Wall clock time and date at job start Tue Mar 31 2020 13:42:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50700 * 119.99720 * 2 1
4 4 N 1.46499 * 109.47514 * 124.99617 * 3 2 1
5 5 C 1.46497 * 120.00430 * 270.00565 * 4 3 2
6 6 C 1.50703 * 109.46696 * 269.99561 * 5 4 3
7 7 H 1.08000 * 120.00194 * 359.97438 * 6 5 4
8 8 C 1.37872 * 120.00246 * 179.97438 * 6 5 4
9 9 N 1.31511 * 120.00527 * 179.97438 * 8 6 5
10 10 Si 1.86804 * 119.99748 * 359.97438 * 8 6 5
11 11 H 1.48507 * 109.46609 * 90.00326 * 10 8 6
12 12 H 1.48500 * 109.47406 * 210.00183 * 10 8 6
13 13 H 1.48496 * 109.47392 * 330.00644 * 10 8 6
14 14 C 1.34780 * 119.99440 * 89.99896 * 4 3 2
15 15 O 1.21587 * 119.99713 * 180.02562 * 14 4 3
16 16 N 1.34772 * 120.00499 * 359.97438 * 14 4 3
17 17 C 1.46500 * 120.00385 * 185.06315 * 16 14 4
18 18 C 1.53004 * 109.46791 * 56.71594 * 17 16 14
19 19 C 1.52992 * 109.47096 * 296.71616 * 17 16 14
20 20 C 1.53009 * 117.49861 * 174.99535 * 19 17 16
21 21 C 1.53001 * 117.49854 * 243.61598 * 19 17 16
22 22 C 1.53000 * 109.46911 * 176.71266 * 17 16 14
23 23 F 1.39903 * 109.46602 * 177.79978 * 22 17 16
24 24 F 1.39894 * 109.47333 * 297.79780 * 22 17 16
25 25 F 1.39899 * 109.47119 * 57.80613 * 22 17 16
26 26 H 1.07999 * 120.00207 * 0.02562 * 1 2 3
27 27 H 1.07999 * 119.99460 * 180.02562 * 1 2 3
28 28 H 1.07999 * 120.00207 * 179.97438 * 2 1 3
29 29 H 1.09008 * 109.47333 * 4.99760 * 3 2 1
30 30 H 1.09004 * 109.46986 * 245.00194 * 3 2 1
31 31 H 1.08999 * 109.47229 * 29.99153 * 5 4 3
32 32 H 1.08993 * 109.47354 * 149.99709 * 5 4 3
33 33 H 0.97003 * 120.00200 * 179.97438 * 9 8 6
34 34 H 0.97008 * 119.99610 * 5.07744 * 16 14 4
35 35 H 1.09000 * 109.46897 * 300.00099 * 18 17 16
36 36 H 1.08998 * 109.46949 * 59.99670 * 18 17 16
37 37 H 1.08993 * 109.47058 * 180.02562 * 18 17 16
38 38 H 1.09000 * 115.56670 * 29.31053 * 19 17 16
39 39 H 1.08999 * 117.49528 * 0.02562 * 20 19 17
40 40 H 1.08993 * 117.50011 * 214.98116 * 20 19 17
41 41 H 1.09001 * 117.49565 * 145.02495 * 21 19 17
42 42 H 1.08993 * 117.51908 * 359.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3321 1.1314
5 6 2.5588 1.8651 2.4249
6 6 2.8441 3.3438 2.4803
7 1 3.3038 3.8371 1.6367
8 6 2.5183 4.0670 3.6081
9 7 2.7677 5.3573 3.6567
10 14 1.7224 3.2139 5.0670
11 1 2.7778 2.7230 5.9893
12 1 0.8458 4.1742 5.7842
13 1 0.9113 2.0662 4.5873
14 6 4.2497 0.8664 0.9824
15 8 5.0216 0.8883 1.9215
16 7 4.6497 0.3755 -0.2073
17 6 5.9761 -0.2319 -0.3406
18 6 6.1170 -1.3752 0.6663
19 6 7.0499 0.8232 -0.0677
20 6 8.5073 0.3580 -0.0425
21 6 7.9897 1.1888 -1.2184
22 6 6.1467 -0.7780 -1.7596
23 9 7.4315 -1.3132 -1.9019
24 9 5.1966 -1.7783 -1.9916
25 9 5.9682 0.2580 -2.6826
26 1 -0.5400 0.9353 -0.0004
27 1 -0.5399 -0.9353 0.0004
28 1 1.8501 -0.9353 0.0004
29 1 1.3585 2.1317 0.0895
30 1 2.6212 1.4027 -0.9314
31 1 1.4887 1.6968 2.5459
32 1 3.0989 1.3605 3.2259
33 1 2.5381 5.8661 4.4500
34 1 4.0592 0.4245 -0.9755
35 1 5.9954 -0.9861 1.6772
36 1 5.3519 -2.1269 0.4719
37 1 7.1040 -1.8268 0.5675
38 1 6.7636 1.6187 0.6204
39 1 8.7010 -0.6997 -0.2207
40 1 9.1797 0.8472 0.6622
41 1 8.3216 2.2248 -1.2873
42 1 7.8436 0.6775 -2.1698
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000933574101.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:35
Heat of formation + Delta-G solvation = -128.058814 kcal
Electronic energy + Delta-G solvation = -29264.973816 eV
Core-core repulsion = 24832.073824 eV
Total energy + Delta-G solvation = -4432.899991 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-51.45777 -48.84785 -48.79646 -41.55726 -39.12888 -37.20617 -35.82597 -34.91754
-33.79078 -31.97103 -29.76494 -27.72261 -26.95098 -24.98785 -24.14975 -23.32968
-22.11781 -21.17446 -20.41634 -19.79116 -19.64086 -19.39503 -19.03652 -18.12189
-17.16833 -16.80396 -16.54988 -16.00426 -15.84148 -15.73209 -15.61201 -15.31018
-15.21541 -15.05166 -15.02881 -14.90295 -14.65926 -14.48817 -14.18597 -13.66708
-13.51021 -13.45796 -13.25935 -13.03842 -12.89776 -12.49912 -12.30323 -12.27000
-12.24596 -11.94070 -11.71597 -11.51199 -11.18213 -10.91037 -10.80005 -10.35549
-10.34592 -9.37915 -8.31069 -6.35569 1.14138 1.35422 1.37730 1.38904
1.47176 1.71425 2.18371 2.33160 2.43588 2.72550 2.85141 2.89694
3.03767 3.08854 3.49515 3.75199 3.89606 4.01039 4.11195 4.18315
4.27584 4.34872 4.51877 4.65864 4.68254 4.73430 4.83227 4.90025
4.93253 5.04731 5.06397 5.14352 5.18831 5.32591 5.47684 5.51115
5.70689 5.86007 5.91836 6.29545 6.65844 6.98905 7.25994 7.62694
8.85926
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.015488 B = 0.004616 C = 0.003966
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1807.404884 B = 6064.532145 C = 7057.994279
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.185 4.185
3 C 0.134 3.866
4 N -0.608 5.608
5 C 0.246 3.754
6 C -0.532 4.532
7 H 0.027 0.973
8 C 0.013 3.987
9 N -0.946 5.946
10 Si 0.945 3.055
11 H -0.276 1.276
12 H -0.277 1.277
13 H -0.237 1.237
14 C 0.712 3.288
15 O -0.610 6.610
16 N -0.731 5.731
17 C 0.191 3.809
18 C -0.164 4.164
19 C -0.181 4.181
20 C -0.152 4.152
21 C -0.187 4.187
22 C 0.462 3.538
23 F -0.162 7.162
24 F -0.172 7.172
25 F -0.173 7.173
26 H 0.101 0.899
27 H 0.118 0.882
28 H 0.113 0.887
29 H 0.082 0.918
30 H 0.087 0.913
31 H 0.048 0.952
32 H 0.023 0.977
33 H 0.267 0.733
34 H 0.406 0.594
35 H 0.078 0.922
36 H 0.076 0.924
37 H 0.096 0.904
38 H 0.096 0.904
39 H 0.118 0.882
40 H 0.104 0.896
41 H 0.100 0.900
42 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.660 -16.889 -13.098 21.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.204 4.204
3 C 0.011 3.989
4 N -0.342 5.342
5 C 0.124 3.876
6 C -0.571 4.571
7 H 0.046 0.954
8 C -0.185 4.185
9 N -0.587 5.587
10 Si 0.768 3.232
11 H -0.201 1.201
12 H -0.203 1.203
13 H -0.161 1.161
14 C 0.413 3.587
15 O -0.490 6.490
16 N -0.391 5.391
17 C 0.102 3.898
18 C -0.221 4.221
19 C -0.200 4.200
20 C -0.190 4.190
21 C -0.223 4.223
22 C 0.407 3.593
23 F -0.143 7.143
24 F -0.153 7.153
25 F -0.155 7.155
26 H 0.119 0.881
27 H 0.136 0.864
28 H 0.131 0.869
29 H 0.101 0.899
30 H 0.105 0.895
31 H 0.066 0.934
32 H 0.041 0.959
33 H 0.076 0.924
34 H 0.245 0.755
35 H 0.097 0.903
36 H 0.095 0.905
37 H 0.114 0.886
38 H 0.115 0.885
39 H 0.136 0.864
40 H 0.122 0.878
41 H 0.119 0.881
42 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 4.164 -16.730 -12.341 21.203
hybrid contribution -0.456 0.613 0.223 0.796
sum 3.709 -16.117 -12.119 20.503
Atomic orbital electron populations
1.24077 0.95343 1.03066 0.97591 1.23272 0.96851 0.97819 1.02493
1.20733 0.92758 0.96948 0.88415 1.47121 1.10100 1.63492 1.13443
1.19191 0.95269 0.91803 0.81368 1.21574 1.40255 0.93584 1.01682
0.95415 1.25799 0.95996 0.95299 1.01440 1.70052 1.49578 1.08545
1.30492 0.85754 0.79076 0.79369 0.78983 1.20148 1.20253 1.16054
1.15745 0.82310 0.77956 0.82664 1.90841 1.53617 1.63397 1.41129
1.44866 1.16807 1.65960 1.11453 1.20645 0.84173 0.94642 0.90318
1.22277 1.04308 0.95512 1.00027 1.22448 0.91514 1.01480 1.04584
1.23207 0.93467 1.01712 1.00579 1.23562 1.02551 1.02346 0.93871
1.20244 0.74491 0.76066 0.88473 1.93167 1.38343 1.86568 1.96213
1.93208 1.64534 1.62142 1.95432 1.93185 1.94785 1.58335 1.69174
0.88085 0.86350 0.86863 0.89940 0.89455 0.93386 0.95902 0.92376
0.75549 0.90265 0.90462 0.88565 0.88532 0.86360 0.87780 0.88111
0.87188
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.40 14.32 67.78 0.97 -2.43 16
2 C -0.19 -4.49 9.85 25.64 0.25 -4.24 16
3 C 0.13 4.05 5.65 85.63 0.48 4.53 16
4 N -0.61 -24.34 2.44 -848.57 -2.07 -26.41 16
5 C 0.25 11.79 4.23 85.63 0.36 12.15 16
6 C -0.53 -30.96 9.94 25.60 0.25 -30.70 16
7 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16
8 C 0.01 0.73 5.47 84.65 0.46 1.20 16
9 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16
10 Si 0.95 44.05 27.47 68.60 1.88 45.94 16
11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16
12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
13 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16
14 C 0.71 28.26 7.56 179.05 1.35 29.61 16
15 O -0.61 -28.91 12.48 -3.99 -0.05 -28.96 16
16 N -0.73 -21.91 4.85 -438.02 -2.13 -24.03 16
17 C 0.19 5.05 0.46 3.60 0.00 5.05 16
18 C -0.16 -4.07 7.89 71.98 0.57 -3.50 16
19 C -0.18 -5.21 4.88 -10.79 -0.05 -5.26 16
20 C -0.15 -3.39 9.17 30.60 0.28 -3.11 16
21 C -0.19 -4.36 8.95 30.60 0.27 -4.09 16
22 C 0.46 10.10 1.85 71.98 0.13 10.24 16
23 F -0.16 -3.17 12.97 44.97 0.58 -2.59 16
24 F -0.17 -3.57 16.66 44.97 0.75 -2.82 16
25 F -0.17 -3.92 14.74 44.97 0.66 -3.25 16
26 H 0.10 2.10 7.84 -2.91 -0.02 2.08 16
27 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16
28 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16
29 H 0.08 2.65 7.72 -2.38 -0.02 2.63 16
30 H 0.09 2.24 6.29 -2.38 -0.02 2.23 16
31 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16
32 H 0.02 1.17 6.85 -2.39 -0.02 1.15 16
33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16
34 H 0.41 10.35 6.02 -92.70 -0.56 9.80 16
35 H 0.08 2.53 6.10 -2.39 -0.01 2.51 16
36 H 0.08 1.72 7.75 -2.39 -0.02 1.71 16
37 H 0.10 1.90 6.71 -2.39 -0.02 1.88 16
38 H 0.10 3.70 6.70 -2.39 -0.02 3.69 16
39 H 0.12 2.19 5.94 -2.39 -0.01 2.17 16
40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16
41 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16
42 H 0.11 2.35 4.52 -2.39 -0.01 2.34 16
Total: -1.00 -70.97 344.87 5.73 -65.24
By element:
Atomic # 1 Polarization: 26.35 SS G_CDS: 0.45 Total: 26.80 kcal
Atomic # 6 Polarization: 4.09 SS G_CDS: 5.34 Total: 9.44 kcal
Atomic # 7 Polarization: -105.90 SS G_CDS: -3.90 Total: -109.79 kcal
Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal
Atomic # 9 Polarization: -10.66 SS G_CDS: 2.00 Total: -8.67 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal
Total: -70.97 5.73 -65.24 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000933574101.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.816 kcal
(2) G-P(sol) polarization free energy of solvation -70.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.784 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds