23465 0.96492 0.99016 1.00139
1.20541 0.93208 0.95659 0.89266 1.47174 1.09038 1.63579 1.13466
1.19584 0.94719 0.94926 0.79518 1.21353 1.41052 0.91225 1.03066
0.90749 1.24832 0.95306 0.94699 0.98087 1.69895 1.47822 1.06617
1.29273 0.86879 0.79881 0.79671 0.83420 1.19915 1.21131 1.19029
1.15627 0.82764 0.78052 0.81987 1.90868 1.52585 1.61934 1.39446
1.45099 1.15975 1.66918 1.12642 1.20520 0.85458 0.94620 0.88740
1.22334 1.02538 0.95711 1.02025 1.22677 0.89766 1.01521 1.03626
1.23097 0.95657 1.00700 1.01162 1.23509 1.03983 1.01903 0.93850
1.20678 0.74045 0.76058 0.89679 1.93148 1.38960 1.86759 1.96348
1.93190 1.64686 1.62482 1.95563 1.93179 1.94749 1.58179 1.69345
0.88168 0.88704 0.87674 0.88860 0.91278 0.95111 0.94402 0.92591
0.76730 0.87275 0.91551 0.90858 0.84186 0.88206 0.88185 0.88208
0.88198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.14 14.32 29.01 0.42 -1.73 16
2 C -0.17 -2.27 9.85 -36.03 -0.35 -2.62 16
3 C 0.14 2.12 5.65 -5.19 -0.03 2.09 16
4 N -0.60 -11.86 2.44 -182.18 -0.44 -12.30 16
5 C 0.23 5.54 4.23 -5.19 -0.02 5.52 16
6 C -0.53 -14.82 9.94 -34.44 -0.34 -15.16 16
7 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16
8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16
9 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16
10 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16
11 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16
12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
13 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16
14 C 0.71 13.87 7.56 -86.92 -0.66 13.22 16
15 O -0.57 -12.99 12.48 5.29 0.07 -12.92 16
16 N -0.75 -11.27 4.85 -52.42 -0.25 -11.53 16
17 C 0.20 2.67 0.46 -131.82 -0.06 2.61 16
18 C -0.17 -2.19 7.89 37.16 0.29 -1.90 16
19 C -0.16 -2.25 4.88 -90.62 -0.44 -2.69 16
20 C -0.17 -1.99 9.17 -26.73 -0.25 -2.23 16
21 C -0.20 -2.39 8.95 -26.73 -0.24 -2.63 16
22 C 0.45 5.42 1.85 37.16 0.07 5.49 16
23 F -0.17 -1.93 12.97 2.25 0.03 -1.90 16
24 F -0.18 -2.10 16.66 2.25 0.04 -2.06 16
25 F -0.17 -2.13 14.74 2.25 0.03 -2.10 16
26 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16
27 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16
28 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16
29 H 0.09 1.50 7.72 -51.92 -0.40 1.10 16
30 H 0.07 0.91 6.29 -51.93 -0.33 0.59 16
31 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16
32 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16
33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
34 H 0.40 5.25 6.02 -40.82 -0.25 5.00 16
35 H 0.11 1.72 6.10 -51.93 -0.32 1.41 16
36 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16
37 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16
38 H 0.14 2.52 6.70 -51.93 -0.35 2.17 16
39 H 0.10 1.06 5.94 -51.93 -0.31 0.75 16
40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16
41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16
42 H 0.10 1.17 4.52 -51.93 -0.23 0.94 16
LS Contribution 344.87 15.07 5.20 5.20
Total: -1.00 -31.30 344.87 -6.30 -37.60
By element:
Atomic # 1 Polarization: 13.37 SS G_CDS: -5.35 Total: 8.02 kcal
Atomic # 6 Polarization: 3.68 SS G_CDS: -1.71 Total: 1.97 kcal
Atomic # 7 Polarization: -50.49 SS G_CDS: 0.07 Total: -50.42 kcal
Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.92 kcal
Atomic # 9 Polarization: -6.16 SS G_CDS: 0.10 Total: -6.06 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -31.30 -6.30 -37.60 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000933574101.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.471 kcal
(2) G-P(sol) polarization free energy of solvation -31.304 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds